Stitching - ImageJ - imagej
Hello Stackoverflow community,
I have been using the stitching algorithms several times in the past with no issues. But right now, I always get error messages in the console - even if there is nothing wrong in the log. Then, the fused image is not displayed. I tried with different image types, or different stitching methods, but all of them lead to the same type of error message. Here is an example:
[ERROR] null
java.lang.NoSuchMethodException: Could not find method net.imglib2.type.NativeType.createSuitableNativeImg(Lnet/imglib2/img/NativeImgFactory;[J)Lnet/imglib2/img/NativeImg;
There was a problem with the class net.imglib2.type.NativeType which can be found here:
/C:/Fiji.app/jars/imglib2-5.3.0.jar
java.lang.NoSuchMethodError: net.imglib2.type.NativeType.createSuitableNativeImg(Lnet/imglib2/img/NativeImgFactory;[J)Lnet/imglib2/img/NativeImg;
at net.imglib2.img.imageplus.ImagePlusImgFactory.create(ImagePlusImgFactory.java:69)
at net.imglib2.img.imageplus.ImagePlusImgFactory.create(ImagePlusImgFactory.java:64)
at net.imglib2.img.ImgFactory.create(ImgFactory.java:174)
at mpicbg.stitching.fusion.OverlayFusion.createOverlay(OverlayFusion.java:176)
at plugin.Stitching_Pairwise.fuse(Stitching_Pairwise.java:481)
at plugin.Stitching_Pairwise.performPairWiseStitching(Stitching_Pairwise.java:448)
at plugin.Stitching_Pairwise.run(Stitching_Pairwise.java:299)
at ij.IJ.runUserPlugIn(IJ.java:233)
at ij.IJ.runPlugIn(IJ.java:196)
at ij.Executer.runCommand(Executer.java:150)
at ij.Executer.run(Executer.java:68)
at java.lang.Thread.run(Thread.java:745)
at net.imglib2.img.imageplus.ImagePlusImgFactory.create(ImagePlusImgFactory.java:69)
at net.imglib2.img.imageplus.ImagePlusImgFactory.create(ImagePlusImgFactory.java:64)
at net.imglib2.img.ImgFactory.create(ImgFactory.java:174)
at mpicbg.stitching.fusion.OverlayFusion.createOverlay(OverlayFusion.java:176)
at plugin.Stitching_Pairwise.fuse(Stitching_Pairwise.java:481)
at plugin.Stitching_Pairwise.performPairWiseStitching(Stitching_Pairwise.java:448)
at plugin.Stitching_Pairwise.run(Stitching_Pairwise.java:299)
at ij.IJ.runUserPlugIn(IJ.java:233)
at ij.IJ.runPlugIn(IJ.java:196)
at ij.Executer.runCommand(Executer.java:150)
at ij.Executer.run(Executer.java:68)
at java.lang.Thread.run(Thread.java:745)
I don't know, maybe I missed something obvious, has anyone encountered the same type of issue?
Thank you very much in advance!
Joti
Related
I'm trying to plot the confusion matrix for the predictions on my test set using my neural network model, but this error keeps on popping out
I'm trying to plot the confusion matrix for the predictions on my test set using my neural network model, but this error keeps on popping out. Can you please help me out. I tried to clicked the search on stackoverflow, but I didn't get a definitive answer. Can someone please help me out to resolve this error and pinpoint what error I have made? Also, if possible, what suggestions can you give? Thank you so much. Here is the picture of my code and this is my actual work This is the code: cm_plot_labels=['adobong baboy', 'arroz caldo','bagnet','balut','bicol express','biko' ,'binignit','bulalo','caldereta','camaro rebusado','champorado', 'chicharon','chicken inasal','cooked white rice','fish kinilaw','halo halo','liempo','maja blanca','pancit habhab', 'pandesal', 'pastillas de leche','pichi pichi', 'puto bumbong','puto rice cake','rellenong alimango','sinugno','sisig','suman','tapa','tinola','tuna panga','turon','ube halaya' ] plot_confusion_matrix(cm=cm, classes=cm_plot_labels, title='Confusion Matrix')
As the error states, 'plt.cm.Blues' is not a valid value for the cmap argument of the plt.imshow function. The error suggests possible valid values that can be passed as the cmap value. So, to solve your error you should be able to just set the default value of cmap in the plot_confusion_matrix function parameters to the string value 'Blues' instead of 'plt.cm.Blues'. Here is the documentation for the plt.imshow function which you are using. Here it gives details of what the parameters are (including cmap) and what valid values can be passed to them. https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.imshow.html
What does this ejabberd / erlang stack trace mean?
could someone help me figure out what to look for in this stacktrace? I've never touched Erlang, so I don't really know where to start.
We're using v19.09 of ejabberd, and getting this error log for many users:
2020-03-14 15:29:31.096 [error] <0.2029.48>#mod_http_api:handle:257 REST API Error: set_presence([{<<"user">>,<<"53265363">>},{<<"host">>,<<"chat.us.com">>},{<<"resource">>,<<"ssid-3465">>},{<<"type">>,<<"available">>},{<<"show">>,<<"chat">>},{<<"status">>,<<"{\"current_lobby_id\":\"none\",\"status\":\"{\\r\
\\t\\\"rich_presence\\\": \\\"{\\\\r\\\
\\\\t\\\\\\\"rich_presence\\\\\\\": \\\\\\\"?s=PlayerStatusInMap?p0=21?p1=2?p2=3\\\\\\\",\\\\r\\\
\\\\t\\\\\\\"session_id\\\\\\\": \\\\\\\"ssid-3465-38a44f60-9df7-4c79-8c8e-1cc99e5039dd\\\\\\\"\\\\r\\\
}\\\",\\r\
\\t\\\"current_lobby_id\\\": \\\"{\\\\r\\\
\\\\t\\\\\\\"lobby_id\\\\\\\": \\\\\\\"c791cfaa-9fd3-4d0d-9d5c-1aeb9efb12e2#hangouts.chat.us.com\\\\\\\",\\\\r\\\
\\\\t\\\\\\\"privacy\\\\\\\": \\\\\\\"friends_only\\\\\\\"\\\\r\\\
}\\\"\\r\
}\",\"region\":\"\"}">>},{<<"priority">>,<<"0">>}]) -> exit:{noproc,{p1_server,call,[none,{set_presence,{presence,<<>>,available,<<>>,{jid,<<"953265363">>,<<"chat.us.com">>,<<"oak/ssid-3465-1cc99e5039dd">>,<<"1953265363">>,<<"chat.us.com">>,<<"4c79-8c8e-1cc99e5039dd">>},{jid,<<"1953265363">>,<<"chat.us.com">>,<<>>,<<"1953265363">>,<<"chat.us.com">>,<<>>},chat,[{text,<<"en">>,<<"{\"current_lobby_id\":\"none\",\"status\":\"{\\r\
\\t\\\"rich_presence\\\": \\\"{\\\\r\\\
\\\\t\\\\\\\"rich_presence\\\\\\\": \\\\\\\"?s=PlayerStatusInMap?p0=21?p1=2?p2=3\\\\\\\",\\\\r\\\
\\\\t\\\\\\\"session_id\\\\\\\": \\\\\\\"ssid-348c8e-1cc99e5039dd\\\\\\\"\\\\r\\\
}\\\",\\r\
\\t\\\"current_lobby_id\\\": \\\"{\\\\r\\\
\\\\t\\\\\\\"lobby_id\\\\\\\": \\\\\\\"c791cfaa-9fd3-4d0d-9d5c-1aeb9efb12e2#hangouts.chat.us.com\\\\\\\",\\\\r\\\
\\\\t\\\\\\\"privacy\\\\\\\": \\\\\\\"friends_only\\\\\\\"\\\\r\\\
}\\\"\\r\
}\",\"region\":\"\"}">>}],0,[],#{}}},1000]}} [{p1_server,call,3,[{file,"src/p1_server.erl"},{line,210}]},{mod_http_api,handle2,4,[{file,"src/mod_http_api.erl"},{line,267}]},{mod_http_api,handle,4,[{file,"src/mod_http_api.erl"},{line,228}]},{mod_http_api,perform_call,4,[{file,"src/mod_http_api.erl"},{line,188}]},{mod_http_api,process,2,[{file,"src/mod_http_api.erl"},{line,141}]},{ejabberd_http,process,2,[{file,"src/ejabberd_http.erl"},{line,366}]},{ejabberd_http,process_request,1,[{file,"src/ejabberd_http.erl"},{line,488}]},{ejabberd_http,process_header,2,[{file,"src/ejabberd_http.erl"},{line,286}]}]
Start with the actual error, which is buried in the middle:
exit:{noproc,{p1_server,call,[none,{set_presence,.....
So there is a noproc error, which occurred during a call to p1_server:call, where the first argument is none. (The call would look like p1_server:call(none, {set_presence,...}).) That is, we're asking the process called none to execute the command set_presence, which fails because there is no process registered with the name none.
Now let's look at the stack trace. I added line breaks:
[{p1_server,call,3,[{file,"src/p1_server.erl"},{line,210}]},
{mod_http_api,handle2,4,[{file,"src/mod_http_api.erl"},{line,267}]},
{mod_http_api,handle,4,[{file,"src/mod_http_api.erl"},{line,228}]},
{mod_http_api,perform_call,4,[{file,"src/mod_http_api.erl"},{line,188}]},
{mod_http_api,process,2,[{file,"src/mod_http_api.erl"},{line,141}]},
{ejabberd_http,process,2,[{file,"src/ejabberd_http.erl"},{line,366}]},
{ejabberd_http,process_request,1,[{file,"src/ejabberd_http.erl"},{line,488}]},
{ejabberd_http,process_header,2,[{file,"src/ejabberd_http.erl"},{line,286}]}]
The first line is where it discovers that there is no such process, on line 210 in p1_server.erl. But we're more interested in why we're passing none as the argument in the first place. The stack trace suggests that's happening somewhere in mod_http_api.erl, but at that point I'm getting lost - it seems like it's extracting the arguments from the command, but I don't understand where the none is coming from...
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allprojects {
sonarqube {
properties {
// property "sonar.log.level", "INFO"
property "sonar.log.level", "TRACE"
}
}
}
see the analysis parameters.
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