Unable to start neo4j with systemctl: 'Failed to load from plugin jar' - neo4j

I've been trying to restart neo4j after adding new data on an EC2 instance. I stopped the neo4j instance, then I called systemctl start neo4j, but when I call cypher-shell it says Connection refused, and connection to the browser port doesn't work anymore.
In the beginning I assumed it was a heap space problem, since looking at the debug.log it said there was a memory issue. I adjusted the heap space and cache settings in neo4j.conf as recommended by neo4j-admin memrec, but still neo4j won't start.
Then I assumed it was because my APOC package was outdated. My neo4j version is 3.5.6, but APOC is 3.5.0.3. I download the latest 3.5.0.4 version, but still neo4j won't start.
At last I tried chmod 777 on every file in the data/database and plugin directories and the directories themselves, but still neo4j won't start.
What's strange is when I try neo4j console for all of these attempts, both cypher-shell and the neo4j browser port works just fine. However, obviously I would prefer to be able to launch neo4j with systemctl.
Right now the only hint of error I can find in debug.log is the following:
2019-06-19 21:19:55.508+0000 INFO [o.n.i.d.DiagnosticsManager] Storage summary:
2019-06-19 21:19:55.508+0000 INFO [o.n.i.d.DiagnosticsManager] Total size of store: 3.07 GB
2019-06-19 21:19:55.509+0000 INFO [o.n.i.d.DiagnosticsManager] Total size of mapped files: 3.07 GB
2019-06-19 21:19:55.509+0000 INFO [o.n.i.d.DiagnosticsManager] --- STARTED diagnostics for KernelDiagnostics:StoreFiles
END ---
2019-06-19 21:19:55.509+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] Fulfilling of requirement 'Database available' mak
es database available.
2019-06-19 21:19:55.509+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] Database is ready.
2019-06-19 21:19:55.568+0000 INFO [o.n.k.i.DatabaseHealth] Database health set to OK
2019-06-19 21:19:56.198+0000 WARN [o.n.k.i.p.Procedures] Failed to load `apoc.util.s3.S3URLConnection` from plugin jar `
/var/lib/neo4j/plugins/apoc-3.5.0.4-all.jar`: com/amazonaws/ClientConfiguration
2019-06-19 21:19:56.199+0000 WARN [o.n.k.i.p.Procedures] Failed to load `apoc.util.s3.S3Aws` from plugin jar `/var/lib/n
eo4j/plugins/apoc-3.5.0.4-all.jar`: com/amazonaws/auth/AWSCredentials
2019-06-19 21:19:56.200+0000 WARN [o.n.k.i.p.Procedures] Failed to load `apoc.util.s3.S3Aws$1` from plugin jar `/var/lib
/neo4j/plugins/apoc-3.5.0.4-all.jar`: com/amazonaws/services/s3/model/S3ObjectInputStream
2019-06-19 21:19:56.207+0000 WARN [o.n.k.i.p.Procedures] Failed to load `apoc.util.hdfs.HDFSUtils$1` from plugin jar `/v
ar/lib/neo4j/plugins/apoc-3.5.0.4-all.jar`: org/apache/hadoop/fs/FSDataInputStream
2019-06-19 21:19:56.208+0000 WARN [o.n.k.i.p.Procedures] Failed to load `apoc.util.hdfs.HDFSUtils` from plugin jar `/var
/lib/neo4j/plugins/apoc-3.5.0.4-all.jar`: org/apache/hadoop/fs/FSDataOutputStream
...
...
...
2019-06-19 21:20:00.678+0000 INFO [o.n.g.f.GraphDatabaseFacadeFactory] Shutting down database.
2019-06-19 21:20:00.679+0000 INFO [o.n.g.f.GraphDatabaseFacadeFactory] Shutdown started
2019-06-19 21:20:00.679+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] Database is unavailable.
2019-06-19 21:20:00.684+0000 INFO [o.n.k.i.t.l.c.CheckPointerImpl] Checkpoint triggered by "Database shutdown" # txId: 1
checkpoint started...
2019-06-19 21:20:00.704+0000 INFO [o.n.k.i.t.l.c.CheckPointerImpl] Checkpoint triggered by "Database shutdown" # txId: 1
checkpoint completed in 20ms
2019-06-19 21:20:00.705+0000 INFO [o.n.k.i.t.l.p.LogPruningImpl] No log version pruned, last checkpoint was made in vers
ion 0
2019-06-19 21:20:00.725+0000 INFO [o.n.i.d.DiagnosticsManager] --- STOPPING diagnostics START ---
2019-06-19 21:20:00.725+0000 INFO [o.n.i.d.DiagnosticsManager] --- STOPPING diagnostics END ---
2019-06-19 21:20:00.725+0000 INFO [o.n.g.f.GraphDatabaseFacadeFactory] Shutdown started
2019-06-19 21:20:05.875+0000 INFO [o.n.g.f.m.e.CommunityEditionModule] No locking implementation specified, defaulting
to 'community'
2019-06-19 21:20:06.080+0000 INFO [o.n.g.f.GraphDatabaseFacadeFactory] Creating database.
2019-06-19 21:20:06.154+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] Requirement `Database available` makes database unavailable.
2019-06-19 21:20:06.156+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] Database is unavailable.
2019-06-19 21:20:06.183+0000 INFO [o.n.i.d.DiagnosticsManager] --- INITIALIZED diagnostics START ---
I think the warning isn't an issue, since it's just a warning and not an error or exception. Also it seems that the database just shuts down automatically, and then restarts, creating an infinite loop. This loop does not happen when I call neo4j console (all the warnings still exist in the logs). All my ports are default.
Any clue why this is happening? I've never encountered this error when I previously launched neo4j on this instance.

If it works with neo4j console but not with systemctl, you should check the rights of the Neo4j folder.
I'm pretty sure you have a problem on it, and that the systemctl doesn't run Neo4j with the same user as you

Related

Neo4j.conf restart issue: ExitOnOutOfMemoryError

When using neo4j-admin memrec there is a recommendation to activate the following in the neo4j.conf file:
dbms.jvm.additional=-XX:+ExitOnOutOfMemoryError
However if I add the line in, I am unable to restart the neo4j service at all. If I check the debug log the service does not even begin to startup. Is there an error in that particular suggested config line that prevents the service from starting before it has even checked anything else?
:~$ sudo service neo4j restart
:~$ tail -f /var/log/neo4j/debug.log
2022-01-24 14:49:26.937+0000 INFO [o.n.d.d.DefaultDatabaseManager] Stopped 'DatabaseId{21dafb04[neo4j]}' successfully.
2022-01-24 14:49:26.937+0000 INFO [o.n.d.d.DefaultDatabaseManager] Stopping 'DatabaseId{00000000[system]}'.
2022-01-24 14:49:26.938+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] [system/00000000] Requirement `Database unavailable` makes database system unavailable.
2022-01-24 14:49:26.938+0000 INFO [o.n.k.a.DatabaseAvailabilityGuard] [system/00000000] DatabaseId{00000000[system]} is unavailable.
2022-01-24 14:49:26.939+0000 INFO [o.n.k.d.Database] [system/00000000] Waiting for closing transactions.
2022-01-24 14:49:26.940+0000 INFO [o.n.k.d.Database] [system/00000000] All transactions are closed.
2022-01-24 14:49:26.940+0000 INFO [o.n.k.i.t.l.c.CheckPointerImpl] [system/00000000] Checkpoint triggered by "Database shutdown" # txId: 71 checkpoint started. ..
2022-01-24 14:49:26.956+0000 INFO [o.n.k.i.t.l.c.CheckPointerImpl] [system/00000000] Checkpoint triggered by "Database shutdown" # txId: 71 checkpoint completed in 15ms
2022-01-24 14:49:26.956+0000 INFO [o.n.k.i.t.l.p.LogPruningImpl] [system/00000000] No log version pruned. The strategy used was '1 days'.
2022-01-24 14:49:26.974+0000 INFO [o.n.d.d.DefaultDatabaseManager] Stopped 'DatabaseId{00000000[system]}' successfully.

Graphaware Framework and UUID not starting on Neo4j GrapheneDB

I am trying to get the Graphaware Framework and UUID running on a GrapheneDB instance. I have followed the instructions to zip the JAR and neo4j.properties files and uploaded using the GrapheneDB Web Interface but UUID's are not added when I create a new node.
neo4j.properties file
dbms.unmanaged_extension_classes=com.graphaware.server=/graphaware
com.graphaware.runtime.enabled=true
#UIDM becomes the module ID:
com.graphaware.module.UIDM.1=com.graphaware.module.uuid.UuidBootstrapper
#optional, default is uuid:
com.graphaware.module.UIDM.uuidProperty=uuid
#optional, default is false:
com.graphaware.module.UIDM.stripHyphens=true
#optional, default is all nodes:
#com.graphaware.module.UIDM.node=hasLabel('Label1') || hasLabel('Label2')
#optional, default is no relationships:
#com.graphaware.module.UIDM.relationship=isType('Type1')
com.graphaware.module.UIDM.relationship=com.graphaware.runtime.policy.all.IncludeAllBusinessRelationships
#optional, default is uuidIndex
com.graphaware.module.UIDM.uuidIndex=uuidIndex
#optional, default is uuidRelIndex
com.graphaware.module.UIDM.uuidRelationshipIndex=uuidRelIndex
Log Output
2017-03-02 10:20:40.184+0000 INFO Neo4j Server shutdown initiated by
request 2017-03-02 10:20:40.209+0000 INFO
[c.g.s.f.b.GraphAwareServerBootstrapper] stopped 2017-03-02
10:20:40.209+0000 INFO Stopping... 2017-03-02 10:20:40.982+0000 INFO
Stopped. 2017-03-02 10:20:43.402+0000 INFO Starting... 2017-03-02
10:20:43.820+0000 INFO Bolt enabled on 0.0.0.0:7475. 2017-03-02
10:20:45.153+0000 INFO [c.g.r.b.RuntimeKernelExtension] GraphAware
Runtime disabled. 2017-03-02 10:20:48.130+0000 INFO Started.
2017-03-02 10:20:48.343+0000 INFO
[c.g.s.f.b.GraphAwareServerBootstrapper] started 2017-03-02
10:20:48.350+0000 INFO Mounted unmanaged extension
[com.graphaware.server] at [/graphaware] 2017-03-02 10:20:48.724+0000
INFO Mounting GraphAware Framework at /graphaware 2017-03-02
10:20:48.755+0000 INFO Will try to scan the following packages:
{com..graphaware.,org..graphaware.,net..graphaware.}
2017-03-02 10:20:52.633+0000 INFO Remote interface available at
http://localhost:7474/
Messages.log Extract
2017-03-02 10:33:59.991+0000 INFO [o.n.k.i.DiagnosticsManager] ---
STARTED diagnostics for KernelDiagnostics:StoreFiles END ---
2017-03-02 10:34:01.846+0000 INFO [o.n.k.i.DiagnosticsManager] ---
SERVER STARTED START --- 2017-03-02 10:34:02.526+0000 INFO
[c.g.s.f.b.GraphAwareBootstrappingFilter] Mounting GraphAware
Framework at /graphaware 2017-03-02 10:34:02.547+0000 INFO
[c.g.s.f.c.GraphAwareWebContextCreator] Will try to scan the following
packages:
{com..graphaware.,org..graphaware.,net..graphaware.}
2017-03-02 10:34:06.100+0000 INFO [o.n.k.i.DiagnosticsManager] ---
SERVER STARTED END ---
It looks like the framework is not started but I have set enabled=true in the properties file.
Environment Setup
Neo4j Community Edition 3.1.1
graphaware-server-3.1.0.44
graphaware-uuid-3.1.0.44.13
Thanks

neo4j failed to start on my machine

I use brew install neo4j, when i'm trying to start on terminal by neo4j start, it keep loading forever as following.
$ neo4j start Using additional JVM arguments: -server
-XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties
-Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -XX:-OmitStackTraceInFastThrow -Dneo4j.ext.udc.source=homebrew
-Djava.awt.headless=true Starting Neo4j Server...WARNING: not changing user process [9320]... waiting for server to be ready ........................................................................... ........................................................................... ........................................................................... ......................................................................
Failed to start within 120 seconds.
Neo4j Server may have failed to start, please check the logs.
I checked some logs from neo4j already ...but it show nothing error
log messgea from /usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/messages.log
2015-05-21 06:46:44.248+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2015-05-21 06:46:44.248+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore.relationshipgroupstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=25b)
2015-05-21 06:46:44.249+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=81b)
2015-05-21 06:46:44.310+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2015-05-21 06:46:44.333+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2015-05-21 06:46:44.414+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Opened logical log [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/nioneo_logical.log.1] version=0, lastTxId=1 (clean)
2015-05-21 06:46:44.417+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Rebuilding lucene scan store, this may take a while
2015-05-21 06:46:44.418+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Lucene scan store rebuilt (roughly -1 nodes)
2015-05-21 06:46:44.421+0000 INFO [o.n.k.i.t.TxManager]: TM new log: tm_tx_log.1
2015-05-21 06:46:44.425+0000 INFO [o.n.k.i.t.KernelHealth]: Kernel health set to OK
log message from /usr/local/Cellar/neo4j/2.1.6/libexec/data/log/console.log
2015-05-21 06:46:43.878+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
2015-05-21 06:57:03.825+0000 INFO [API] Successfully shutdown Neo4j Server.
I try to use brew to re-install neo4j, but it doesn't help.
i'm using mac machine.
java version /Library/Java/JavaVirtualMachines/jdk1.7.0_71.jdk/Contents/Home/bin/java
Can you try to run bin/neo4j console to let it finish the startup.
Probably it is creating / updating an index or an internal structure that takes longer than the 120s timeout?
see
2015-05-21 06:46:44.417+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Rebuilding lucene scan store, this may take a while
2015-05-21 06:46:44.418+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Lucene scan store rebuilt (roughly -1 nodes)

Neo4j randomly shutting down

I am running neo4j on an EC2 instance. But for some reason it randomly shuts down from time to time. Is there a way to check the shutdown logs? And is there a way to automatically restart the server? I couldn't locate the log folder. But here's what my messages.log file looks like. This section covers the timeframe when the server went down (before 2015-04-13 05:39:59.084+0000) and when I manually restarted the server (at 2015-04-13 05:39:59.084+0000). You can see that there is no record of server issue or shutdown. Time frame before 2015-03-05 08:18:47.084+0000 contains info of the previous server restart.
2015-03-05 08:18:44.180+0000 INFO [o.n.s.m.Neo4jBrowserModule]: Mounted Neo4j Browser at [/browser]
2015-03-05 08:18:44.253+0000 INFO [o.n.s.w.Jetty9WebServer]: Mounting static content at [/webadmin] from [webadmin-html]
2015-03-05 08:18:44.311+0000 INFO [o.n.s.w.Jetty9WebServer]: Mounting static content at [/browser] from [browser]
2015-03-05 08:18:47.084+0000 INFO [o.n.s.CommunityNeoServer]: Server started on: http://0.0.0.0:7474/
2015-03-05 08:18:47.084+0000 INFO [o.n.s.CommunityNeoServer]: Remote interface ready and available at [http://0.0.0.0:7474/]
2015-03-05 08:18:47.084+0000 INFO [o.n.k.i.DiagnosticsManager]: --- SERVER STARTED END ---
2015-04-13 05:39:59.084+0000 INFO [o.n.s.CommunityNeoServer]: Setting startup timeout to: 120000ms based on -1
2015-04-13 05:39:59.265+0000 INFO [o.n.k.InternalAbstractGraphDatabase]: No locking implementation specified, defaulting to 'community'
2015-04-13 05:39:59.383+0000 INFO [o.n.k.i.DiagnosticsManager]: --- INITIALIZED diagnostics START ---
2015-04-13 05:39:59.384+0000 INFO [o.n.k.i.DiagnosticsManager]: Neo4j Kernel properties:
2015-04-13 05:39:59.389+0000 INFO [o.n.k.i.DiagnosticsManager]: neostore.propertystore.db.mapped_memory=78M
2015-04-13 05:39:59.389+0000 INFO [o.n.k.i.DiagnosticsManager]: neostore.nodestore.db.mapped_memory=21M

Unable to load webadmin for Neo4j High Availability

I have installed 3 instances of neo4j version 1.9.4 on a linux machine, in 3 different directories: Neo4j01, neo4j02, neo4j03.
I have updated the configuration files neo4j.properties and neo4j-server.properties as mentioned in the link (http://docs.neo4j.org/chunked/milestone/ha-setup-tutorial.html).
When I start all the neo4j instances one after the other, they are successfully installing, but after some time 2 of the 3 neo4j process/instances are automatically disappearing. I noticed it via ps -aef | grep neo4j.
When I checked console logs then i found below errors:
2013-11-12 16:37:32.512+0000 INFO [Cluster] Checking store consistency with master
2013-11-12 16:37:33.174+0000 INFO [Cluster] Store is consistent
2013-11-12 16:37:33.176+0000 INFO [Cluster] Catching up with master
2013-11-12 16:37:33.276+0000 INFO [Cluster] Now consistent with master
2013-11-12 16:37:34.442+0000 INFO [Cluster] ServerId 2, successfully moved to slave for master ha://localhost.localdomain:6363?serverId=1
2013-11-12 16:37:34.689+0000 INFO [Cluster] Instance 1 is available as backup at backup://localhost.localdomain:6366
2013-11-12 16:37:34.798+0000 INFO [Cluster] Instance 2 (this server) is available as slave at ha://localhost.localdomain:6364?serverId=2
2013-11-12 16:37:35.036+0000 INFO [Cluster] Database available for write transactions
2013-11-12 16:37:35.360+0000 INFO [API] Successfully started database
2013-11-12 16:37:36.079+0000 INFO [API] Starting HTTP on port :7474 with 10 threads available
2013-11-12 16:37:40.596+0000 INFO [Cluster] Instance 3 has failed
2013-11-12 16:37:43.654+0000 INFO [API] Enabling HTTPS on port :7473
2013-11-12 16:38:01.081+0000 INFO [API] Mounted REST API at: /db/manage/
2013-11-12 16:38:01.158+0000 INFO [API] Mounted discovery module at [/]
2013-11-12 16:38:02.375+0000 INFO [API] Loaded server plugin "CypherPlugin"
2013-11-12 16:38:02.449+0000 INFO [API] Loaded server plugin "GremlinPlugin"
2013-11-12 16:38:02.462+0000 INFO [API] Mounted REST API at [/db/data/]
2013-11-12 16:38:02.534+0000 INFO [API] Mounted management API at [/db/manage/]
2013-11-12 16:38:03.568+0000 INFO [API] Mounted webadmin at [/webadmin]
2013-11-12 16:38:06.189+0000 INFO [API] Mounting static content at [/webadmin] from [webadmin-html]
2013-11-12 16:38:30.844+0000 DEBUG [API] Failed to start Neo Server on port [7474], reason [org.mortbay.util.MultiException[java.net.BindException: Address already in use, java.net.BindException: Address already in use]]
2013-11-12 16:38:30.880+0000 DEBUG [API] org.neo4j.server.ServerStartupException: Starting Neo4j Server failed: org.mortbay.util.MultiException[java.net.BindException: Address already in use, java.net.BindException: Address already in use]
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:211) ~[neo4j-server-1.9.4.jar:1.9.4]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:86) [neo4j-server-1.9.4.jar:1.9.4]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:49) [neo4j-server-1.9.4.jar:1.9.4]
Caused by: java.lang.RuntimeException: org.mortbay.util.MultiException[java.net.BindException: Address already in use, java.net.BindException: Address already in use]
at org.neo4j.server.web.Jetty6WebServer.startJetty(Jetty6WebServer.java:334) ~[neo4j-server-1.9.4.jar:1.9.4]
at org.neo4j.server.web.Jetty6WebServer.start(Jetty6WebServer.java:154) ~[neo4j-server-1.9.4.jar:1.9.4]
at org.neo4j.server.AbstractNeoServer.startWebServer(AbstractNeoServer.java:344) ~[neo4j-server-1.9.4.jar:1.9.4]
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:187) ~[neo4j-server-1.9.4.jar:1.9.4]
... 2 common frames omitted
Caused by: org.mortbay.util.MultiException: Multiple exceptions
at org.mortbay.jetty.Server.doStart(Server.java:188) ~[jetty-6.1.25.jar:6.1.25]
at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50) ~[jetty-util-6.1.25.jar:6.1.25]
at org.neo4j.server.web.Jetty6WebServer.startJetty(Jetty6WebServer.java:330) ~[neo4j-server-1.9.4.jar:1.9.4]
... 5 common frames omitted
2013-11-12 16:38:30.894+0000 DEBUG [API] Failed to start Neo Server on port [7474]
Now, only neo4j01 process is running and neo4j02 and neo4j03 processes are disappeared. But even though neo4j01 process is up and running I am unable to access the webadmin page at http://htname:7474/webadmin/#/info/org.neo4j/High%20Availability/.
Please, can someone shed some light on this?
You might want to take a look at https://github.com/neo-technology/neo4j-enterprise-local-qa. This contains a rakefile that automates a local setup of 3 instances. Clone the repo locally, and use
rake setup_cluster start_cluster
to bring a locally running cluster online. Shutdown can be done via
rake stop_cluster
Find the configs in machine[ABC]/conf/.

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