I am stuck trying to run pod install to get my new React-Native App to build. I've had a look online - my xcode-select command is set correctly which seems to be the main solutions to this problem. Here is my output, does anyone have any clues?
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for arm-apple-darwin-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for arm-apple-darwin-gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -arch armv7 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/iPhoneOS.platform/Developer/SDKs/iPhoneOS12.4.sdk
checking whether the C compiler works... no
/Users/lachlanedwards/Library/Caches/CocoaPods/Pods/External/glog/2263bd123499e5b93b5efe24871be317-1f3da/missing: Unknown `--is-lightweight' option
Try `/Users/lachlanedwards/Library/Caches/CocoaPods/Pods/External/glog/2263bd123499e5b93b5efe24871be317-1f3da/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
configure: error: in `/Users/lachlanedwards/Library/Caches/CocoaPods/Pods/External/glog/2263bd123499e5b93b5efe24871be317-1f3da':
configure: error: C compiler cannot create executables
See `config.log' for more details
Related
I have problem to commpile libupnp for iOS.
Commpilation for i386 and x86_64 works very good.
configre can not be passed for armv7, arm64. inttypes.h is missing for iPhoneOS.
Can anybody help me out ?
Configure LOG:
./build-libupnp.sh
Using libupnp-1.6.6.tar.bz2
Building ibupnp for iPhoneOS 8.4 armv7s
Please stand by...
patching file upnp/src/genlib/net/http/httpreadwrite.c
patching file upnp/src/api/upnpapi.c
configure: WARNING: If you wanted to set the --build type, don't use --host.
If a cross compiler is detected then cross compile mode will be used.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for armv7-apple-darwin-strip... no
checking for strip... strip
checking build system type... i386-apple-darwin15.0.0
checking host system type... armv7-apple-darwin
checking for --enable-debug... no
checking for --enable-client... yes
checking for --enable-device... yes
checking for --enable-webserver... yes
checking for --enable-tools... no
checking for --enable-samples... no
checking for documentation directory... ${datarootdir}/doc/libupnp-1.6.6
checking for armv7-apple-darwin-gcc... /Applications/Xcode.app/Contents/Developer/usr/bin/gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /Applications/Xcode.app/Contents/Developer/usr/bin/gcc accepts -g... yes
checking for /Applications/Xcode.app/Contents/Developer/usr/bin/gcc option to accept ISO C89... unsupported
checking for style of include used by make... GNU
checking dependency style of /Applications/Xcode.app/Contents/Developer/usr/bin/gcc... gcc3
checking whether /Applications/Xcode.app/Contents/Developer/usr/bin/gcc and cc understand -c and -o together... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ld used by /Applications/Xcode.app/Contents/Developer/usr/bin/gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/nm
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... /Applications/Xcode.app/Contents/Developer/usr/bin/gcc -E
checking for ANSI C header files... no
checking for sys/types.h... no
checking for sys/stat.h... no
checking for stdlib.h... no
checking for string.h... no
checking for memory.h... no
checking for strings.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... no
checking dlfcn.h usability... no
checking dlfcn.h presence... yes
configure: WARNING: dlfcn.h: present but cannot be compiled
configure: WARNING: dlfcn.h: check for missing prerequisite headers?
configure: WARNING: dlfcn.h: see the Autoconf documentation
configure: WARNING: dlfcn.h: section "Present But Cannot Be Compiled"
configure: WARNING: dlfcn.h: proceeding with the preprocessor's result
configure: WARNING: dlfcn.h: in the future, the compiler will take precedence
configure: WARNING: ## --------------------------------------------- ##
configure: WARNING: ## Report this to mroberto#users.sourceforge.net ##
configure: WARNING: ## --------------------------------------------- ##
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether /Applications/Xcode.app/Contents/Developer/usr/bin/g++ accepts -g... yes
checking dependency style of /Applications/Xcode.app/Contents/Developer/usr/bin/g++... gcc3
checking how to run the C++ preprocessor... /Applications/Xcode.app/Contents/Developer/usr/bin/g++ -E
checking for armv7-apple-darwin-g77... no
checking for armv7-apple-darwin-f77... no
checking for armv7-apple-darwin-xlf... no
checking for armv7-apple-darwin-frt... no
checking for armv7-apple-darwin-pgf77... no
checking for armv7-apple-darwin-cf77... no
checking for armv7-apple-darwin-fort77... no
checking for armv7-apple-darwin-fl32... no
checking for armv7-apple-darwin-af77... no
checking for armv7-apple-darwin-f90... no
checking for armv7-apple-darwin-xlf90... no
checking for armv7-apple-darwin-pgf90... no
checking for armv7-apple-darwin-pghpf... no
checking for armv7-apple-darwin-epcf90... no
checking for armv7-apple-darwin-gfortran... no
checking for armv7-apple-darwin-g95... no
checking for armv7-apple-darwin-f95... no
checking for armv7-apple-darwin-fort... no
checking for armv7-apple-darwin-xlf95... no
checking for armv7-apple-darwin-ifort... no
checking for armv7-apple-darwin-ifc... no
checking for armv7-apple-darwin-efc... no
checking for armv7-apple-darwin-pgf95... no
checking for armv7-apple-darwin-lf95... no
checking for armv7-apple-darwin-ftn... no
checking for g77... no
checking for f77... no
checking for xlf... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... no
checking for g95... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether accepts -g... no
checking the maximum length of command line arguments... 196608
checking command to parse /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/nm output from /Applications/Xcode.app/Contents/Developer/usr/bin/gcc object... ok
checking for objdir... .libs
checking for armv7-apple-darwin-ar... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar
checking for armv7-apple-darwin-ranlib... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib
checking for armv7-apple-darwin-strip... strip
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/gcc supports -fno-rtti -fno-exceptions... yes
checking for /Applications/Xcode.app/Contents/Developer/usr/bin/gcc option to produce PIC... -fno-common
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/gcc PIC flag -fno-common works... yes
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/gcc static flag -static works... no
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/gcc supports -c -o file.o... yes
checking whether the /Applications/Xcode.app/Contents/Developer/usr/bin/gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by /Applications/Xcode.app/Contents/Developer/usr/bin/g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the /Applications/Xcode.app/Contents/Developer/usr/bin/g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for /Applications/Xcode.app/Contents/Developer/usr/bin/g++ option to produce PIC... -fno-common
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/g++ PIC flag -fno-common works... yes
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/g++ static flag -static works... no
checking if /Applications/Xcode.app/Contents/Developer/usr/bin/g++ supports -c -o file.o... yes
checking whether the /Applications/Xcode.app/Contents/Developer/usr/bin/g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin dyld
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for egrep... (cached) /usr/bin/grep -E
--------------------- Default compilation flags -------------------------------
host is armv7-apple-darwin
host_os is darwin
Using non-specific system compiler settings
checking CFLAGS for gcc -Os... -Os
checking CFLAGS for maximum warnings... -Wall
-------------------------------------------------------------------------------
checking for size_t... no
checking for off_t... no
checking for ANSI C header files... (cached) no
checking arpa/inet.h usability... no
checking arpa/inet.h presence... yes
configure: WARNING: arpa/inet.h: present but cannot be compiled
configure: WARNING: arpa/inet.h: check for missing prerequisite headers?
configure: WARNING: arpa/inet.h: see the Autoconf documentation
configure: WARNING: arpa/inet.h: section "Present But Cannot Be Compiled"
configure: WARNING: arpa/inet.h: proceeding with the preprocessor's result
configure: WARNING: arpa/inet.h: in the future, the compiler will take precedence
configure: WARNING: ## --------------------------------------------- ##
configure: WARNING: ## Report this to mroberto#users.sourceforge.net ##
configure: WARNING: ## --------------------------------------------- ##
checking for arpa/inet.h... yes
checking fcntl.h usability... no
checking fcntl.h presence... yes
configure: WARNING: fcntl.h: present but cannot be compiled
configure: WARNING: fcntl.h: check for missing prerequisite headers?
configure: WARNING: fcntl.h: see the Autoconf documentation
configure: WARNING: fcntl.h: section "Present But Cannot Be Compiled"
configure: WARNING: fcntl.h: proceeding with the preprocessor's result
configure: WARNING: fcntl.h: in the future, the compiler will take precedence
configure: WARNING: ## --------------------------------------------- ##
configure: WARNING: ## Report this to mroberto#users.sourceforge.net ##
configure: WARNING: ## --------------------------------------------- ##
checking for fcntl.h... yes
checking for inttypes.h... (cached) no
configure: error: required header file missing
Here is my script for building.
#!/bin/bash
# Automatic build script for libupnp
# for iPhoneOS and iPhoneSimulator
#
###########################################################################
# Change values here
#libupnp
VERSION="1.6.19"
###########################################################################
#
# Don't change anything here
SDKVERSION=`xcrun -sdk iphoneos --show-sdk-version`
CURRENTPATH=`pwd`
ARCHS="x86_64 i386 armv7s arm64"
DEVELOPER=`xcode-select -print-path`
##########
set -e
if [ ! -e libupnp-${VERSION}.tar.bz2 ]; then
echo "Downloading libupnp-${VERSION}.tar.bz2"
curl -O http://pkgs.fedoraproject.org/repo/pkgs/libupnp/libupnp-1.6.6.tar.bz2/8918dcf7428cd119d0c8275765ff2833/libupnp-${VERSION}.tar.bz2
else
echo "Using libupnp-${VERSION}.tar.bz2"
fi
mkdir -p bin
mkdir -p lib
mkdir -p src
for ARCH in ${ARCHS}
do
if [[ "${ARCH}" == "i386" || "${ARCH}" == "x86_64" ]];
then
PLATFORM="iPhoneSimulator"
else
PLATFORM="iPhoneOS"
fi
echo "Building libupnp for ${PLATFORM} ${SDKVERSION} ${ARCH}"
echo "Please stand by..."
rm -rf src/libupnp-${VERSION}
tar zxf libupnp-${VERSION}.tar.bz2 -C src
if [[ "${ARCH}" == "i386" || "${ARCH}" == "x86_64" ]] ; then
export BUILD_DEVROOT="${DEVELOPER}/Platforms/${PLATFORM}.platform/Developer"
export BUILD_SDKROOT="${BUILD_DEVROOT}/SDKs/${PLATFORM}${SDKVERSION}.sdk"
else
export BUILD_DEVROOT="${DEVELOPER}/Toolchains/XcodeDefault.xctoolchain"
export BUILD_SDKROOT="${DEVELOPER}/Platforms/iPhoneOS.platform/Developer/SDKs/${PLATFORM}${SDKVERSION}.sdk"
fi
export LD=${BUILD_DEVROOT}/usr/bin/ld
export CC=${DEVELOPER}/usr/bin/gcc
export CXX=${DEVELOPER}/usr/bin/g++
if [[ "${ARCH}" == "i386" || "${ARCH}" == "x86_64" ]];
then
export AR=${DEVELOPER}/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar
export AS=${DEVELOPER}/Toolchains/XcodeDefault.xctoolchain/usr/bin/as
export NM=${DEVELOPER}/Toolchains/XcodeDefault.xctoolchain/usr/bin/nm
export RANLIB=${DEVELOPER}/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib
else
export AR=${BUILD_DEVROOT}/usr/bin/ar
export AS=${BUILD_DEVROOT}/usr/bin/as
export NM=${BUILD_DEVROOT}/usr/bin/nm
export RANLIB=${DEVROOT}/usr/bin/ranlib
fi
export LDFLAGS="-arch ${ARCH} -pipe -no-cpp-precomp -isysroot ${BUILD_SDKROOT} -L${CURRENTPATH}/lib -miphoneos-version-min=7.0"
export CFLAGS="-arch ${ARCH} -pipe -no-cpp-precomp -isysroot ${BUILD_SDKROOT} -I${CURRENTPATH}/include -I/usr/include -miphoneos-version-min=7.0"
export CXXFLAGS="-arch ${ARCH} -pipe -no-cpp-precomp -isysroot ${BUILD_SDKROOT} -I${CURRENTPATH}/include -miphoneos-version-min=7.0"
mkdir -p "${CURRENTPATH}/bin/${PLATFORM}${SDKVERSION}-${ARCH}.sdk"
LOG="${CURRENTPATH}/bin/${PLATFORM}${SDKVERSION}-${ARCH}.sdk/build-libupnp-error-${VERSION}.log"
HOST=${ARCH}
if [ "${ARCH}" == "arm64" ];
then
HOST="aarch64"
fi
./configure --host=${HOST}-apple-darwin --prefix="${CURRENTPATH}/bin/${PLATFORM}${SDKVERSION}-${ARCH}.sdk" --disable-shared --enable-static --disable-assembly
make
make install
cd ${CURRENTPATH}
rm -rf src/libupnp-${VERSION}
done
echo "Build library..."
lipo -create ${CURRENTPATH}/bin/iPhoneSimulator${SDKVERSION}-i386.sdk/lib/liblibupnp.a ${CURRENTPATH}/bin/iPhoneSimulator${SDKVERSION}-x86_64.sdk/lib/liblibupnp.a ${CURRENTPATH}/bin/iPhoneOS${SDKVERSION}-armv7.sdk/lib/liblibupnp.a ${CURRENTPATH}/bin/iPhoneOS${SDKVERSION}-armv7s.sdk/lib/liblibupnp.a ${CURRENTPATH}/bin/iPhoneOS${SDKVERSION}-arm64.sdk/lib/liblibupnp.a -output ${CURRENTPATH}/lib/liblibupnp.a
mkdir -p ${CURRENTPATH}/include/libupnp
cp -R ${CURRENTPATH}/bin/iPhoneSimulator${SDKVERSION}-i386.sdk/include/ ${CURRENTPATH}/include/libupnp/
echo "Building done."
Below is what I am getting when I type ./configure on terminal while inside the clustal omega package.
Welcome to Clustal Omega - version 1.2.1 (AndreaGiacomo)
+NMMMMMMMMMS=
MMMMM? :MMMMM8
IMMMMS MMMMM,
~MMMMN ,MMMMM
=MMMMM MMMMM
?MMMMM +MMMMM
MMMMMS MMMMM
MMMMM MMMMM:
MMMMM MMMMM+
MMMMM MMMMM~
MMMMM MMMMM
MMMMMZ MMMMM
MMMMM ,MMMMZ
MMMM8 MMMM+
MMMMS MMMM,
MMMMO MMMM
,N SMMM MMM8 +8
,M7 M+ M+ :M8
,MMMMMMMMMMMMI MMMMMMMMMMMM8
,MMMMMMMMMMMM8 MMMMMMMMMMMM8
,MMMMMMMMMMMMN MMMMMMMMMMMM8
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking build system type... i386-apple-darwin13.4.0
checking host system type... i386-apple-darwin13.4.0
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
checking how to run the C++ preprocessor... g++ -E
checking for ANSI C header files... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for memory.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for inline... inline
checking for log in -lm... yes
checking for log2 in -lm... yes
checking argtable2.h usability... yes
checking argtable2.h presence... yes
checking for argtable2.h... yes
checking for arg_parse in -largtable2... yes
checking for OpenMP flag of C compiler... unknown
checking whether byte ordering is bigendian... no
checking for ntohs... yes
checking for ntohl... yes
checking for ntons... no
checking for ntonl... no
checking size of unsigned short... 2
checking size of unsigned int... 4
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking for stroul... no
checking for strtoull... yes
checking for ftello... yes
checking for fseeko... yes
checking for ftello64... no
checking for fseeko64... no
checking for ftell64... no
checking for fseek64... no
checking for off_t... yes
checking size of fpos_t... 8
checking if malloc debugging is wanted... no
checking whether to build with debug information... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating clustalo.pc
config.status: creating Doxyfile
config.status: creating src/clustal/Makefile
config.status: creating src/hhalign/Makefile
config.status: creating src/kmpp/Makefile
config.status: creating src/squid/Makefile
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing src/clustal-omega-config.h commands
config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines
config.status: src/clustal-omega-config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
then, when I "make", I am getting,
Making all in src
/Applications/Xcode.app/Contents/Developer/usr/bin/make all-recursive
Making all in hhalign
make[3]: Nothing to be done for `all'.
Making all in squid
make[3]: Nothing to be done for `all'.
Making all in kmpp
make[3]: Nothing to be done for `all'.
Making all in clustal
make[3]: Nothing to be done for `all'.
make[1]: Nothing to be done for `all-am'.
It must work fine when I type "make" so I move on and install the clustal omega. But that was what I have been getting. Please tell me what to do.
After typing the make command you must type
make install
Assuming you have all of the correct dependencies installed, namely argtable2.h, this should install clustal omega for you.
Does the program open if you type
clustal
At the command line?
I have a jailbroken iphone 4s running 7.1.2 and I downloaded the IOS Tool chain from cydia. while trying to run the configure script for libressl i get...
Nah-Niggass-iPhone:/User/libressl-2.0.5 root# ./configure
checking build system type... arm-apple-darwin14.0.0
checking host system type... arm-apple-darwin14.0.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... no
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for gcc... no
checking for cc... no
checking for cl.exe... no
configure: error: in `/User/libressl-2.0.5':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details
So I added these lines to /etc/profile
PATH="$PATH:$HOME/bin:/usr/sbin:/usr/bin:/root/bin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin:/bin:/sbin:/opt/csw/bin:/opt/csw/sbin:/opt/csw/gcc3/bin:/usr/sfw/sbin:/usr/sfw/bin:/opt/csw/mysql5/bin"
export PATH
But I still get the same error. I then checked config.log and it's show's the correct Path to clang
PATH: /usr/bin/clang
So How do i get ./configure working on a iphone?
End result is I'm trying to get Ruby on Rails installed on my OS 10.7.3, but having various issues.
Also, I have a freshly installed XCode 4.3 from the App Store.
When I fire up the terminal, and enter:
sudo gem install rails
and it writes out:
Building native extensions. This could take a while...
ERROR: Error installing rails:
ERROR: Failed to build gem native extension.
/System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby extconf.rb
mkmf.rb can't find header files for ruby at /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/lib/ruby/ruby.h
Gem files will remain installed in /Library/Ruby/Gems/1.8/gems/json-1.6.5 for inspection.
Results logged to /Library/Ruby/Gems/1.8/gems/json-1.6.5/ext/json/ext/parser/gem_make.out
In all of the fixes I'm finding says to install XCode, which I have and runs just fine. However, I did uninstall a previous version of XCode to install the latest version, so I'm wondering if there is any relation there.
EDIT 1:
I've followed Jasdeep suggestion and installed RVM. But once i run:
sudo rvm install 1.9.3
I get the following:
Fetching yaml-0.1.4.tar.gz to /Users/xxx/.rvm/archives
Extracting yaml-0.1.4.tar.gz to /Users/xxx/.rvm/src
Configuring yaml in /Users/xxx/.rvm/src/yaml-0.1.4.
Error running ' ./configure --prefix="/Users/xxx/.rvm/usr" ', please read /Users/xxx/.rvm/log/ruby-1.9.3-p0/yaml/configure.log
Compiling yaml in /Users/xxx/.rvm/src/yaml-0.1.4.
Error running 'make ', please read /Users/xxx/.rvm/log/ruby-1.9.3-p0/yaml/make.log
Database file /Users/xxx/.rvm/config/packages does not exist.
gcc-4.2: error trying to exec '/usr/bin/i686-apple-darwin11-gcc-4.2.1': execvp: No such file or directory
Installing Ruby from source to: /Users/xxx/.rvm/rubies/ruby-1.9.3-p0, this may take a while depending on your cpu(s)...
ruby-1.9.3-p0 - #fetching
ruby-1.9.3-p0 - #downloading ruby-1.9.3-p0, this may take a while depending on your connection...
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 9330k 100 9330k 0 0 645k 0 0:00:14 0:00:14 --:--:-- 1260k
ruby-1.9.3-p0 - #extracting ruby-1.9.3-p0 to /Users/xxx/.rvm/src/ruby-1.9.3-p0
ruby-1.9.3-p0 - #extracted to /Users/xxx/.rvm/src/ruby-1.9.3-p0
ruby-1.9.3-p0 - #configuring
Error running ' ./configure --prefix=/Users/xxx/.rvm/rubies/ruby-1.9.3-p0 --enable-shared --disable-install-doc --with-libyaml --with-opt-dir=/Users/xxx/.rvm/usr ', please read /Users/xxx/.rvm/log/ruby-1.9.3-p0/configure.log
There has been an error while running configure. Halting the installation.
So then I looked up what was in the log file, ..ruby-1.9.3-p0/yaml/configure.log:
[2012-03-03 22:49:50] ./configure --prefix="/Users/xxx/.rvm/usr"
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... no
checking for gcc... no
checking for cc... no
checking for cl.exe... no
configure: error: in `/Users/xxx/.rvm/src/yaml-0.1.4':
configure: error: no acceptable C compiler found in $PATH
See `config.log' for more details
So now it appears the error is:
no acceptable C compiler found in $PATH
Edit 2:
I've followed matt's instructions and was able to get further once I got the command-line tools installed (since I have Xcode 4.3 now). However, I'm still getting an error:
Fetching yaml-0.1.4.tar.gz to /Users/xxx/.rvm/archives
Extracting yaml-0.1.4.tar.gz to /Users/xxx/.rvm/src
Configuring yaml in /Users/xxx/.rvm/src/yaml-0.1.4.
Compiling yaml in /Users/xxx/.rvm/src/yaml-0.1.4.
Installing yaml to /Users/xxx/.rvm/usr
gcc-4.2: error trying to exec '/usr/bin/i686-apple-darwin11-gcc-4.2.1': execvp: No such file or directory
Installing Ruby from source to: /Users/xxx/.rvm/rubies/ruby-1.9.3-p0, this may take a while depending on your cpu(s)...
ruby-1.9.3-p0 - #fetching
ruby-1.9.3-p0 - #extracted to /Users/xxx/.rvm/src/ruby-1.9.3-p0 (already extracted)
ruby-1.9.3-p0 - #configuring
Error running ' ./configure --prefix=/Users/xxx/.rvm/rubies/ruby-1.9.3-p0 --enable-shared --disable-install-doc --with-libyaml --with-opt-dir=/Users/xxx/.rvm/usr ', please read /Users/xxx/.rvm/log/ruby-1.9.3-p0/configure.log
There has been an error while running configure. Halting the installation.
Below is the configure.log (sorry this post is getting so long, but hopefully it can help others too):
[2012-03-04 09:29:35] ./configure --prefix="/Users/xxx/.rvm/usr"
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking build system type... x86_64-apple-darwin11.3.0
checking host system type... x86_64-apple-darwin11.3.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin11.3.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for doxygen... false
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
configure: creating ./config.status
config.status: creating yaml-0.1.pc
config.status: creating include/Makefile
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating tests/Makefile
config.status: creating win32/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
The problem is that in Lion Xcode 4.3 doesn't by default install (or even include) the command-line tools such as gcc - and those are what are needed here. In the Downloads pane of Xcode's prefs, under Components, ask for the command-line tools. (See the readme: https://developer.apple.com/library/content/documentation/DeveloperTools/Conceptual/WhatsNewXcode/Chapters/xcode_4_0.html#//apple_ref/doc/uid/TP40016147-SW35)
Actually I believe you didn't need to install Xcode at all, since in fact the command-line tool can now be downloaded and installed separately.
I already had Command-line tools installed (xCode as well)... and still had this (initial) error.
The problem was that xCode and the command line tools are no longer installing the gcc compiler. I don't know when they stopped shipping it, but I run mountain lion, and it's not here.
So what eventually solved my problem was installing gcc from scratch (https://github.com/kennethreitz/osx-gcc-installer).
Keep Smiling :)
If someone has the same problem for Ubuntu Linux, the solution was:
sudo apt-get install build-essential
sudo apt-get install libsqlite3-dev
I'm want to compile a c library for the iphone. I'm totally unexperienced with that and googled around and found this her: Compile C lib for iPhone
The original source code of the project I want to build compiles fine on my mac and the result contains the following directory structure
bin include lib share
So after that I now want to build this stuff so that I can use it on my iphone. For the first step I just copy and pasted the configure command from the link above and hit enter. This is the result:
./configure --build=arm-apple-darwin --enable-static=yes --enable-shared=no CC=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/arm-apple-darwin10-gcc-4.2.1 CFLAGS="-pipe -std=c99 -Wno-trigraphs -fpascal-strings -O0 -Wreturn-type -Wunused-variable -fmessage-length=0 -fvisibility=hidden -miphoneos-version-min=3.1.2 -gdwarf-2 -mthumb -I/Library/iPhone/include -isysroot /Developer/Platforms/iPhoneOS.platform/Developer/SDKs/iPhoneOS4.0.sdk -mdynamic-no-pic" CPP=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/cpp AR=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/ar AS=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/as LIBTOOL=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/libtool STRIP=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/strip RANLIB=/Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/ranlib
checking build system type... arm-apple-darwin
checking host system type... arm-apple-darwin
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking host system type... posix
checking for gcc... /Developer/Platforms/iPhoneOS.platform/Developer/usr/bin/arm-apple-darwin10-gcc-4.2.1
checking whether the C compiler works... no
configure: error: in `/path/to/gwenhywfar-4.3.0-src':
configure: error: C compiler cannot create executables
But what is the problem with that? How can this be repaired? Am I right if I assume that preventing creating binary executables would be the solution?