My binary image has lots of noise (small white blobs about 3-6 pixels in area). Can the function skimage.morphology.remove_small_objects() be used to remove these small blobs?
In my experimentation, the function leaves the image unchanged. Am I using the function incorrectly or is the function not suited to what I want to achieve?
src = cv2.imread('plan4.png')
src = cv2.GaussianBlur(src, (3,3), 1)
edges = get_edges(src.copy())
noise_reduced = morphology.remove_small_objects(edges .copy(), 2,)
cv2.imshow('src', src)
cv2.imshow('noise_reduced', noise_reduced)
cv2.imshow('edges ', edges )
Below is the original with small white blobs (that I want to remove) and the result of remove_small_objects() notice they are the same and no blobs are removed. *Note: morphological closing or opening the image would remove these small blobs but it also degrades my lines too much. I really prefer finding blobs whose area is ~6 pixels and deleting those.
When you pass in an integer image, scikit-image assumes that all the same-valued pixels belong to the same object, even if they are not connected. So, in your case, all the pixels are considered part of the same (big) object, so none are removed. Instead, you should do use
from skimage.measure import label
noise_reduced = morphology.remove_small_objects(label(edges), 2,)
Hope this helps!
Related
I am using an object detection machine learning model (only 1 object). It working well in case there are a few objects in image. But, if my image has more than 300 objects, it can't recognize anything. So, I want to divide it into two parts or four parts without crossing any object.
I used threshold otsu and get this threshold otsu image. Actually I want to divide my image by this line expect image. I think my model will work well if make predictions in each part of image.
I tried to use findContour, and find contourArea bigger than a half image area, draw it into new image, get remain part and draw into another image. But most of contour area can't reach 1/10 image area. It is not a good solution.
I thought about how to detect a line touch two boundaries (top and bottom), how can I do it?
Any suggestion is appreciate. Thanks so much.
Since your region of interests are separated already, you can use connectedComponents to get the bounding boxes of these regions. My approach is below.
img = cv2.imread('circles.png',0)
img = img[20:,20:] # remove the connecting lines on the top and the left sides
_, img = cv2.threshold(img,0,1,cv2.THRESH_BINARY)
labels,stats= cv2.connectedComponentsWithStats(img,connectivity=8)[1:3]
plt.imshow(labels,'tab10')
plt.show()
As you can see, two regions of interests have different labels. All we need to do is to get the bounding boxes of these regions. But first, we have to get the indices of the regions. For this, we can use the size of the areas, because after the background (blue), they have the largest areas.
areas = stats[1:,cv2.CC_STAT_AREA] # the first index is always for the background, we do not need that, so remove the background index
roi_indices = np.flip(np.argsort(areas))[0:2] # this will give you the indices of two largest labels in the image, which are your ROIs
# Coordinates of bounding boxes
left = stats[1:,cv2.CC_STAT_LEFT]
top = stats[1:,cv2.CC_STAT_TOP]
width = stats[1:,cv2.CC_STAT_WIDTH]
height = stats[1:,cv2.CC_STAT_HEIGHT]
for i in range(2):
roi_ind = roi_indices[i]
roi = labels==roi_ind+1
roi_top = top[roi_ind]
roi_bottom = roi_top+height[roi_ind]
roi_left = left[roi_ind]
roi_right = roi_left+width[roi_ind]
roi = roi[roi_top:roi_bottom,roi_left:roi_right]
plt.imshow(roi,'gray')
plt.show()
For your information, my method is only valid for 2 regions. In order to split into 4 regions, you would need some other approach.
Example Image
I want to remove the lines (shown in RED color) as they are out of order. Lines shown in black color are repeating at same period (approximately). Period is not known beforehand. Is there any way of deleting non-periodic lines( shown in red color) automatically?
NOTE: Image is binary ( back & while).. lines shown in red color only for illustration.
Of course there is any way. There is almost always some way to do something.
Infortunately you have not provided any particular problem. The entire thing is too broad to be answered here.
To help you getting started: (I highly recommend you start with pen, paper and your brain)
Detect the lines -> google or think, there are many standard ways to detect lines in an image. if you don't have noise in your binary image its trivial.
find any aequidistant sets -> think
delete the rest -> think ( you know what is good so everything else has to go away)
I assume, your lines are (almost) vertical.
The following should work
turn the image to a column sum histogram
try a Fourier transformation on the signal (potentially padding the image appropriately)
pick the maximum/peak from the Fourier spectrum as your base period
If you need the lines rather than the position of the lines, generate a mask with lines at appropriate intervals (as determined by your analysis before) and apply to the image.
I am currently working on an algorithm to detect the playing area of a pool table. For this purpose, I captured an image, transformed it to grayscale, and used a Sobel operator on it. Now I want to detect the playing area as a box with 4 corners located in the 4 corners of the table.
Detecting the edges of the table is quite straightforward, however, it turns out that detecting the 4 corners is not so easy, as there are pockets in the pool table. Now I just want to fit a line to each of the side edges, and from those lines, I can compute the intersects, which are the corners for my table.
I am stuck here, because I could not yet come up with a good solution to find these lines in my image. I can see it very easily when I used the Sobel operator. But what would be a good way of detecting it and computing the position of the corners?
EDIT: I added some sample Images
Basic Image:
Grayscale Image
Sobel Filter (horizontal only)
For a general solution, there will be many sources of noise: problems with cloth around the rails, wood texture (or no texture) on the rails, varying lighting, shadows, stains on the cloth, chalk on the rails, and so on.
When color and lighting aren't dependable, and when you want to find the edges of geometric objects, then it's best to think in terms of edge pixels rather than gray/color pixels.
A while back I was thinking of making a phone-based app to save ball positions for later review, including online, so I've though a bit about this problem. Although I can provide some guidance for your current question, it occurs to me you'll run into new problems each step of the way, so I'll try to provide a more complete answer.
Convert the image to grayscale. If we can't get an algorithm to work in grayscale, we'll inevitably run into problems with color. (See below)
[TBD] Do some preprocessing to reduce noise.
Find edge points using Sobel or (if you must) Canny.
Run Hough lines detection, but with a few caveats and parameterizations as described below.
Find the lines described a keystone-shaped quadrilateral. (This will likely be the inner quadrilateral of two: one inside the rail on the bed, and the other slightly larger quadrilateral at the cloth/wood rail edge at top.)
(Optional) Use the side pockets to help determine the orientation of the quadrilateral.
Use an affine transform to map the perspective-distorted table bed to a rectangle of [thankfully] known relative dimensions. We know the bed sizes in advance, so you can remap the distorted rectangle to a proper rectangle. (We'll ignore some optical effects for now.)
Remap the color image to the perspective-corrected rectangle. You'll probably need to tweak the positions of some balls.
General notes:
Filtering by color in the general sense can be difficult. It's tempting to think of the cloth as being simply green, blue, or red (or some other color), but when you look at the actual RGB values and try to separate colors you'll begin to appreciate what a nightmare working in color can be.
Optical distortion might throw off some edges.
The far short rail may be difficult to detect, BUT you do this: find the inside lines for the two long rails, then search vertically between the two rails for the first strong horizontal-ish edge at the far side of the image. That'll be the far short rail.
Although you probably want to use your phone camera for convenience, using a Kinect camera or similar (preferably smaller) device would make the problem easier. Not only would you have both color data and 3D data, but you would eliminate some problems with lighting since the depth data wouldn't depend on visible lighting.
For your app, consider limiting the search region for rail edges to a perspective-distorted rectangle. The user might be able to adjust the search region. This could greatly simplify the processing, and could help you work around problems if the table isn't lit well (as can be the case).
If color segmentation (as suggested by #Dima) works, get the outline of the blob using contour following. Then simplify the outline to a quadrilateral (or a polygon of few sides) by the Douglas-Peucker algorithm. You should find the four table edges this way.
For more accuracy, you can refine the edge location by local search of transitions across it and perform line fitting. Then intersect the lines to get the corners.
The following answer assumes you have already found the positions of the lines in the image. This however can be done "easily" by directly looking at the pixels and seeing if they are in a "line". Usually it is easier to detect this if the image has been deskewed first as well, i.e. Rotated so the rectangle (pool table) is more like this: [] than like /=/. Then it is just a case of scanning the pixels and if there are ones of similar colour alongside it assuming a line is between them.
The code works by looping over the lines found in the image. Whenever the end points of each line falls within a tolerance on within the x and y coordinates it is marked as a corner. Once the corners are found I take the average value between them to find where the corner lies. For example:
A horizontal line ending at 10, 10 and a vertical line starting at 12, 12 will be found to be a corner if there is a tolerance of 2 or more. The corner found will be at: 11, 11
NOTE: This is just to find Top Left corners but can easily be adapted to find all of them. The reason it has been done like this is because in the application where I use it, it is faster to sort each array first into an order where relevant values will be found first, see: Why is processing a sorted array faster than an unsorted array?.
Also note that my code finds the first corner for each line which might not be applicable for you, this is mainly for performance reasons. However the code can easily be adapted to find all the corners with all the lines then either select the "more likely" corner or average through them all.
Also note my answer is written in C#.
private IEnumerable<Point> FindTopLeftCorners(IEnumerable<Line> horizontalLines, IEnumerable<Line> verticalLines)
{
List<Point> TopLeftCorners = new List<Point>();
Line[] laHorizontalLines = horizontalLines.OrderBy(l => l.StartPoint.X).ThenBy(l => l.StartPoint.Y).ToArray();
Line[] laVerticalLines = verticalLines.OrderBy(l => l.StartPoint.X).ThenBy(l => l.StartPoint.Y).ToArray();
foreach (Line verticalLine in laVerticalLines)
{
foreach (Line horizontalLine in laHorizontalLines)
{
if (verticalLine.StartPoint.X <= (horizontalLine.StartPoint.X + _nCornerTolerance) && verticalLine.StartPoint.X >= (horizontalLine.StartPoint.X - _nCornerTolerance))
{
if (horizontalLine.StartPoint.Y <= (verticalLine.StartPoint.Y + _nCornerTolerance) && horizontalLine.StartPoint.Y >= (verticalLine.StartPoint.Y - _nCornerTolerance))
{
int nX = (verticalLine.StartPoint.X + horizontalLine.StartPoint.X) / 2;
int nY = (verticalLine.StartPoint.Y + horizontalLine.StartPoint.Y) / 2;
TopLeftCorners.Add(new Point(nX, nY));
break;
}
}
}
}
return TopLeftCorners;
}
Where Line is the following class:
public class Line
{
public Point StartPoint { get; private set; }
public Point EndPoint { get; private set; }
public Line(Point startPoint, Point endPoint)
{
this.StartPoint = startPoint;
this.EndPoint = endPoint;
}
}
And _nCornerTolerance is an int of a configurable amount.
A playing area of a pool table typically has a distinctive color, like green or blue. I would try a color-based segmentation approach first. The Color Thresholder app in MATLAB gives you an easy way to try different color spaces and thresholds.
I've ran in to an issue concerning generating floating point coordinates from an image.
The original problem is as follows:
the input image is handwritten text. From this I want to generate a set of points (just x,y coordinates) that make up the individual characters.
At first I used findContours in order to generate the points. Since this finds the edges of the characters it first needs to be ran through a thinning algorithm, since I'm not interested in the shape of the characters, only the lines or as in this case, points.
Input:
thinning:
So, I run my input through the thinning algorithm and all is fine, output looks good. Running findContours on this however does not work out so good, it skips a lot of stuff and I end up with something unusable.
The second idea was to generate bounding boxes (with findContours), use these bounding boxes to grab the characters from the thinning process and grab all none-white pixel indices as "points" and offset them by the bounding box position. This generates even worse output, and seems like a bad method.
Horrible code for this:
Mat temp = new Mat(edges, bb);
byte roi_buff[] = new byte[(int) (temp.total() * temp.channels())];
temp.get(0, 0, roi_buff);
int COLS = temp.cols();
List<Point> preArrayList = new ArrayList<Point>();
for(int i = 0; i < roi_buff.length; i++)
{
if(roi_buff[i] != 0)
{
Point tempP = bb.tl();
tempP.x += i%COLS;
tempP.y += i/COLS;
preArrayList.add(tempP);
}
}
Is there any alternatives or am I overlooking something?
UPDATE:
I overlooked the fact that I need the points (pixels) to be ordered. In the method above I simply do scanline approach to grabbing all the pixels. If you look at the 'o' for example, it would grab first the point on the left hand side, then the one on the right hand side. I would need them to be ordered by their neighbouring pixels since I want to draw paths with the points later on (outside of opencv).
Is this possible?
You should look into implementing your own connected components labelling. The concept is very simple: you scan the first line and assign unique labels to each horizontally connected strip of pixels. You basically check for every pixel if it is connected to its left neighbour and assign it either that neighbour's label or a new label. In the second row you do the same, but you also check against the pixels above it. Sometimes you need a label merge: two strips that were not connected in the previous row are joined in the current row. The way to deal with this is either to keep a list of label equivalences or use pointers to labels (so you can easily do a complete label change for an object).
This is basically what findContours does, but if you implement it yourself you have the freedom to go for 8-connectedness and even bridge a single-pixel or two-pixel gap. That way you get "almost-connected components labelling". It looks like you need this for the "w" in your example picture.
Once you have the image labelled this way, you can push all the pixels of a single label to a vector, and order them something like this. Find the top left pixel, push it to a new vector and erase it from the original vector. Now find the pixel in the original vector closest to it, push it to the new vector and erase from the original. Continue until all pixels have been transferred.
It will not be very fast this way, but it should be a start.
I have a bunch of uncompressed bitonal TIF document images. All of them have a watermark in the middle. When I run them through OCR, the text that overlaps with the watermark does not get recognized. I am trying to see if I can apply some type of cleanup to remove those watermarks to be able to recognize the missing text.
Again, the images are black and white, but when you look at the watermark it appears grey since it has a pattern of black and white pixels that makes the letters in the watermark less "dense" than regular text. At the same time, the watermark letters are very big, much bigger than the regular text.
An example of a somewhat similar image is this (except this one is color and the watermark characters in my case are a lot thicker and bigger; my watermarks are also a lot shorter: only 3 to 4 letters long)
It seems that there might be some sort of clean up filter that would be similar to removing large black borders from an image except borders are ually "denser" than a watermark so they appear "more black".
I have 3 tools at my disposal: GIMP, ImageMagick and IrfanView. Can you recommend any specific features of any subset of these tools that might help me?
Playing with contrast etc did not help, but I found a different way. As stated above, the regular text is a lot "denser" than the watermark text meaning that a regular black pixel has more surrounding black pixels than a watermark black pixel. So I devised a simple window-based filtering and thresholding algorithm.
Here's how I did it in Matlab, using a 5X5 window:
im=imread('imageWithWmark.tif');
imInv = ~im;
nr=size(imInv,1);
nc=size(imInv,2);
d = 2; % for 5X5 window
counts = zeros(nr,nc);
for rr = d+1 : nr-d-1
for cc = d+1 : nc-d-1
counts(rr,cc) = nnz(imInv(rr-d:rr+d,cc-d:cc+d));
end
end
thresh=10; % 10 out of 25 -- the larger the thresh the thinner the resulting letters are
imThresh = (counts>=thresh) & imInv;
imwrite(~imThresh,sprintf('Thresh_%d.tif',thresh),'Compression','none','Resolution',300);
Of course, the size of the window, the threshold and other parameters depend on the parameters of the regular text on the page (letter bigger/smaller, thicker/thinner etc) but even this initial version worked pretty well