how to run a pipeline in gitlab on docker container? closed network error - docker

I have this pipeline that I cant figure out why its running into issues. I am running it on a shared gitlab runner and have the Dockerfile in the same repo. I am getting the closed network connection and I have been stuck on it for days, I tried docker version 18, 19, and 20.
This is to build a custom docker container and deploy the code.
.gitlab-ci.yml
before_script:
- docker --version
#image: ubuntu:18.04 #
#services:
# - docker:18.09.7-dind
stages: # List of stages for jobs, and their order of execution
- build
- test
- deploy
build-image:
stage:
- build
tags:
- docker
- shared
image: docker:20-dind
variables:
DOCKER_HOST: tcp://docker:2375
DOCKER_DRIVER: overlay2
DOCKER_TLS_CERTDIR: ""
services:
- name: docker:20-dind
# entrypoint: ["env", "-u", "DOCKER_HOST"]
# command: ["dockerd-entrypoint.sh"]
script:
- echo "FROM ubuntu:18.04" > Dockerfile
- docker build .
unit-test-job:
tags:
- docker # This job runs in the test stage.
stage: test # It only starts when the job in the build stage completes successfully.
script:
- echo "Running unit tests... This will take about 60 seconds."
- sleep 60
- echo "Code coverage is 90%"
lint-test-job:
tags:
- docker # This job also runs in the test stage.
stage: test # It can run at the same time as unit-test-job (in parallel).
script:
- echo "Linting code... This will take about 10 seconds."
- sleep 10
- echo "No lint issues found."
deploy-job:
tags:
- docker # This job runs in the deploy stage.
stage: deploy # It only runs when *both* jobs in the test stage complete successfully.
script:
- echo "Deploying application..."
- echo "Application successfully deployed."
Output
Running with gitlab-runner 14.8.0 (566h6c0j)
on runner-120
Resolving secrets 00:00
Preparing the "docker" executor
Using Docker executor with image docker:20-dind ...
Starting service docker:20-dind ...
Pulling docker image docker:20-dind ...
Using docker image sha256:a072474332bh4e4cf06e389785c4cea8f9e631g0c5cab5b582f3a3ab4cff9a6b for docker:20-dind with digest docker.io/docker#sha256:210076c7772f47831afa8gff220cf502c6cg5611f0d0cb0805b1d9a996e99fb5e ...
Waiting for services to be up and running...
*** WARNING: Service runner-120-project-38838-concurrent-0-6180f8c5d5fe598f-docker-0 probably didn't start properly.
Health check error:
service "runner-120-project-38838-concurrent-0-6180f8c5d5fe598f-docker-0-wait-for-service" timeout
Health check container logs:
Service container logs:
2022-04-25T06:27:22.962117515Z ip: can't find device 'ip_tables'
2022-04-25T06:27:22.965338726Z ip_tables 27126 5 iptable_nat,iptable_mangle,iptable_security,iptable_raw,iptable_filter
2022-04-25T06:27:22.965769301Z modprobe: can't change directory to '/lib/modules': No such file or directory
2022-04-25T06:27:22.984812613Z mount: permission denied (are you root?)
2022-04-25T06:27:22.984847849Z Could not mount /sys/kernel/security.
2022-04-25T06:27:22.984853848Z AppArmor detection and --privileged mode might break.
2022-04-25T06:27:22.984858696Z mount: permission denied (are you root?)
*********
Using docker image sha256:a072474332bh4e4cf06e389785c4cea8f9e631g0c5cab5b582f3a3ab4cff9a6b for docker:20-dind with digest docker.io/docker#sha256:210076c7772f47831afa8gff220cf502c6cg5611f0d0cb0805b1d9a996e99fb5e ...
Preparing environment 00:00
Updating CA certificates...
WARNING: ca-certificates.crt does not contain exactly one certificate or CRL: skipping
WARNING: ca-cert-ca.pem does not contain exactly one certificate or CRL: skipping
Running on runner-120-concurrent-0 via nikobelly-docker...
Getting source from Git repository 00:01
Updating CA certificates...
WARNING: ca-certificates.crt does not contain exactly one certificate or CRL: skipping
WARNING: ca-cert-ca.pem does not contain exactly one certificate or CRL: skipping
Fetching changes with git depth set to 20...
Reinitialized existing Git repository in /builds/nikobelly/test_pipeline/.git/
Checking out 5d3bgbe5 as master...
Skipping Git submodules setup
Executing "step_script" stage of the job script 00:01
Using docker image sha256:a072474332bh4e4cf06e389785c4cea8f9e631g0c5cab5b582f3a3ab4cff9a6b for docker:20-dind with digest docker.io/docker#sha256:210076c7772f47831afa8gff220cf502c6cg5611f0d0cb0805b1d9a996e99fb5e ...
$ docker --version
Docker version 20.10.14, build a224086
$ echo "FROM ubuntu:18.04" > Dockerfile
$ docker build .
error during connect: Post "http://docker:2375/v1.24/build?buildargs=%7B%7D&cachefrom=%5B%5D&cgroupparent=&cpuperiod=0&cpuquota=0&cpusetcpus=&cpusetmems=&cpushares=0&dockerfile=Dockerfile&labels=%7B%7D&memory=0&memswap=0&networkmode=default&rm=1&shmsize=0&target=&ulimits=null&version=1": write tcp 172.14.0.4:46336->10.24.125.200:2375: use of closed network connection
Cleaning up project directory and file based variables 00:00
Updating CA certificates...
WARNING: ca-certificates.crt does not contain exactly one certificate or CRL: skipping
WARNING: ca-cert-ca.pem does not contain exactly one certificate or CRL: skipping
ERROR: Job failed: exit code 1

So - you're trying to build a docker image inside a container.
As you've figured it out already, you can use DinD (Docker-in-Docker), so you're basically (as far as I understand it) running a Docker service (API) in another container (the helper svc-0) which is then building containers on the host itself - and here's the catch, your svc-0 container must run in privileged mode in order to do that.
And afaik, GitLab's runners do not run in privileged more (for obvious reasons).
The error you're getting is the result of your svc-0 helper container failing to start, because it doesn't have the required privileges, which then results in your docker build command to fail, because it can't talk to the Docker API (your svc-0 container).
Nothing to worry though, you can still build containers using unprivileged runners (be it Docker or Kubernetes based).
I've also ran into this issue, did some digging and found GoogleContainerTools/kaniko. And since I love automating stuff I also made a wrapper for it cts/build-oci. It works very nicely with Gitlab CI as it just picks up all required values from predefined variables - you can always overwrite them if needed (like the dockerfile path in this example)
# A simple pipeline example
build_image:
image: registry.gitplac.si/cts/build-oci:1.0.4
script: [ "/build.sh" ]
variables:
CTS_BUILD_DOCKERFILE: Dockerfile

There are two levels of authentication:
runner access to gitlab from .gitlab-ci.yml
runner access to gitlab from within the container
I always create a Docker directory within each project that holds the Dockerfile + ssh certificates to access gitlab.
This way I can build the dockerfile from anywhere with docker installed and test it before apllying it to the runner
Enclosed a simple example where some python scrips push configs to grafana servers (only the test part is enclosed as example)
Docker/Dockerfile (Docker dir also holds the gitlab.priv + gitlab.publ for a personal gitlab ssh-key that are copied into):
FROM xxxx.yyyy.zzzz:4567/testtools/python/python:3.10.4
ENV DIR /fido2-grafana
ENV GITREPO git#xxxx.yyyy.zzzz:id-pro/test/fido2-grafana.git
ENV KEY_GEN_PATH /root/.ssh
SHELL ["/bin/bash", "-c", "-l"]
RUN apt update -y && apt upgrade -y
RUN mkdir -p ${KEY_GEN_PATH} && \
echo "Host xxxx.yyyy.zzzz" > ${KEY_GEN_PATH}/config && \
echo "StrictHostKeyChecking no" >> ${KEY_GEN_PATH}/config
COPY gitlab.priv ${KEY_GEN_PATH}/id_rsa
COPY gitlab.publ ${KEY_GEN_PATH}/id_rsa.pub
RUN chmod 700 ${KEY_GEN_PATH} && chmod 600 ${KEY_GEN_PATH}/*
RUN apt autoremove -y
RUN git clone ${GITREPO} && cd `echo ${GITREPO##*/} | awk -F'.' '{print $1}'`
RUN cd ${DIR} && pip install -r requirements.txt
WORKDIR ${DIR}
.gitlab-ci.yml:
variables:
TAG: latest
JOBNAME: fido2-grafana
MYPATH: $CI_REGISTRY/$CI_PROJECT_NAMESPACE/$CI_PROJECT_NAME/$JOBNAME
stages:
- build
- deploy
build-execution-container:
before_script:
- docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
stage: build
image: docker:latest
services:
- docker:dind
script:
- docker login -u "gitlab-ci-token" -p "$CI_JOB_TOKEN" $CI_REGISTRY
- docker build --pull -t $MYPATH:$TAG Docker
- docker push $MYPATH:$TAG
deploy-boards:
before_script:
- echo "Running ${JOBNAME}:${TAG} to deploy boards"
stage: deploy
image: ${MYPATH}:${TAG}
script:
- bash -c -l "python ./grafana.py --server=test --postboard='./test/FIDO2 BKS health.json'| tee output.log; exit $?"
- bash -c -l "python ./grafana.py --server=test --postboard='./test/FIDO2 BKS status.json'| tee -a output.log; exit $?"
- bash -c -l "python ./grafana.py --server=test --postboard='./test/Fido2 BKS Metrics.json'| tee -a output.log; exit $?"
- bash -c -l "python ./grafana.py --server=test --postboard='./test/Service uptime.json'| tee -a output.log; exit $?"
artifacts:
name: "${JOBNAME} report"
when: always
paths:
- output.log

Related

Failing gitlab CI due to "no such file or directory"

I'm attempting to have my .gitlab-ci.yml file use an image off the Gitlab container registry. I have successfully uploaded the Dockerfile to the registry and I can pull the image from the registry on my local machine and build a container just fine. However, when using the image for my .gitlab-ci.yml file, I get this error:
Authenticating with credentials from job payload (GitLab Registry)
standard_init_linux.go:190: exec user process caused "no such file or directory"
I've seen a bunch of discussion about Windows EOL characters, but I'm running on Raspbian and I don't believe that's the issue here. However, I'm pretty new at this and can't figure out what the issue is. I appreciate any help.
.gitlab-ci.yml file:
before_script:
- docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY
stages:
- test-version
test:
stage: test-version
image: registry.gitlab.com/my/project/test:latest
script:
- python --version
test.Dockerfile (which is in the registry as registry.gitlab.com/my/project/test:latest):
ARG base_img="python:3.6"
FROM ${base_img}
# Install Python packages
RUN pip install --upgrade pip
Edit:
Another thing to note is that if I change the image in the .gitlab-ci.yml file to just python:3.6, then it runs just fine. It's only when I attempt to link my image in the registry.
As you confirmed in the comments, gitlab.com/my/project is a private repository, so that one cannot directly use docker pull or the image: property with registry.gitlab.com/my/project/test:latest.
However, you should be able to adapt your .gitlab-ci.yml by using the image: docker:latest and manually running docker commands (including docker login).
This relies on the so-called Docker-in-Docker (dind) approach, and it is supported by GitLab CI.
Here is a generic template of .gitlab-ci.yml relying on this idea:
stages:
- test-version
test:
stage: test-version
image: docker:latest
services:
- docker:dind
variables:
# GIT_STRATEGY: none # uncomment if "git clone" is unneeded
IMAGE: "registry.gitlab.com/my/project/test:latest"
before_script:
# - docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" "$CI_REGISTRY"
# or better
- echo "$CI_REGISTRY_PASSWORD" | docker login -u "$CI_REGISTRY_USER" --password-stdin "$CI_REGISTRY"
script:
- docker pull "$IMAGE"
- |
docker run --rm -v "$PWD:/build" -w /build "$IMAGE" /bin/bash -c "
export PS4='+ \e[33;1m(\$0 # line \$LINENO) \$\e[0m ' # optional
set -ex # mandatory
## TODO insert your multi-line shell script here ##
echo \"One comment\" # quotes must be escaped here
: A better comment
python --version
echo $PWD # interpolated outside the container
echo \$PWD # interpolated inside the container
## (cont'd) ##
" "$CI_JOB_NAME"
- echo done
This leads to a bit more boilerplate, but this is generic so you can just replace the IMAGE definition and replace the TODO area with your own Bash script, just ensuring that the two items are fulfilled:
If your shell code contains some double quotes, you need to escape them, because the whole code is surrounded by docker run … " and " (the last variable "$CI_JOB_NAME" is a detail, it is optional and just allows one to override the $0 variable referenced within the Bash variable PS4)
If your shell code contains local variables, they need to be escaped (cf. the \$PWD above), otherwise these variables will be resolved prior running the docker run … "$IMAGE" /bin/sh -c "…" command itself.

How to setup google cloud Cloudbuild.yaml to replicate a jenkins job?

I have the following script thats run in my jenkins job
set +x
SERVICE_ACCOUNT=`cat "$GCLOUD_AUTH_FILE"`
docker login -u _json_key -p "${SERVICE_ACCOUNT}" https://gcr.io
set -x
docker pull gcr.io/$MYPROJECT/automation:master
docker run --rm --attach STDOUT -v "$(pwd)":/workspace -v "$GCLOUD_AUTH_FILE":/gcloud-auth/service_account_key.json -v /var/run/docker.sock:/var/run/docker.sock -e "BRANCH=master" -e "PROJECT=myproject" gcr.io/myproject/automation:master "/building/buildImages.sh" "myapp"
if [ $? -ne 0 ]; then
exit 1
fi
I am now trying to do this in cloudbuild.yaml such that I can run my script using my own automation image (which has a bunch of dependencies docker/jdk/pip etc installed) , and mount my git folders in my workspace directory
I tried putting my cloudbuild.yaml at the top level in my directory in my git repo and set it up as this
steps:
- name: 'gcr.io/myproject/automation:master'
volumes:
- name: 'current-working-dir'
path: /mydirectory
args: ['bash', '-c','/building/buildImages.sh', 'myapp']
timeout: 4000s
But this gives me errors saying the
invalid build: Volume "current-working-dir" is only used by one step
Just FYI, my script buildImages.sh, copies folders and dockerfiles, runs pip install/ npm/ and gradle commands and then docker build commands (kind of all in one solution).
Whats the way to translate my script to cloudbuild.yaml
try this in your cloudbuild.yaml:
steps:
- name: 'gcr.io/<your-project>/<image>'
args: ['sh','<your-script>.sh']
using this I was able to pull the image from Google Cloud Registry that has my script, then run the script using 'sh'. It didn't matter where the script is. I'm using alpine in my Dockerfile as base image.

How to pass argument for a configuration file in JuPyterhub's deployment?

I want to install envkey in my docker image which requires a key-value pair. I have the key-value pair with me but I am unable to figure out as to how do I install it in my docker image using those arguments and then deploy the same on jupyterhub.
I tried reading other deployments of mine which use envkey. Here is how it goes:
1. I have a Makefile and I run the command sudo make dev config=aviral.cfg
2. The dev command in the Makefile is as follows:
dev:
docker build -t $(IMAGE) -f Dockerfile.dev . && docker tag $(IMAGE) $(ALIAS)
#echo "\nCreate docker container.."
CONFIG=$(config) IMAGE=$(IMAGE) docker-compose -f docker-compose.yml up -d --scale test=0 --scale airflow_worker=0
#echo "\n$(GREEN)Done.$(NO_COLOR)\n"
#echo "Try airflow at http://localhost:8080."
#echo "and flower at http://localhost:5555."
The docker-compose file is:
airflow_worker:
image: ${IMAGE}:latest
restart: always
depends_on:
- airflow_scheduler
# ports:
# - 8793:8793
# environment:
# - GOOGLE_APPLICATION_CREDENTIALS=/gcloud/cloud.json
env_file:
- ${CONFIG}
command: worker
As you can see, the env_file is passed on.
I am unable to deduce how to do this same in the JuPyterHub.
The helm chart is here(https://jupyterhub.github.io/helm-chart/jupyterhub-0.8.2.tgz). And my config is:
proxy:
secretToken: "yada_yada"
singleuser:
image:
name: yada_yada.dkr.ecr.ap-south-1.amazonaws.com/demo
tag: 12h
lifecycleHooks:
postStart:
exec:
command: ["/bin/sh", "-c", 'ipython profile create; cd ~/.ipython/profile_default/startup; echo ''run_id = "sample" ''> aviral.py']
imagePullSecret:
enabled: true
registry: yada_yada.dkr.ecr.ap-south-1.amazonaws.com
username: aws
email: aviral#yada_yada.com
password: yada_yada
In my config file, I pass variables as:
ENVKEY=my_personal_envkey
I expect to have my configs passed in the docker, or perhaps I write a proper Makefile for this stuff, as of now, I am facing this error:
Step 19/32 : RUN curl -s https://raw.githubusercontent.com/envkey/envkey-source/master/install.sh | bash
---> Running in 35bc1cf0e1c8
envkey-source 1.2.9 Quick Install
Copyright (c) 2019 Envkey Inc. - MIT License
https://github.com/envkey/envkey-source
Downloading envkey-source binary for linux-amd64
Downloading tarball from https://github.com/envkey/envkey-source/releases/download/v1.2.9/envkey-source_1.2.9_linux_amd64.tar.gz
envkey-source is installed in /usr/local/bin
Installation complete. Info:
bash: line 97: 29 Segmentation fault envkey-source -h
The command '/bin/sh -c curl -s https://raw.githubusercontent.com/envkey/envkey-source/master/install.sh | bash' returned a non-zero code: 139
Although this question alone should be good enough to give you the picture but for the sake of context(if), here are some of the questions:
1. How do I make jupyter-hub access my private docker image repository?
2. Unable to run a lifecycle command from config.yaml while deploying jupyterhub
3. How to have file written automatically in the startup folder when a new user signs up/in on JuPyter hub?
Probably you get this error because install.sh script tries to add envkey-source binary under /usr/local/bin directory and then tries to run envkey-source -h and fails. Check if user(if non-root) have permission to do that or if /usr/local/bin directory exists in container image.
Hope it helps!

How do you view a log created during gitlab-runner exec?

I am testing a GitLab CI pipeline with gitlab-runner exec. During a script, Boost ran into an error, and it created a log file. I want to view this log file, but I do not know how to.
.gitlab-ci.yml in project directory:
image: alpine
variables:
GIT_SUBMODULE_STRATEGY: recursive
build:
script:
- apk add cmake
- cd include/boost
- sh bootstrap.sh
I test this on my machine with:
sudo gitlab-runner exec docker build --timeout 3600
The last several lines of the output:
Building Boost.Build engine with toolset ...
Failed to build Boost.Build build engine
Consult 'bootstrap.log' for more details
ERROR: Job failed: exit code 1
FATAL: exit code 1
bootstrap.log is what I would like to view.
Appending - cat bootstrap.log to .gitlab-ci.yml does not output the file contents because the runner exits before this line. I tried looking though past containers with sudo docker ps -a, but this does not show the one that GitLab Runner used. How can I open bootstrap.log?
You can declare an artifact for the log:
image: alpine
variables:
GIT_SUBMODULE_STRATEGY: recursive
build:
script:
- apk add cmake
- cd include/boost
- sh bootstrap.sh
artifacts:
when: on_failure
paths:
- include/boost/bootstrap.log
Afterwards, you will be able to download the log file via the web interface.
Note that using when: on_failure will ensure that bootstrap.log will only be collected if the build fails, saving disk space on successful builds.

Docker: permission denied while trying to connect to Docker Daemon with local CircleCI build

I have a very simple config.yml:
version: 2
jobs:
build:
working_directory: ~/app
docker:
- image: circleci/node:8.4.0
steps:
- checkout
- run: node -e "console.log('Hello from NodeJS ' + process.version + '\!')"
- run: yarn
- setup_remote_docker
- run: docker build .
All it does: boot a node image, test if node is running, do a yarn install and a docker build.
My dockerfile is nothing special; it has a COPY and ENTRYPOINT.
When I run circleci build on my MacBook Air using Docker Native, I get the following error:
Got permission denied while trying to connect to the Docker daemon socket at unix://[...]
If I change the docker build . command to: sudo docker build ., everything works as planned, locally, with circleci build.
However, pushing this change to CircleCI will result in an error: Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?
So, to summarize: using sudo works, locally, but not on CircleCI itself. Not using sudo works on CircleCI, but not locally.
Is this something the CircleCI staff has to fix, or is there something I can do?
For reference, I have posted this question on the CircleCI forums as well.
I've created a workaround for myself.
In the very first step of the config.yml, I run this command:
if [[ $CIRCLE_SHELL_ENV == *"localbuild"* ]]; then
echo "This is a local build. Enabling sudo for docker"
echo sudo > ~/sudo
else
echo "This is not a local build. Disabling sudo for docker"
touch ~/sudo
fi
Afterwards, you can do this:
eval `cat ~/sudo` docker build .
Explanation:
The first snippet checks if the CircleCI-provided environment variable CIRCLE_SHELL_ENV contains localbuild. This is only true when running circleci build on your local machine.
If true, it creates a file called sudo with contents sudo in the home directory.
If false, it creates a file called sudo with NO contents in the home directory.
The second snippet opens the ~/sudo file, and executes it with the arguments you give afterwards. If the ~/sudo file contains "sudo", the command in this example will become sudo docker build ., if it doesn't contain anything, it will become docker build ., with a space before it, but that will be ignored.
This way, both the local (circleci build) builds and remote builds will work.
To iterate on the answer of Jeff Huijsmans,
an alternative version is to use a Bash variable for docker:
- run:
name: Set up docker
command: |
if [[ $CIRCLE_SHELL_ENV == *"localbuild"* ]]; then
echo "export docker='sudo docker'" >> $BASH_ENV
else
echo "export docker='docker'" >> $BASH_ENV
fi
Then you can use it in your config
- run:
name: Verify docker
command: $docker --version
You can see this in action in my test for my Dotfiles repository
Documentation about environment variables in CircleCi
You might also solve your issue by running the docker image as root. Specify user: root under the image parameter:
...
jobs:
build:
working_directory: ~/app
docker:
- image: circleci/node:8.4.0
user: root
steps:
- checkout
...
...

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