I am processing a sequence in chunks, where the last chunk may be shorter, and would like to show progress bar showing the number of items. The straightforward approach is
import tqdm, math
total=567
chunkSize=100
# each pass process items i0…max(i0+chunkSize,total)
for i0 in tqdm.tqdm(range(0,total,chunkSize)): pass
resulting in showing the number of chunks, not of the items, of course:
100%|█████████████████████████████████| 6/6 [00:00<00:00, 75121.86it/s]
Somewhat better options are
for i0 in tqdm.tqdm(range(0,total,chunkSize),unit_scale=chunkSize,total=total/chunkSize): pass
for i0 in tqdm.tqdm(range(0,total,chunkSize),unit_scale=float(chunkSize),total=total/chunkSize): pass
for i0 in tqdm.tqdm(range(0,total,chunkSize),unit_scale=chunkSize,total=math.ceil(total/chunkSize)): pass
which respectively give:
106%|██████████████████████████████████| 600.0/567.0 [00:00<00:00, 6006163.25it/s]
106%|██████████████████████████████████| 600/567.0 [00:00<00:00, 5264816.74it/s]
100%|██████████████████████████████████| 600/600 [00:00<00:00, 4721542.96it/s]
where those going over 100% show understandably
tqdm/std.py:533: TqdmWarning: clamping frac to range [0, 1]
So what I need is progress bar which will show the number of items (not chunks), correct percentages and will also correctly show the max value, not rounded to the chunk size. Ideas?
Variable chunk size? Could handle this manually with tqdm.tqdm.update:
import tqdm
total = 567
chunkSize = 100
with tqdm.tqdm(total=total) as pbar:
# each pass process items i0…min(i0 + chunkSize, total)
for i0 in range(0, total, chunkSize):
end = min(i0 + chunkSize, total)
do_something(start=i0, end=end)
pbar.update(end - i0)
Related
I have a 2D JAX array containing an image.
For each pixel P[y, x] of the image, I would like to loop over all pixels P[y, x-i] to the left of that pixel and reduce those to a single value. The exact reduction computation involves finding a particular maximum over a weighted sum involving those pixels' values, as well as i and x. Therefore, the result (or any intermediate results) for P[y, x] can't be reused for P[y, x+1] either; this is an O(x²y) operation overall.
Can I accomplish this somewhat efficiently in JAX? If so, how?
JAX does not provide any native tool to do this sort of operation for an arbitrary function. It can be done via lax.scan or perhaps jnp.cumsum for functions where each successive value can be computed from the last, but it sounds like that is not the case here.
I believe the best you can do is to combine vmap with Python for-loops to achieve what you want: just be aware that during JIT compilation JAX will flatten all for loops, so if your image size is very large, the compilation time will be long. Here's a short example:
import jax.numpy as jnp
from jax import vmap
def reduction(x):
# some 1D reduction
assert x.ndim == 1
return len(x) + jnp.sum(x)
def cumulative_apply(row, reduction=reduction):
return jnp.array([reduction(row[:i]) for i in range(1, len(row) + 1)])
P = jnp.arange(20).reshape(4, 5)
result = vmap(cumulative_apply)(P)
print(result)
# [[ 1 3 6 10 15]
# [ 6 13 21 30 40]
# [11 23 36 50 65]
# [16 33 51 70 90]]
Is there a way to vectorize this FOR loop I know about gallery ("circul",y) thanks to user carandraug
but this will only shift the cell over to the next adjacent cell I also tried toeplitz but that didn't work).
I'm trying to make the shift adjustable which is done in the example code with circshift and the variable shift_over.
The variable y_new is the output I'm trying to get but without having to use a FOR loop in the example (can this FOR loop be vectorized).
Please note: The numbers that are used in this example are just an example the real array will be voice/audio 30-60 second signals (so the y_new array could be large) and won't be sequential numbers like 1,2,3,4,5.
tic
y=[1:5];
[rw col]= size(y); %get size to create zero'd array
y_new= zeros(max(rw,col),max(rw,col)); %zero fill new array for speed
shift_over=-2; %cell amount to shift over
for aa=1:length(y)
if aa==1
y_new(aa,:)=y; %starts with original array
else
y_new(aa,:)=circshift(y,[1,(aa-1)*shift_over]); %
endif
end
y_new
fprintf('\nfinally Done-elapsed time -%4.4fsec- or -%4.4fmins- or -%4.4fhours-\n',toc,toc/60,toc/3600);
y_new =
1 2 3 4 5
3 4 5 1 2
5 1 2 3 4
2 3 4 5 1
4 5 1 2 3
Ps: I'm using Octave 4.2.2 Ubuntu 18.04 64bit.
I'm pretty sure this is a classic XY problem where you want to calculate something and you think it's a good idea to build a redundant n x n matrix where n is the length of your audio file in samples. Perhaps you want to play with autocorrelation but the key point here is that I doubt that building the requested matrix is a good idea but here you go:
Your code:
y = rand (1, 3e3);
shift_over = -2;
clear -x y shift_over
tic
[rw col]= size(y); %get size to create zero'd array
y_new= zeros(max(rw,col),max(rw,col)); %zero fill new array for speed
for aa=1:length(y)
if aa==1
y_new(aa,:)=y; %starts with original array
else
y_new(aa,:)=circshift(y,[1,(aa-1)*shift_over]); %
endif
end
toc
my code:
clear -x y shift_over
tic
n = numel (y);
y2 = y (mod ((0:n-1) - shift_over * (0:n-1).', n) + 1);
toc
gives on my system:
Elapsed time is 1.00379 seconds.
Elapsed time is 0.155854 seconds.
Given input signal x (e.g. a voltage, sampled thousand times per second couple of minutes long), I'd like to calculate e.g.
/ this is not q
y[3] = -3*x[0] - x[1] + x[2] + 3*x[3]
y[4] = -3*x[1] - x[2] + x[3] + 3*x[4]
. . .
I'm aiming for variable window length and weight coefficients. How can I do it in q? I'm aware of mavg and signal processing in q and moving sum qidiom
In the DSP world it's called applying filter kernel by doing convolution. Weight coefficients define the kernel, which makes a high- or low-pass filter. The example above calculates the slope from last four points, placing the straight line via least squares method.
Something like this would work for parameterisable coefficients:
q)x:10+sums -1+1000?2f
q)f:{sum x*til[count x]xprev\:y}
q)f[3 1 -1 -3] x
0n 0n 0n -2.385585 1.423811 2.771659 2.065391 -0.951051 -1.323334 -0.8614857 ..
Specific cases can be made a bit faster (running 0 xprev is not the best thing)
q)g:{prev[deltas x]+3*x-3 xprev x}
q)g[x]~f[3 1 -1 -3]x
1b
q)\t:100000 f[3 1 1 -3] x
4612
q)\t:100000 g x
1791
There's a kx white paper of signal processing in q if this area interests you: https://code.kx.com/q/wp/signal-processing/
This may be a bit old but I thought I'd weigh in. There is a paper I wrote last year on signal processing that may be of some value. Working purely within KDB, dependent on the signal sizes you are using, you will see much better performance with a FFT based convolution between the kernel/window and the signal.
However, I've only written up a simple radix-2 FFT, although in my github repo I do have the untested work for a more flexible Bluestein algorithm which will allow for more variable signal length. https://github.com/callumjbiggs/q-signals/blob/master/signal.q
If you wish to go down the path of performing a full manual convolution by a moving sum, then the best method would be to break it up into blocks equal to the kernel/window size (which was based on some work Arthur W did many years ago)
q)vec:10000?100.0
q)weights:30?1.0
q)wsize:count weights
q)(weights$(((wsize-1)#0.0),vec)til[wsize]+) each til count v
32.5931 75.54583 100.4159 124.0514 105.3138 117.532 179.2236 200.5387 232.168.
If your input list not big then you could use the technique mentioned here:
https://code.kx.com/q/cookbook/programming-idioms/#how-do-i-apply-a-function-to-a-sequence-sliding-window
That uses 'scan' adverb. As that process creates multiple lists which might be inefficient for big lists.
Other solution using scan is:
q)f:{sum y*next\[z;x]} / x-input list, y-weights, z-window size-1
q)f[x;-3 -1 1 3;3]
This function also creates multiple lists so again might not be very efficient for big lists.
Other option is to use indices to fetch target items from the input list and perform the calculation. This will operate only on input list.
q) f:{[l;w;i]sum w*l i+til 4} / w- weight, l- input list, i-current index
q) f[x;-3 -1 1 3]#'til count x
This is a very basic function. You can add more variables to it as per your requirements.
for my thesis I have to calculate the number of workers at risk of substitution by machines. I have calculated the probability of substitution (X) and the number of employee at risk (Y) for each occupation category. I have a dataset like this:
X Y
1 0.1300 0
2 0.1000 0
3 0.0841 1513
4 0.0221 287
5 0.1175 3641
....
700 0.9875 4000
I tried to plot a histogram with this command:
hist(dataset1$X,dataset1$Y,xlim=c(0,1),ylim=c(0,30000),breaks=100,main="Distribution",xlab="Probability",ylab="Number of employee")
But I get this error:
In if (freq) x$counts else x$density
length > 1 and only the first element will be used
Can someone tell me what is the problem and write me the right command?
Thank you!
It is worth pointing out that the message displayed is a Warning message, and should not prevent the results being plotted. However, it does indicate there are some issues with the data.
Without the full dataset, it is not 100% obvious what may be the problem. I believe it is caused by the data not being in the correct format, with two potential issues. Firstly, some values have a value of 0, and these won't be plotted on the histogram. Secondly, the observations appear to be inconsistently spaced.
Histograms are best built from one of two datasets:
A dataframe which has been aggregated grouped into consistently sized bins.
A list of values X which in the data
I prefer the second technique. As originally shown here The expandRows() function in the package splitstackshape can be used to repeat the number of rows in the dataframe by the number of observations:
set.seed(123)
dataset1 <- data.frame(X = runif(900, 0, 1), Y = runif(900, 0, 1000))
library(splitstackshape)
dataset2 <- expandRows(dataset1, "Y")
hist(dataset2$X, xlim=c(0,1))
dataset1$bins <- cut(dataset1$X, breaks = seq(0,1,0.01), labels = FALSE)
Algo question
Binary array of 0/1 given
In one operation i can flip any array[index] of array i.e. 0->1 or 1->0
so aim is to minimize the maximum lenth of continious 1's or 0's by using atmost k flips
eg if 11111 if array and k=1 ,best is to make array as 11011
And minimized value of maximum continous 1's or 0's is 2
for 111110111111 and k=3 ans is 2
I tried Brute Force (by trying various position flips) but its not efficient
I think Greedy ,but can not figure out exactly
can you please help me for algo,O(n) or similar
A solution could be devised by reading each bit in order and recording the size of each continuous group of 1 into a list A.
Once you are done filling A, you can follow the algorithm narrated by the pseudocode below:
result = N
for i = 1 to N
flips_needed = 0
for a in A:
flips_needed += <number of flips needed to make sure largest group remaining in a is of size i>
if k >= flips_needed:
result = flips_needed
break
return result
N is the number of bits in the entire initial sequence.
The algorithm above works by dividing the groups of 1 into sizes of at most i. Whenever doing that requires <= k, we have the result we are looking for, as i starts from 1 and goes up. (i.e. when we found flips_needed <= k, we know the groups of 1 are as minimal as they can get)