I am trying to import the Hetionet into the Neo4j and I follow the guidiance below:
https://github.com/hetio/hetionet/tree/master/hetnet/neo4j
While using the command
curl --insecure --location https://github.com/hetio/hetionet/raw/master/hetnet/neo4j/hetionet-v1.0.db.tar.bz2 | tar --extract --bzip2
The error “curl: (23) Failure writing output to destination” has been thrown.
Therefore I just downloaded the file directly and moved to the directory ".Neo4jDesktop\relate-data\dbmss\dbms-0d0d3324-d1a6-4d3e-b82c-0c4451a8c880\data\databases"
After I started the database, It showed that this database is currently offline. When I trying to do some operations to it, the error "Neo.TransientError.Database.DatabaseUnavailable" has been shown.
Some valuable informations in the log file debug.log are as below:
2022-07-19 23:11:53.896+0000 ERROR [c.n.d.DbmsReconciler] Encountered error when attempting to reconcile database graph.db (request by SystemGraph:1) to state 'online', database remains in state 'offline'
org.neo4j.dbms.api.DatabaseManagementException: Unable to start database DatabaseId{7a8c6b65[graph.db]}
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.database.Database#3da82075' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.7'".
The version of the dump you are trying to import is pretty old. From the readme
The database has been migrated to the Neo4j 3.0.1 Community Edition.
If you use a current 4.4 version of the database, the only thing you can do is to cascade through multiple versions and upgrade the store.
I am not yet sure if you really need each minor version to work properly.
Maybe it's already enough to go from 3.0 to 3.5 and follow this guide https://neo4j.com/docs/upgrade-migration-guide/current/migration/migrate-to-4.0/migrate-single-instance/
Otherwise starting 3.1-3.5 with allow_upgrade=true on the stores is the only option I see. There are Docker images available at
https://hub.docker.com/_/neo4j/ also for those older, unsupported versions.
Edit: You should be able to start/upgrade it with 3.3 and then again with 3.5 and then run a 4.4 neo4j-admin copy
Related
I'm trying to remotely back up my Neo4J database for already 2 days and nothing works.
I run
sudo neo4j-admin backup --backup-dir=backup --name=graph.db-backup --from=1.1.1.1:1111 --timeout=50m
The files start to get saved and then simply erased after a while and there's no backup.
I tried setting up --pagecache=16M and HEAP_SIZE but it has no effect. Sometime it just stalls sometimes I get an error like this:
unexpected error: java.io.IOException: org.neo4j.com.ComException: Channel has been closed
The DB I'm backing up is Enterprise 3.3.3 and the one I'm backing up with is 3.5.14
Thank you for any help.
Is this the normal Neo4J behavior?
I try to install InfluxDB Enterprise Edition using this documentation: https://docs.influxdata.com/enterprise/v1.2/production_installation/. The Requirements suggest to either use a license-key or license-path, where I do it with the License Key.
In Step 2, after installing, configuring and starting the Data Nodes I try to join the data nodes to the cluster. But executing influxd-ctl add-data enterprise-data-01:8088 gives me the error:
add-data: operation exited with error: open /tmp/influx-enterprise.key.json: no such file or directory
although I configured not to use the license-key json but rather the license-key.
I also have the json file, so I tried it with the license-path but still getting the same error. Has somebody else encountered the same issues?
EDIT
Issue has been resolved, I had to restart the Data nodes after I changed the configuration to use the license-path facepalm. I went into this problem as I previously entered an old license key.
I'm trying to create an unmanaged extension using this. I'm currently using a Windows environment
Now, I followed everything and here is what my pom file looks now:
POM
and here is my java class containing the unmanaged extension
HelloWorldResource
Now, I tried to run "**mvn clean package**", and it produced a jar file around 10MB which I then put into the plugins folder of my database.
When I start the server, the following error always appears:
Starting Neo4j failed:
org.neo4j.server.web.NeoServletContainer-49fd135#9bfd861c==org.neo4j.server.web.NeoServletContainer,-1,false
The log file is not useful as it doesn't show any exception that cause the it. Other people also reported the issue in stack overflow and appears to be a jar issue. What else could I have missed?
Neo4j fails to start
Neo4j fails in startup
PS: I'm using 3.0.3 Neo4j Community Edition.
I have created nodes and relationships in java using Neo4j jars,I am trying to display the same from Neoclipse,
I am getting Exception when trying to create connection from Neoclipse to the folder created by java program (I am using windows 7) .
Exception:
java.lang.IllegalStateException:Mismatching store version found(v0.A.1 while expecting v0.A.0)
and the store is not cleanly shutdown.
Recover the database with previous database version and then attempt to upgrade .
after this i added graphDb.shutdown(); code then i got different exception:
org.neo4j.kernel.impl.storemigration.StoreUpgrader$UnableToUpgradeException:
Not all store Files match the version required for successful upgrade.
List of jar Files:
geronimo-jta_1.1_spec-1.1.1.jar
lucene-core-3.6.2.jar
neo4j-2.0.1.jar
neo4j-cypher-2.0.1.jar
neo4j-graph-algo-2.0.1.jar
neo4j-graph-matching-2.0.1.jar
neo4j-jmx-2.0.1.jar
neo4j-kernel-2.0.1.jar
neo4j-lucene-index-2.0.1.jar
neo4j-udc-2.0.1.jar
Please guide me.
It looks like you've created your datastore with Neo4j 2.0.1. Neoclipse seems to use an earlier version. Datastore downgrades are not supported.
However you could drop your database into a Neo4j 2.0.1 server and connect to it remotely using Neoclipse.
I am receiving a "not cleanly shutdown" log message when attempting to open a 2 year old Neo4j database posted on github at https://github.com/IGS/disease-ontology/tree/master/database/neo4j. How do I open/update this database?
Here's how I got it initialized: Downloaded the graph_db.tgz to my local win7-64 machine (neo4j-community-1.9.RC2), extracted the graph.db file to the data subfolder, renamed it graph_ontology.db, and edited the server config file to point to it as follows:
org.neo4j.server.database.location=data/graph_ontology.db
When starting Neo4j, the last entry in the log file is:
2013-05-21 17:23:33.418+0000 INFO [o.n.k.EmbeddedGraphDatabase]: Startup failed: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#1f91d41b' was successfully initialized, but failed to start. Please see attached cause exception.: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#b86527e' was successfully initialized, but failed to start. Please see attached cause exception.: Mismatching store version found (Uknown while expecting v0.A.0) and the store is not cleanly shutdown. Recover the database with the previous database version and then attempt to upgrade
Thanks,
Jeff
Look at the messages.log of the database to determine which neo4j version it was started with last.
In this case it is 1.4
You can get it from here: http://dist.neo4j.org/neo4j-community-1.4.2-windows.zip
You can easily just point the neo4j-shell to it:
create an upgrade.properties that contains: allow_store_upgrade=true
and then use: bin/neo4j-shell -path graph_ontology.db -config upgrade.properties
Here is the converted db for 1.9.GA: https://dl.dropboxusercontent.com/u/14493611/disease_ontology_graphdb-1.9.tgz