I am new here and trying to get around functional enrichment using StringApp (1.5.0) and Cytoscape (3.7.2). I am following the available tutorial https://cytoscape.org/cytoscape-tutorials/protocols/differentially-expressed-genes/#/8, but I always get the error message that "Enrichment retrieval returned no results, possibly due to an error" in Cytoscape. I have tried with another tutorial dataset, still get the same issue.
Anyone who can help?
Thank you!
Mélanie
I am getting this error today too. Retrieving proteins in Cytoscape through the String app still works fine, it seems to be related specifically to functional enrichment.
Related
I am trying to train Facebook's prophet on timeseries data.
Data I used, one column named ds and another y
During fitting however I get this error first :
first error screenshot
followed by
second error screenshot
Does anyone know why this is the case? Thanks!
I tried searching for the problem online and could not find a solution. I tried installing cmdstanpy version 0.9.5 and reinstalling prophet but it did not work so I am a bit stuck. I am running python 3.7.12 version.
We were previously running Beam 2.11.0 which started failing due to an apparent change in URN format. When I attempted to update and use the latest release (2.13.0) the pipeline started timing out, and the only seemingly relevant error that I could identify from the logs during testing was:
org.apache.beam.vendor.grpc.v1p13p1.com.google.protobuf.InvalidProtocolBufferException: While parsing a protocol message, the input ended unexpectedly in the middle of a field. This could mean either that the input has been truncated or that an embedded message misreported its own length.
To further test this, I attempted to use the wordcount example as provided in the Beam docs/repo here - https://beam.apache.org/get-started/wordcount-example/ - But I got the same result. I'm not sure if this is a generic error or something to do with Dataflow. The pipelines seem to work when running via direct runner.
Note: I have rebuilt our worker_harness_container_image with the latest version.
I understand the Go SDK is not officially supported by Dataflow, but could anybody tell me if the error is something related to Dataflow or some other issue?
PS: I've asked the question in Dataflow and Beam Slack channels but haven't had any response.
I think my question is already asked, but I didn't find any topic about that.
When I try somme script with kivy, I have sometimes errors (such as undeclared variable, bad indentation...), but Qpython don't display them.
I lunch kivy with:
"#qpy:kivy"
and consequently, there is no console. A log is however present, but it's empty.
Is there a way to remedy this ?
Should I add a line to display error ?
Thanks
Simon
PS: The "print" command is also useful, but not working (no console). I think it's the same problem.
The newest 1.2.0 version had fixed this blank log issue.
I am using superfast-batch-importer for neo4j.
When importing the legacy indexing example's relationship file..
in the first line itself ....i got a NumberFormatException...
Neo4j jexp/batch-import weird error: java.lang.NumberFormatException
This questions talks about the issue.. but i dont see the fixes yet in the code
Can someone please let me know where to take the right binary if this is fixed?
Don't use that one, use the normal github.com/jexp/batch-import for 2.1 or wait for 2.2 milestone for something out of the box.
The superfast is not production ready and was known to create inconsistent stores.
i am trying to use the JasperReports plugin with my Grails app, but
unfortunately i am running into problems. I create a report with iReport, load that into my app and then when calling the report i get an error like:
'Invalid content was found starting with element 'paragraph'. No child
element is expected at this point'
I remove the paragraph elements and then it seems to work, but that
involves a manual modification outside of iReport.
I guess this is a non-Grails issue but also can imagine that people
are having the same problem.
Does anyone have a solution to this?