Is there a preferred way to setup cytoscape for off-line use? My little network of lab equipment isn't connected to the Internet. I have version 3.9.1 (linux) that seems to be working, but get Java complaints because it's trying to go to the Internet and can't. If there are configuration settings I can adjust to make it stop trying to go to the Internet that would be great. Maybe some kind of cheat-sheet for setting up an off-line installation?
On startup, Cytoscape checks to see if there is an update available. The error should not be fatal and should not impact Cytoscape operations at all. Are you having problems after it starts up?
-- scooter
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We would like to install Cytoscape on a server (Windows or Linux) and allow multiple users to connect simultaneously using a client software. Is this possible, and if so, what are requirements in regards to the server and the client software?
Certainly that's possible. There aren't any particular requirements, but keep in mind that for large networks, Cytoscape likes lots of memory. At any rate, we use X2Go on our Linux servers and it works really well for Cytoscape. Keep in mind, however, that a CytoscapeConfiguration directory will be created in each user's home and that apps and configuration information will be stored there.
I want to connect the PiCAN with my raspberry pi3 running windows IoT Core. I think I need a universal driver for the mcp2515 to work with the windows in Pi. I already tried using the instructions given in https://developer.microsoft.com/en-us/windows/iot/docs/driverdeployment to deploy the driver given in https://github.com/AustinWise/Mcp2515Can . But I got stuck in the instructions. I hope someone has already done this and maybe can help me with it? Did anyone successfully use this CAN board with Raspberry Pi (windows iot core)?
Thank you :)
Is a driver required in the first place?
Short answer is No.
Although a device driver is preferred, such work is not officially or community done yet.
The benefit you get from developing a device driver might include:
Native OS support for PiCAN board.
Create your create the custom IoT image, and deploy it to Microsoft store.
Possible performance improvements
others…
However, in order to develop an device driver, you need to follow the WDK framework. If you are comfortable with picking up new stuff, go ahead and try it out. You might need to refer to the linux source driver code for WDK driver developing.
If your purpose is to get the board working, you don’t need to get yourself into all these troubles.
In fact, you only need to get the SPI controller and GPIO controller, open the SPI device and initialize GPIO interrupt pin like Mcp2515Can does.
But, even after enabling the SPI, I couldn't receive anything on the
Raspberry Pi.
First, you can use Raspbian and turn on the CAN driver support to verify that you got all the wirings right. Here is the user guide you can reference.
If you can rule out the possibility of hardware failures, step into your C# code to troubleshoot the software.
Good luck.
I have looked on the internet but unable to find a solution that would fit my requirements and was wondering if someone could either direct me to a solution or guide me towards making a customized solution.
So here is the scenario, we have a machine that runs a screensaver. Occasionally we are required to update the file on the machine, the trouble is that a person has to go there physically to update the usb. is there a way to allow remote access (via the internet) to a usb storage device to update files?
It depends on the operating-system and network-conditions, but you should be able to connect to the machine via SSH and remotely access the USB-drive.
https://askubuntu.com/questions/50104/how-do-i-access-an-external-drive-mounted-on-a-machine-on-my-own-network
I hope that's enough to throw at Google combined with your specific environment.
I need to slow down (simulate bad) internet connection, I found some documentation where it was achieved by "ipfw pipe" command , the thing is that in latest MAC OS versions , ipfw was deprecated (and removed)...
I was wondering if there are any alternative to the ipfw API ?
Does anyone know how latest Network Link Conditioner achieves it?
The original previous way which enabled to slow down an internet connection :
sudo ipfw pipe 1 config bw 56Kbit/s delay 200 plr 0.2
and to clear the pipe :
sudo ipfw delete 1
Thanks.
I don't know much about Mac OS (I use Linux myself), but I'll give this a shot.
A bunch of digging established that ipfw seems unavailable, as you say.
I was also unable to find a way to use the Network Link Conditioner from the command line. Everything should be usable from the command line, so that's stupid.
One work around would be to try to access the NLC from within AppleScript. The following will get you started on toggling the NLC:
property thePane : "com.apple.Network-Link-Conditioner"
tell application "System Preferences"
activate
set the current pane to pane id thePane
--delay 2
end tell
---
tell application "System Events"
tell application process "System Preferences"
try
click ((checkboxes of window "Network Link Conditioner") whose description is "enable switch")
on error
click ((checkboxes of window "Network Link Conditioner") whose description is "enable switch")
end try
end tell
end tell
I think that you can run a script from the terminal with osascript <SCRIPT>.
As an alternative, Charles Proxy is a pay-to-use program that can be used to perform throttling, provided you can convince the software you are testing to connect to the proxy's port rather than directly to the internet. Maybe there are free proxy solutions out there somewhere?
Perhaps Squid would work in that regard. SquidMan seems to be an easy-ish way to install it for Mac. It looks as though DelayPools and or Client Bandwidth Limits might be useful for simulating a low speed connection, though I can't find evidence of people having used them for such.
I found several solutions that might work. They come from some old threads, but they might help:
How to simulate slow internet connections on the mac
Apple has made a very handy official tool to slow down the network connections on you Mac for testing purposes.
The Network Link Conditioner preference is a free download from within Xcode (for Lion and later OS). Additionally, iOS has similar function accessible from within Xcode and iOS 6 or later.
How do I simulate a bad Wi-Fi connection on my iPad?
There are a few ways you can do this, depending on your situation:
Move further away from your router. While this may seem a bit obvious, I realize that it isn't always possible while testing/debugging (for example, if you are working on a desktop computer).
Put aluminum foil around the router and/or antenna. This will (partially) block some or all of the radio signals by creating a makeshift Faraday cage. The results you get will depend on the strength of your router signal, distance from the router, and other environmental factors.
Set your router's wireless signal power to a lower setting. The method for doing this is different for each router, so you will have to look at the user guide for instructions on how to do this.
Slow down internet for iOS simulator
You can set the network to slow characteristic by testing on devices. Go to Settings -> Developer Settings -> Network Link Conditioner -> Enable. This is for iPhone/iPad running iOS 6
I don't know if the last one you can still do.
I've used many methods in the past for slowing down network connections, among them:
performing a parallel download of some massive Linux ISO file;
physically pulling out the Ethernet cable (at one point, I actually toyed with the idea of building a push-button device that would sit between two cat5 cables and do this without having to physically disconnect the whole cable).
using ifconfig eth0 down ; sleep 1 ; ifconfig eth0 up.
Hopefully one or more of those methods will help.
If you're looking to slow down your network connection because you're doing testing/profiling work, one option is to get a specific device that can create network latency/noise.
For example Apposite Tech's mini2 WAN emulator allows you to change values for bandwidth and packet loss. You can roll your own device too using something like: http://wanem.sourceforge.net/ . It just depends on your needs, time and budget.
I'm planning on writing a control panel for Minecraft in Rails but I don't have much experience with Java at all, Minecraft seems to have some standard remote connection and query tools, but most conventional panels don't seem to use them. For example with McMyAdmin, I have disabled remote connectiona and the query, but it still seems to be able to communicate with the server after restarting it after I've edited the server configs to disable the settings.
What I'm asking is if anyone knows how McMyAdmin communicates with the Minecraft server, it comes with a plugin, but I've deleted that as well and it still seems to be able to communicate with the server, I know McMyAdmin is written in .NET and I believe it uses Mono as it's server, as it's cross platform.
If anybody could shed some light on this I'd be ever so greatful, just trying to get my head around the communication.
McMyAdmin uses the plugin to open a socket that it can interact with(Not sure which features are provided using this plugin). The rest of the features are just from the Process instance that it creates. It also just edits the config files for a few things as well or runs commands using the input stream of the process.