Has anyone worked with the ADE20k dataset? I'm looking to do statistical analysis of the raw data like finding the most number of reoccurring classes by creating a multi-histogram plot.
I want to find which classes occur most frequently together and have around the same ranged number of occurrences
I have used the pickle file provided in the started code but haven't been able to find a way to find the classes occuring together for the 150 classed subset used in the CSAIL segmentation benchmark.
Related
We are currently working on integrating ICD10-CM for our medical company, to be used for patient diagnosis. ICD10-CM is a coding system for diagnoses.
I tried to import ICD10-CM data in description-code pairs but obviously, it didn't work since AutoML needed more text for that code(label). I found a dataset on Kaggle but it only contained hrefs to an ICD10 website. I did find out that the website contains multiple texts and descriptions associated with codes that can be used to train our desired model.
Kaggle Dataset:
https://www.kaggle.com/shamssam/icd10datacom
Sample of a page from ICD10data.com:
https://www.icd10data.com/ICD10CM/Codes/A00-B99/A15-A19/A17-/A17.0
Most notable fields are:
- Approximate Synonyms
- Clinical Information
- Diagnosis Index
If I made a dataset from the sentences found in these pages and assigned them to their code(labels), will it be enough for AutoML dataset training? since each label will have 2 or more texts finally instead of just one, but definitely still a lot less than a 100 for each code unlike those in demos/tutorials.
From what I can see here, the disease code has a tree-like structure where, for instance, all L00-L99 codes refer to "Diseases of the skin and subcutaneous tissue". At the same time L00-L08 codes refer to "Infections of the skin and subcutaneous tissue", and so on.
What I mean is that the problem is not 90000 examples for 90000 different independent labels, but a decision tree (you take several decisions in function of the previous decision: the first step would be choosing which of the about 15 most general categories fits best, then choosing which of the subcategories etc.)
In this sense, probably autoML is not the best product, given that you cannot implement a specially designed decision tree model that takes into account all of this.
Another way of using autoML would be training separately for each of the decisions and then combine the different models. This would easily work for the first layer of decision but would be exponentially time consuming (the number of models to train in order to be able to predict more accurately grows exponentially with the level of accuracy, by accurate I mean afirminng it is L00-L08 instad of L00-L99).
I hope this helps you understand better the problem and the different approaches you can give to it!
I have 27000 free text elements, each of around 2-3 sentences. I need to cluster these by similarity. So far, I have pretty limited success. I have tried the following:
I used Python Natural Language Toolkit to remove stop words, lemmatize and tokenize, then generated semantically similar words for each word in the sentence before inserting them into a Neo4j graph database. I then tried querying that using the TF counts for each word and related word. That didn't work very well and only resulted in being able to easily calculate the similarity between two text items.
I then looked at Graphawares NLP library to annotate, enrich and calculate the cosine similarity between each text item. After 4 days of processing similarity I checked the log to find that it would take 1.5 years to process. Apparently the community version of the plugin isn't optimised, so I guess it's not appropriate for this kind of volume of data.
I then wrote a custom implementation that took the same approach as the Graphaware plugin, but in much simpler form. I used scikitlearn's TfidfVectorizer to calculate the cosine similarity between each text item and every other text item and saved those as relationships between the Neo4j nodes. However, with 27000 text items that creates 27000 * 27000 = 729000000 relationships! The intention was to take the graph into Grephi selecting relationships of over X threshold of similarity and use modularity clustering to extract clusters. Processing for this is around 4 days which is much better. Processing is incomplete and is currently running. However, I believe that Grephi has a max edge count of 1M, so I expect this to restrict what I can do.
So I turned to more conventional ML techniques using scikitlearn's KMeans, DBSCAN, and MeanShift algorithms. I am getting clustering, but when it's plotted on a scatter chart there is no separation (I can show code if that would help). Here is what I get with DBSCAN:
I get similar results with KMeans. These algorithms run within a few seconds, which obviously makes life easier, but the results seem poor.
So my questions are:
Is there a better approach to this?
Can I expect to find distinct clusters at all in free text?
What should my next move be?
Thank you very much.
I think your question is too general to be a good fit for Stack Overflow, but to give you some pointers...
What is your data? You discuss your methods in detail but not your data. What sort of clusters are you expecting?
Example useful description:
I have a bunch of short product reviews. I expect to be able to separate reviews of shoes, hats, and refrigerators.
Have you tried topic modelling? It's not fancy but it's a traditional method of sorting textual documents into clusters. Start with LDA if you're not familiar with anything.
Are you looking for duplicates? If you're looking for plagiarism or bot-generated spam, look into MinHash, SimHash, and the FuzzyWuzzy library for Python.
I have a data that represents comments from the operator on various activities performed on a industrial device. The comments, could reflect either a routine maintainence/replacement activity or could represent that some damage occured and it had to be repaired to rectify the damage.
I have a set of 200,000 sentences that needs to be classified into two buckets - Repair/Scheduled Maintainence(or undetermined). These have no labels, hence looking for an unsupervised learning based solution.
Some sample data is as shown below:
"Motor coil damaged .Replaced motor"
"Belt cracks seen. Installed new belt"
"Occasional start up issues. Replaced switches"
"Replaced belts"
"Oiling and cleaning done".
"Did a preventive maintainence schedule"
The first three sentences have to be labeled as Repair while the second three as Scheduled maintainence.
What would be a good approach to this problem. though I have some exposure to Machine learning I am new to NLP based machine learning.
I see many papers related to this https://pdfs.semanticscholar.org/a408/d3b5b37caefb93629273fa3d0c192668d63c.pdf
https://arxiv.org/abs/1611.07897
but wanted to understand if there is any standard approach to such problems
Seems like you could use some reliable keywords (verbs it seems in this case) to create training samples for an NLP Classifier. Or you could use KMeans or KMedioids clustering and use 2 as K, which would do a pretty good job of separating the set. If you want to get really involved, you could use something like Latent Derichlet Allocation, which is a form of unsupervised topic modeling. However, for a problem like this, on the small amount of data you have, the fancier you get the more frustrated with the results you will become IMO.
Both OpenNLP and StanfordNLP have text classifiers for this, so I recommend the following if you want to go the classification route:
- Use key word searches to produce a few thousand examples of your two categories
- Put those sentences in a file with a label based on the OpenNLP format (label |space| sentence | newline )
- Train a classifier with the OpenNLP DocumentClassifier, and I recommend stemming for one of your feature generators
- after you have the model, use it in Java and classify each sentence.
- Keep track of the scores, and quarantine low scores (you will have ambiguous classes I'm sure)
If you don't want to go that route, I recommend using a text indexing technology de-jeur like SOLR or ElasticSearch or your favorite RDBMS's text indexing to perform a "More like this" type function so you don't have to play the Machine learning continuous model updating game.
In tensorflow, I plan to build some model and compare it to other baseline models with respect to different subsets of the training data. I.e. I would like to train my model and the baseline models with the same subsets of training data.
In the naive way queue-runner and TFreaders are implemented (e.g. im2txt), this requires duplicating the data per each selection of subsets, which is my case, will require to use very large amounts of disk space.
It will be best, if there would be a way to tell the queue to fetch only samples from a specified subset of ids, or to ignore samples if they are not part of a given subset of ids.
If I understand correctly ignoring samples is not trivial, because it will require to stitch samples from different reads to a single batch.
Does anybody knows a way to do that? Or can suggest an alternative approach which does not requires pre-loading all the training data into the RAM?
Thanks!
You could encode your condition as part of keep_input parameter of tf.train.maybe_batch
I am interested in parsing semi-structured text. Assuming I have a text with labels of the kind: year_field, year_value, identity_field, identity_value, ..., address_field, address_value and so on.
These fields and their associated values can be everywhere in the text, but usually they are near to each other, and more generally the text in organized in a (very) rough matrix, but rather often the value is just after the associated field with eventually some non-interesting information in between.
The number of different format can be up to several dozens, and is not that rigid (do not count on spacing, moreover some information can be added and removed).
I am looking toward machine learning techniques to extract all those (field,value) of interest.
I think metric learning and/or conditional random fields (CRF) could be of a great help, but I have not practical experience with them.
Does anyone have already encounter a similar problem?
Any suggestion or literature on this topic?
Your task, if I understand correctly, is to extract all pre-defined entities from a text. What you describe here is exactly named entity recognition.
Stanford has a Stanford Named Entity Recognizer that you can download and use (python/java and more)
Regarding the models you considers (CRF for example) - the hard thing here is to get the training data - sentences with the entities already labeled. This is why you should consider getting a trained model, or use someone else's data to train your model (again, the model will recognize only entities it saw in the training part)
A great choice for already train model in python is nltk's Information Extraction module.
Hope this sums it up