I2C devices on docker container - docker

I am running a docker container on Raspberry Pi 3 and I am trying to read from an I2C device from the container. When I use i2cdetect inside docker I can see the devices. The run option I use is sudo docker run --device /dev/i2c-1 --name <name> <image>, but when I try to read from the I2C device all CRC checks fail as if the file /dev/i2c-1 didn't mount correctly. It looks like the directory has just been copied on run and did not bind. Has anyone else experienced this?
I have also tried the --privileged option and binding the folder -v -v /dev:/dev.
I can't use i2cget to test the device because it uses 16bit addressing
I use the wiringPi library for C https://github.com/WiringPi/WiringPi.
On run I get these messages:
backup:x:34:34:backup:/var/backups:/usr/sbin/nologin
list:x:38:38:Mailing List Manager:/var/list:/usr/sbin/nologin
irc:x:39:39:ircd:/var/run/ircd:/usr/sbin/nologin
gnats:x:41:41:Gnats Bug-Reporting System (admin):/var/lib/gnats:/usr/sbin/nologin
nobody:x:65534:65534:nobody:/nonexistent:/usr/sbin/nologin
systemd-timesync:x:100:103:systemd Time Synchronization,,,:/run/systemd:/bin/false
systemd-network:x:101:104:systemd Network Management,,,:/run/systemd/netif:/bin/false
systemd-resolve:x:102:105:systemd Resolver,,,:/run/systemd/resolve:/bin/false
systemd-bus-proxy:x:103:106:systemd Bus Proxy,,,:/run/systemd:/bin/false
_apt:x:104:65534::/nonexistent:/bin/false
Output from i2cdetect -y 1 in docker:
0 1 2 3 4 5 6 7 8 9 a b c d e f
00: -- -- -- -- -- -- -- -- -- -- -- -- --
10: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
20: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
30: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
40: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
50: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
60: -- -- -- -- -- -- -- -- 68 -- -- -- -- -- -- --
70: 70 -- -- -- -- -- -- --

Related

Linux function i2c ds1307_probe not called

I am using Linux-4.9.67 with an ARM device with a ds1307 compatible RTC controller on the i2c bus. Added in Kernel config
CONFIG_RTC_DRV_DS1307=y
Added the node in the device tree
&i2c4 {
clock-frequency = <100000>;
pinctrl-names = "default";
pinctrl-0 = <&pinctrl_i2c4>;
status = "okay";
ds1307: rtc#68 {
compatible = "dallas,ds1307";
reg = <0x68>;
};
};
I see it in the device list
root#csb:~# i2cdetect -y 3
0 1 2 3 4 5 6 7 8 9 a b c d e f
00: -- -- -- -- -- -- -- -- -- -- -- -- --
10: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
20: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
30: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
40: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
50: -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --
60: -- -- -- -- -- -- -- -- 68 -- -- -- -- -- -- --
70: -- -- -- -- -- -- -- --
However the problem is that the device driver is not loaded and the ds1307_probe() is never called.
Any idea about that's missing?
Thanks
Everything in the question was OK.
The problem was caused by hardware issue.

cmake .. -G "Visual Studio 16 2019" && msbuild /m expat.sln - failed

I'm trying to build expat library for 64-bit using VS 2019, for integrating with log4cxx. Downloaded the expat from here. Steps mentioned here are only linux. I tried to follow the steps mentioned in the package. But cmake is failing. There is no pre-built library for 64-bit. Below is the output of cmake
c:\> cmake .. -G "Visual Studio 16 2019" && msbuild /m expat.sln
-- Selecting Windows SDK version 10.0.18362.0 to target Windows 10.0.16299.
-- The C compiler identification is MSVC 19.24.28316.0
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio/2019/Enterprise/VC/Tools/MSVC/14.24.28314/bin/Hostx64/x64/cl.exe
-- Check for working C compiler: C:/Program Files (x86)/Microsoft Visual Studio/2019/Enterprise/VC/Tools/MSVC/14.24.28314/bin/Hostx64/x64/cl.exe -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for dlfcn.h
-- Looking for dlfcn.h - not found
-- Looking for fcntl.h
-- Looking for fcntl.h - found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for memory.h
-- Looking for memory.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for strings.h
-- Looking for strings.h - not found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - not found
-- Looking for getpagesize
-- Looking for getpagesize - not found
-- Looking for mmap
-- Looking for mmap - not found
-- Looking for getrandom
-- Looking for getrandom - not found
-- Looking for arc4random_buf
-- Looking for arc4random_buf - not found
-- Looking for arc4random
-- Looking for arc4random - not found
-- Looking for 4 include files stdlib.h, ..., float.h
-- Looking for 4 include files stdlib.h, ..., float.h - found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for off_t
-- Looking for off_t - not found
-- Looking for size_t
-- Looking for size_t - not found
-- Performing Test HAVE_SYSCALL_GETRANDOM
-- Performing Test HAVE_SYSCALL_GETRANDOM - Failed
-- Performing Test FLAG_NO_STRICT_ALIASING
-- Performing Test FLAG_NO_STRICT_ALIASING - Failed
-- Performing Test FLAG_VISIBILITY
-- Performing Test FLAG_VISIBILITY - Failed
-- The CXX compiler identification is MSVC 19.24.28316.0
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio/2019/Enterprise/VC/Tools/MSVC/14.24.28314/bin/Hostx64/x64/cl.exe
-- Check for working CXX compiler: C:/Program Files (x86)/Microsoft Visual Studio/2019/Enterprise/VC/Tools/MSVC/14.24.28314/bin/Hostx64/x64/cl.exe -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error: File C:/Program Files (x86)/Expat 2.2.9/Source/Changes does not exist.
CMake Error at CMakeLists.txt:478 (configure_file):
configure_file Problem configuring file
-- ===========================================================================
-- Configuration
-- Prefix ..................... C:/Program Files (x86)/expat
-- Build type .................
-- Shared libraries ........... ON
-- Static CRT ................. OFF
-- Character type ............. char (UTF-8)
-- Binary postfix .............
-- Build documentation ........ OFF
-- Build examples ............. ON
-- Build fuzzers .............. OFF
-- Build tests ................ ON
-- Build tools (xmlwf) ........ ON
-- Install files .............. ON
-- Features
-- // Advanced options, changes not advised
-- Attributes info .......... OFF
-- Context bytes ............ 1024
-- DTD support .............. ON
-- Large size ............... OFF
-- Minimum size ............. OFF
-- Namespace support ........ ON
-- Entropy sources
-- rand_s ................... ON
-- ===========================================================================
-- Configuring incomplete, errors occurred!
See also "C:/Program Files (x86)/Expat 2.2.9/Source/build/CMakeFiles/CMakeOutput.log".
See also "C:/Program Files (x86)/Expat 2.2.9/Source/build/CMakeFiles/CMakeError.log".
Looking for suggestion/help in fixing the issue.
Regards,
Vishu
This is issue #409 upstream. It is fixed in libexpat >=2.2.10.

fbthrift: No generator named 'cpp2' could be found after (seemingly) successful build

I'm trying to install crnn which requires fblualib on Ubuntu 18.04 LTS. While building TH++, an error occured (Complete build print attached below):
[ 10%] Building CXX object CMakeFiles/thpp.dir/Storage.cpp.o
In file included from /home/huiji/Downloads/thpp-master/thpp/Storage.cpp:11:0:
/home/huiji/Downloads/thpp-master/thpp/../thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include **<thpp/if/gen-cpp2/Tensor_types.h>**
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
If I build thpp without using fbthrift and folly by running THPP_NOFB=1 ./build.sh in the thpp directory, the build would be successful (I have thpp files in torch/install/include and torch/install/lib). However, if I move on and build fblualib, an almost identical error occurs:
[ 20%] Building CXX object CMakeFiles/fblualib.dir/LuaUtils.cpp.o
In file included from
/home/huiji/torch/install/include/thpp/Tensor.h:20:0,
from /home/huiji/Downloads/fblualib-master/fblualib/../fblualib/LuaUtils.h:19,
from /home/huiji/Downloads/fblualib- master/fblualib/LuaUtils.cpp:11:
/home/huiji/torch/install/include/thpp/Storage.h:22:10: fatal error:
thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
I figure that there may be something wrong with my fbthrift. Then I tried the following commands under directory "thpp/if/". It seems that my fbthrift can't generate a cpp2-format file, but can generate a cpp/py file, awhile my python thrift_compiler can only generate an errored cpp2-format file.
$ thrift --gen cpp2 Tensor.thrift
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:1] No generator named 'cpp2' could be found!
[WARNING:generation:1] Unable to get a generator for "cpp2".
# Nothing was generated in /thpp/if
$ thrift --gen cpp Tensor.thrift && ls gen-cpp
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:3] No generator named 'cpp2' could be found!
Tensor_constants.cpp Tensor_constants.h Tensor_types.cpp Tensor_types.h
$ thrift --gen py Tensor.thrift && ls -R gen-py
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:3] No generator named 'cpp2' could be found!
gen-py:
__init__.py Tensor
gen-py/Tensor:
constants.py __init__.py ttypes.py
$ python -m thrift_compiler.main --gen cpp2 Tensor.thrift && ls gen-cpp2
Tensor_fatal_all.h Tensor_fatal.h Tensor_fatal_types.h
Tensor_fatal_constant.h Tensor_fatal_service.h Tensor_fatal_union.h
Tensor_fatal_enum.h Tensor_fatal_struct.h
# A "gen-cpp2" directory was created, but in it there was no "Tensor_types.h"!
$ python -m thrift_compiler.main --gen cpp Tensor.thrift
('Argument Error:', ArgumentError('Language cpp not defined.',))
$ python -m thrift_compiler.main --gen py Tensor.thrift
('Argument Error:', ArgumentError('Language py not defined.',))
By the way, my fbthrift install seemed successful except the python package thrift_compiler was not installed correctly. I've followed GitHubGS's suggestion. That seem to have worked (I can now import thrift_compiler in python, below is what I did) but as you can see, it is not really working.
1.modify /thrift/compiler/CMakefile.txt by inserting these lines
set(CMAKE_CXX_FLAGS "-fPIC")
set(CMAKE_C_FLAGS "-fPIC")
2.rebuild/reinstall fbthrift(must step)
3.run your command under /fbthrift/thrift/compiler/py
g++ -I /usr/include/python2.7 -I ../../.. -std=c++14 -fpic -shared -o frontend.so compiler.cc -lboost_python -lpython2.7 -L/build/lib -lcompiler_base -lcompiler_ast -lboost_system -lboost_filesystem -lssl -lcrypto
sudo cp frontend.so /usr/local/lib/python2.7/dist-packages/thrift_py-0.9.0-py2.7.egg/thrift_compiler
Any ideas/suggestions would be greatly appreciated.
=================
Complete message of thpp build:
huiji#NoBoDy:~/Downloads/thpp-master/thpp$ ./build.sh
If you don&apos;t have folly or thrift installed, try doing
THPP_NOFB=1 ./build.sh
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/local/bin/gcc
-- Check for working C compiler: /usr/local/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/g++
-- Check for working CXX compiler: /usr/local/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Torch7 in /home/huiji/torch/install
-- Found Folly: /usr/local/include
-- Found Thrift: /usr/local/include
-- Performing Test HAS_NO_AS_NEEDED
-- Performing Test HAS_NO_AS_NEEDED - Success
-- Found Glog: /usr/include
-- Found PythonInterp: /usr/bin/python (found version "2.7.15")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/huiji/Downloads/thpp-master/thpp/build
[ 5%] Generating thpp/if/gen-cpp2/Tensor_data.h, thpp/if/gen-cpp2/Tensor_types.h, thpp/if/gen-cpp2/Tensor_types.tcc, thpp/if/gen-cpp2/Tensor_constants.h, thpp/if/gen-cpp2/Tensor_data.cpp, thpp/if/gen-cpp2/Tensor_types.cpp, thpp/if/gen-cpp2/Tensor_constants.cpp
Scanning dependencies of target thpp
[ 10%] Building CXX object CMakeFiles/thpp.dir/Storage.cpp.o
In file included from /home/huiji/Downloads/thpp-master/thpp/Storage.cpp:11:0:
/home/huiji/Downloads/thpp-master/thpp/../thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/thpp.dir/build.make:84: recipe for target &apos;CMakeFiles/thpp.dir/Storage.cpp.o&apos; failed
make[2]: *** [CMakeFiles/thpp.dir/Storage.cpp.o] Error 1
CMakeFiles/Makefile2:67: recipe for target &apos;CMakeFiles/thpp.dir/all&apos; failed
make[1]: *** [CMakeFiles/thpp.dir/all] Error 2
Makefile:140: recipe for target &apos;all&apos; failed
make: *** [all] Error 2
Complete message of fblualib build:
huiji#NoBoDy:~/Downloads/fblualib-master/fblualib$ ./build.sh
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/local/bin/gcc
-- Check for working C compiler: /usr/local/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/g++
-- Check for working CXX compiler: /usr/local/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Folly: /usr/local/include
-- Found Glog: /usr/include
-- Found Torch7 in /home/huiji/torch/install
-- Found Folly: /home/huiji/torch/install/include
-- Configuring done
WARNING: Target "fblualib" requests linking to directory "/home/huiji/torch/install/lib". Targets may link only to libraries. CMake is dropping the item.
-- Generating done
-- Build files have been written to: /home/huiji/Downloads/fblualib-master/fblualib/build
Scanning dependencies of target fblualib
[ 20%] Building CXX object CMakeFiles/fblualib.dir/LuaUtils.cpp.o
In file included from /home/huiji/torch/install/include/thpp/Tensor.h:20:0,
from /home/huiji/Downloads/fblualib-master/fblualib/../fblualib/LuaUtils.h:19,
from /home/huiji/Downloads/fblualib-master/fblualib/LuaUtils.cpp:11:
/home/huiji/torch/install/include/thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/fblualib.dir/build.make:62: recipe for target &apos;CMakeFiles/fblualib.dir/LuaUtils.cpp.o&apos; failed
make[2]: *** [CMakeFiles/fblualib.dir/LuaUtils.cpp.o] Error 1
CMakeFiles/Makefile2:67: recipe for target &apos;CMakeFiles/fblualib.dir/all&apos; failed
make[1]: *** [CMakeFiles/fblualib.dir/all] Error 2
Makefile:129: recipe for target &apos;all&apos; failed
make: *** [all] Error 2
Use thrift1 and mstch_cpp2 instead. It works for me!
See https://github.com/facebook/fbthrift/issues/271 and $THRIFT_INCLUDE is /usr/local/include/thrift/ in my system.
As one of the above answer mentioned, after building fbthrift successfully, you get bin/thrift1 binary in your build folder. You can then use the output thrift1 with generator mstch_cpp2.
./build/bin/thrift1 --gen mstch_cpp2 --templates ./thrift/compiler/generate/templates --out /tmp/ ./thrift/example/if/chatroom.thrift
Ref https://github.com/facebook/fbthrift/issues/303

Error in installing caffe in Ubuntu 14.04 LTS

Having already required dependencies for caffe installation:
in cmake step, when I use:
cmake ..
I get this error:
-- Python:
-- Interpreter : /home/majid/anaconda/bin/python2.7 (ver..2.7.9)
-- Libraries : /usr/lib/x86_64-linux-gnu/libpython2.7.so (ver 2.7.6)
-- NumPy : /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include (ver 1.9.2)
which in Libraries it has detected wrong path instead of /home/majid/anaconda/lib/libpython2.7.so
I tried to force to use the correct path by:
cmake -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so ..
but after:
make all -j $(nproc)
I am getting a couple of time this warning:
At end of source: warning: routine is both "inline" and "noinline"
in the end it stops by this error:
/usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.8: undefined reference to `TIFFReadRGBAStrip#LIBTIFF_4.0'
collect2: error: ld returned 1 exit status
make[2]: *** [examples/cpp_classification/classification] Error 1
make[1]: *** [examples/CMakeFiles/classification.dir/all] Error 2
make: *** [all] Error 2
while when installing opencv I used this cmake:
cmake -D CMAKE_BUILD_TYPE=RELEASE -D CMAKE_INSTALL_PREFIX=/home/majid/opencv -D PYTHON_EXECUTABLE=/home/majid/anaconda/bin/python2.7 -D PYTHON_INCLUDE_DIR=/home/majid/anaconda/include/python2.7 -D PYTHON_INCLUDE_DIRS=/home/majid/anaconda/include/python2.7 -D PYTHON_INCLUDE_DIR2=/home/majid/anaconda/include/python2.7 -D PYTHON_LIBRARIES=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_PACKAGES_PATH=/home/majid/anaconda/lib/python2.7/site-packages -D BUILD_EXAMPLES=ON -D BUILD_NEW_PYTHON_SUPPORT=ON -D PYTHON2_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_NUMPY_INCLUDE_DIRS=/home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy -D BUILD_opencv_python3=OFF -D BUILD_opencv_python2=ON -D INSTALL_C_EXAMPLES=ON -D INSTALL_PYTHON_EXAMPLES=ON -D WITH_TBB=ON -D WITH_V4L=ON -D BUILD-TIFF=ON -D WITH_OPENGL=ON -D WITH_CUBLAS=ON -D WITH_GTK=ON -D MATLAB_INCLUDE_DIRS=/home/majid/MATLAB/extern/include -D MATLAB_LIBRARY_DIRS=/home/majid/MATLAB/bin -D MATLAB_MEX_SCRIPT=/home/majid/MATLAB/bin -D MATLAB_ROOT_DIR=/home/majid/MATLAB ..
in which it is: LIBTIFF=ON.
after making opencv I set the packages' path by:
export LD_LIBRARY_PATH=/home/majid/opencv/lib
PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/home/majid/opencv/lib/pkgconfig
export PKG_CONFIG_PATH
and also:
sudo /bin/bash -c 'echo "/home/majid/opencv/lib" > /etc/ld.so.conf.d/opencv.conf'
sudo ldconfig
I don't know why I am having this problem from x86-64-linux-gnu while I have the same libopencv-highgui.so in the /home/majid/opencv/lib
I really appreciate it if someone could help me out in this matter.
the result of forced cmake:
cmake -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so ..
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- system
-- thread
-- Found gflags (include: /usr/local/include, library: /usr/local/lib/libgflags.a)
-- Found glog (include: /usr/local/include, library: /usr/local/lib/libglog.so)
-- Found PROTOBUF Compiler: /usr/local/bin/protoc
-- Found lmdb (include: /usr/local/include, library: /usr/local/lib/liblmdb.so)
-- Found LevelDB (include: /usr/local/include, library: /usr/local/lib/libleveldb.so)
-- Found Snappy (include: /usr/include, library: /usr/lib/libsnappy.so)
-- CUDA detected: 7.0
-- Found cuDNN (include: /usr/local/cuda-7.0/include, library: /usr/local/cuda-7.0/lib64/libcudnn.so)
-- Added CUDA NVCC flags for: sm_21
-- Cuda + Boost 1.55: Applying noinline work around
-- OpenCV found (/usr/share/OpenCV)
-- Found Atlas (include: /usr/include, library: /usr/lib/libatlas.so)
-- Found PythonLibs: /home/majid/anaconda/lib/libpython2.7.so (found suitable version "2.7.6", minimum required is "2.7")
-- NumPy ver. 1.9.2 found (include: /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include)
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- python
-- Detected Doxygen OUTPUT_DIRECTORY: ./doxygen/
--
-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : <TODO> (Caffe doesn't declare its version in headers)
-- Git : rc2-344-g7e5608f-dirty
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compared-Wno-uninitialized
-- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Build type : Release
--
-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : OFF
-- BUILD_docs : ON
-- CPU_ONLY : OFF
--
-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.55)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 3.0.0)
-- lmdb : Yes (ver. 0.9.14)
-- Snappy : Yes (ver. 1.1.0)
-- LevelDB : Yes (ver. 1.17)
-- OpenCV : Yes (ver. 2.4.8)
-- CUDA : Yes (ver. 7.0)
--
-- NVIDIA CUDA:
-- Target GPU(s) : Auto
-- GPU arch(s) : sm_21
-- cuDNN : Yes
--
-- Python:
-- Interpreter : /home/majid/anaconda/bin/python2.7 (ver. 2.7.9)
-- Libraries : /home/majid/anaconda/lib/libpython2.7.so (ver 2.7.6)
-- NumPy : /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include (ver 1.9.2)
--
-- Documentaion:
-- Doxygen : /usr/bin/doxygen (1.8.6)
-- config_file : /home/majid/caffe/.Doxyfile
--
-- Install:
-- Install path : /home/majid/caffe/build/install
--
-- Configuring done
-- Generating done
-- Build files have been written to: /home/majid/caffe/build

Compiling OpenCV Source Code for 64 bit (Mac)

I'm having some problems while trying to compile 64 bit OpenCV libraries. This is what I've done so far:
Got the source code using svn
In the opencv I have mkdir build then cd build
cmake -G "Unix Makefiles" -D CMAKE_OSX_ARCHITECTURES=x86_64 -D CMAKE_C_FLAGS=-m64 -D CMAKE_CXX_FLAGS=-m64 ..
This then leaves me with the output (below), which worries me because a number of packages are not found. I have tried disabling the WITH_CUDA flag as suggest in this post Building EmguCV on OSX Snow Leopard but it doesn't seem to help.
-- Extracting svn version, please wait...
-- SVNVERSION: svn:9029
-- checking for module 'libdc1394-2'
-- package 'libdc1394-2' not found
-- checking for module 'libdc1394'
-- package 'libdc1394' not found
-- checking for module 'libavcodec'
-- package 'libavcodec' not found
-- checking for module 'libavformat'
-- package 'libavformat' not found
-- checking for module 'libavutil'
-- package 'libavutil' not found
-- checking for module 'libswscale'
-- package 'libswscale' not found
-- Looking for libavformat/avformat.h
-- Looking for libavformat/avformat.h - not found
-- Looking for ffmpeg/avformat.h
-- Looking for ffmpeg/avformat.h - not found
Traceback (most recent call last):
File "<string>", line 1, in <module>
ImportError: No module named sphinx
--
-- General configuration for OpenCV 2.4.9 =====================================
-- Version control: svn:9029
--
-- Platform:
-- Host: Darwin 11.4.0 i386
-- CMake: 2.8.8
-- CMake generator: Unix Makefiles
-- CMake build tool: /usr/bin/make
-- Configuration: Release
--
-- C/C++:
-- Built as dynamic libs?: YES
-- C++ Compiler: /usr/bin/c++
-- C++ flags (Release): -m64 -O3 -DNDEBUG
-- C++ flags (Debug): -m64 -g
-- C Compiler: /usr/bin/gcc
-- C flags (Release): -m64 -O3 -DNDEBUG
-- C flags (Debug): -m64 -g
-- Linker flags (Release):
-- Linker flags (Debug):
-- Precompiled headers: NO
--
-- OpenCV modules:
-- To be built: core imgproc flann highgui features2d calib3d ml video objdetect contrib nonfree legacy gpu photo python stitching ts videostab
-- Disabled: world
-- Disabled by dependency: -
-- Unavailable: androidcamera java
--
-- GUI:
-- QT 4.x: NO
-- Cocoa: YES
-- OpenGL support: NO
--
-- Media I/O:
-- ZLib: build (ver 1.2.6)
-- JPEG: build (ver 62)
-- PNG: build (ver 1.5.9)
-- TIFF: build (ver 42 - 4.0.1)
-- JPEG 2000: build (ver 1.900.1)
-- OpenEXR: NO
--
-- Video I/O:
-- DC1394 1.x: NO
-- DC1394 2.x: NO
-- FFMPEG: NO
-- codec: NO
-- format: NO
-- util: NO
-- swscale: NO
-- gentoo-style: NO
-- OpenNI: NO
-- OpenNI PrimeSensor Modules: NO
-- PvAPI: NO
-- QuickTime: NO
-- QTKit: YES
--
-- Other third-party libraries:
-- Use IPP: NO
-- Use TBB: NO
-- Use Cuda: NO
-- Use Eigen: NO
-- Use Clp: NO
--
-- Python:
-- Interpreter: /usr/bin/python (ver 2.7.1)
-- Libraries: /usr/lib/libpython2.7.dylib (ver 2.7.1)
-- numpy: /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include (ver 1.5.1)
-- packages path: lib/python2.7/site-packages
--
-- Documentation:
-- Build Documentation: NO
-- Sphinx: NO
-- PdfLaTeX compiler: /usr/texbin/pdflatex
--
-- Tests and samples:
-- Tests: YES
-- Performance tests: YES
-- Examples: NO
--
-- Install path: /usr/local
--
-- cvconfig.h is in: /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build
-- -----------------------------------------------------------------
--
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build
If I then try make -j8 I get something that starts off like this and goes on fo a while:
[ 0%] [ 0%] [ 0%] [ 1%] [ 1%] [ 1%] Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/adler32.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/compress.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/crc32.c.o
Building C object 3rdparty/libpng/CMakeFiles/libpng.dir/pngerror.c.o
Building C object 3rdparty/libpng/CMakeFiles/libpng.dir/png.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/deflate.c.o
[ 1%] [ 1%] Building C object 3rdparty/libjasper/CMakeFiles/libjasper.dir/jas_cm.c.o
Building C object 3rdparty/libjpeg/CMakeFiles/libjpeg.dir/jcapimin.c.o
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngerror.c:19:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:45:20: error: stdlib.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:127,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngerror.c:19:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:442:26: error: setjmp.h: No such file or directory
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:450:24: error: time.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.c:14:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:45:20: error: stdlib.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:127,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.c:14:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:442:26: error: setjmp.h: No such file or directory
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:450:24: error: time.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/zlib/zlib.h:34,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/zlib/compress.c:9:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build/3rdparty/zlib/zconf.h:403:48: error: sys/types.h: No such file or directory
INSTRUCTIONS
Download the zip from https://github.com/Itseez/opencv
When you unzip it you should be left with a folder called 'opencv-master', cd into it.
mkdir build
cmake -D CMAKE_BUILD_TYPE=RELEASE -D CMAKE_INSTALL_PREFIX=/usr/local -D BUILD_PYTHON_SUPPORT=ON ..
make
sudo make install

Resources