How to quantify bias and variance given train data samples - machine-learning

I have a model that I train using polynomial and radial basis functions, I split the data into train set and test set and I take a lot of samples from the train set. Now I'm at a loss for the next step, I know bias is the loss of the sample with the least loss. Do I calculate this on train data or test data? Is the variance just the variance of the losses on the test set?

The main goal of this tradeoff is to find the right amount of complexity for the decision boundary.
High complexity: (Could) Memorizes the past and (may) not generalize for the future (High variance problem)
Low complexity: (Could) not learn enough from the past because of very simple decision boundary and again (may) fail to have a good prediction as well (high bias problem)
This could be simply shown with a figure like the following,

Related

Random Forest Train / Test meaning

I have the following:
rf = RandomForestClassifier(n_estimators=500, criterion='entropy', random_state=42)
rf.fit(X_train, y_train)
From this, I get:
1.0 accuracy on training set
0.6990116801437556 accuracy on test set
Since we're not setting the max_depth, it seems the trees are overfitting to the training data.
My question is: what does this tell us about the training data? Does the fact that it has reasonable accuracy imply that the test data is very like the training data and that's the only reason we're getting such an accuracy?
Since you don't specify the max_depth of the tree, it grows until you have all pure nodes. So it is natural to overfit and correct/expected to have 100% (or rather high if the min_number of samples for node is not too large) accuracy on the training set.
This fact in not very insightful about the training set.
The fact that you are having a "such good" accuracy on the test set could indeed point out a similarity in the distribution of training/test set (that a one point it is expected if they are drawn from the same phenomenon) and that the tree has some degree of generalizability.
As general rule I would say that it is wrong to infer conclusion from a single result and when the training set is over-fitting. Additionally considering 0.69 accuracy a "good" accuracy is relative to the problem at hand. 30% of difference between training set and test set could be a huge gap in many applications.
In order to have a better understanding of your problem and more robust results it would be better to use a cross validation approach and a random forest.

Test accuracy is greater than train accuracy what to do?

I am using the random forest.My test accuracy is 70% on the other hand train accuracy is 34% ? what to do ? How can I solve this problem.
Test accuracy should not be higher than train since the model is optimized for the latter. Ways in which this behavior might happen:
you did not use the same source dataset for test. You should do a proper train/test split in which both of them have the same underlying distribution. Most likely you provided a completely different (and more agreeable) dataset for test
an unreasonably high degree of regularization was applied. Even so there would need to be some element of "test data distribution is not the same as that of train" for the observed behavior to occur.
The other answers are correct in most cases. But I'd like to offer another perspective. There are specific training regimes that could cause the training data to be harder for the model to learn - for instance, adversarial training or adding Gaussian noise to the training examples. In these cases, the benign test accuracy could be higher than train accuracy, because benign examples are easier to evaluate. This isn't always a problem, however!
If this applies to you, and the gap between train and test accuracies is larger than you'd like (~30%, as in your question, is a pretty big gap), then this indicates that your model is underfitting to the harder patterns, so you'll need to increase the expressibility of your model. In the case of random forests, this might mean training the trees to a higher depth.
First you should check the data that is used for training. I think there is some problem with the data, the data may not be properly pre-processed.
Also, in this case, you should try more epochs. Plot the learning curve to analyze when the model is going to converge.
You should check the following:
Both training and validation accuracy scores should increase and loss should decrease.
If there is something wrong in step 1 after any particular epoch, then train your model until that epoch only, because your model is over-fitting after that.

ResNet How to achieve accuracy as in the document?

I implement the ResNet for the cifar 10 in accordance with this document https://arxiv.org/pdf/1512.03385.pdf
But my accuracy is significantly different from the accuracy obtained in the document
My - 86%
Pcs daughter - 94%
What's my mistake?
https://github.com/slavaglaps/ResNet_cifar10
Your question is a little bit too generic, my opinion is that the network is over fitting to the training data set, as you can see the training loss is quite low, but after the epoch 50 the validation loss is not improving anymore.
I didn't read the paper in deep so I don't know how did they solved the problem but increasing regularization might help. The following link will point you in the right direction http://cs231n.github.io/neural-networks-3/
below I copied the summary of the text:
Summary
To train a Neural Network:
Gradient check your implementation with a small batch of data and be aware of the pitfalls.
As a sanity check, make sure your initial loss is reasonable, and that you can achieve 100% training accuracy on a very small portion of
the data
During training, monitor the loss, the training/validation accuracy, and if you’re feeling fancier, the magnitude of updates in relation to
parameter values (it should be ~1e-3), and when dealing with ConvNets,
the first-layer weights.
The two recommended updates to use are either SGD+Nesterov Momentum or Adam.
Decay your learning rate over the period of the training. For example, halve the learning rate after a fixed number of epochs, or
whenever the validation accuracy tops off.
Search for good hyperparameters with random search (not grid search). Stage your search from coarse (wide hyperparameter ranges,
training only for 1-5 epochs), to fine (narrower rangers, training for
many more epochs)
Form model ensembles for extra performance
I would argue that the difference in data pre processing makes the difference in performance. He is using padding and random crops, which in essence increases the amount of training samples and decreases the generalization error. Also as the previous poster said you are missing regularization features, such as the weight decay.
You should take another look at the paper and make sure you implement everything like they did.

Training on imbalanced data using TensorFlow

The Situation:
I am wondering how to use TensorFlow optimally when my training data is imbalanced in label distribution between 2 labels. For instance, suppose the MNIST tutorial is simplified to only distinguish between 1's and 0's, where all images available to us are either 1's or 0's. This is straightforward to train using the provided TensorFlow tutorials when we have roughly 50% of each type of image to train and test on. But what about the case where 90% of the images available in our data are 0's and only 10% are 1's? I observe that in this case, TensorFlow routinely predicts my entire test set to be 0's, achieving an accuracy of a meaningless 90%.
One strategy I have used to some success is to pick random batches for training that do have an even distribution of 0's and 1's. This approach ensures that I can still use all of my training data and produced decent results, with less than 90% accuracy, but a much more useful classifier. Since accuracy is somewhat useless to me in this case, my metric of choice is typically area under the ROC curve (AUROC), and this produces a result respectably higher than .50.
Questions:
(1) Is the strategy I have described an accepted or optimal way of training on imbalanced data, or is there one that might work better?
(2) Since the accuracy metric is not as useful in the case of imbalanced data, is there another metric that can be maximized by altering the cost function? I can certainly calculate AUROC post-training, but can I train in such a way as to maximize AUROC?
(3) Is there some other alteration I can make to my cost function to improve my results for imbalanced data? Currently, I am using a default suggestion given in TensorFlow tutorials:
cost = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(pred, y))
optimizer = tf.train.AdamOptimizer(learning_rate=learning_rate).minimize(cost)
I have heard this may be possible by up-weighting the cost of miscategorizing the smaller label class, but I am unsure of how to do this.
(1)It's ok to use your strategy. I'm working with imbalanced data as well, which I try to use down-sampling and up-sampling methods first to make the training set even distributed. Or using ensemble method to train each classifier with an even distributed subset.
(2)I haven't seen any method to maximise the AUROC. My thought is that AUROC is based on true positive and false positive rate, which doesn't tell how well it works on each instance. Thus, it may not necessarily maximise the capability to separate the classes.
(3)Regarding weighting the cost by the ratio of class instances, it similar to Loss function for class imbalanced binary classifier in Tensor flow
and the answer.
Regarding imbalanced datasets, the first two methods that come to mind are (upweighting positive samples, sampling to achieve balanced batch distributions).
Upweighting positive samples
This refers to increasing the losses of misclassified positive samples when training on datasets that have much fewer positive samples. This incentivizes the ML algorithm to learn parameters that are better for positive samples. For binary classification, there is a simple API in tensorflow that achieves this. See (weighted_cross_entropy) referenced below
https://www.tensorflow.org/api_docs/python/tf/nn/weighted_cross_entropy_with_logits
Batch Sampling
This involves sampling the dataset so that each batch of training data has an even distribution positive samples to negative samples. This can be done using the rejections sampling API provided from tensorflow.
https://www.tensorflow.org/api_docs/python/tf/contrib/training/rejection_sample
I'm one who struggling with imbalanced data. What my strategy to counter imbalanced data are as below.
1) Use cost function calculating 0 and 1 labels at the same time like below.
cost = tf.reduce_mean(-tf.reduce_sum(y*tf.log(_pred) + (1-y)*tf.log(1-_pred), reduction_indices=1))
2) Use SMOTE, oversampling method making number of 0 and 1 labels similar. Refer to here, http://comments.gmane.org/gmane.comp.python.scikit-learn/5278
Both strategy worked when I tried to make credit rating model.
Logistic regression is typical method to handle imbalanced data and binary classification such as predicting default rate. AUROC is one of the best metric to counter imbalanced data.
1) Yes. This is well received strategy to counter imbalanced data. But this strategy is good in Neural Nets only if you using SGD.
Another easy way to balance the training data is using weighted examples. Just amplify the per-instance loss by a larger weight/smaller when seeing imbalanced examples. If you use online gradient descent, it can be as simple as using a larger/smaller learning rate when seeing imbalanced examples.
Not sure about 2.

Why the average weight of rnn keeps climbing?

I'm using Pybrain to train a recurrent neural network. However, the average of the weights keeps climbing and after several iterations the train and test accuracy become lower. Now the highest performance on train data is about 55% and on test data is about 50%.
I think maybe the rnn have some training problems because of its high weights. How can I solve it? Thank you in advance.
The usual way to restrict the network parameters is to use a constrained error-functional which somehow penalizes the absolute magnitude of the parameters. Such is done in "weight decay" where you add to your sum-of-squares error the norm of the weights ||w||. Usually this is the Euclidian norm, but sometimes also the 1-norm in which case it is called "Lasso". Note that weight decay is also called ridge regression or Tikhonov regularization.
In PyBrain, according to this page in the documentation, there is available a Lasso-version of weight decay, which can be parametrized by the parameter wDecay.

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