Merge two docker run commands together - docker

I have two docker run commands as given below but I would like to merge these two commands together and execute it.
1st command - Start orthanc just with web viewer enabled
docker run -p 8042:8042 -e WVB_ENABLED=true osimis/orthanc
2nd command - Start Orthanc with mount directory tasks
docker run -p 4242:4242 -p 8042:8042 --rm --name orthanc -v
$(pwd)/orthanc/orthanc.json:/etc/orthanc/orthanc.json -v
$(pwd)/orthanc/orthanc-db:/var/lib/orthanc/db jodogne/orthanc-plugins
/etc/orthanc --verbose
As you can see, in both the cases the Orthanc is being started but I would like to merge these into one and start Orthanc. When it is started Web viewer should also be enabled and mount directory should also have happened
Can you let me know on how can this be done?

Use docker-compose, it is specially targeted for running multiple containers.
docker-compose.yml
version: '3'
services:
osimis:
image: osimis/orthanc
environment:
WVB_ENABLED: 'true'
ports:
- 8042:8042
orthanc:
image: jodogne/orthanc-plugins
environment:
WVB_ENABLED: 'true'
ports:
- 4242:4242
- 8042:8042
volumes:
- ./orthanc/orthanc.json:/etc/orthanc/orthanc.json
- ./orthanc/orthanc-db:/var/lib/orthanc/db
command: /etc/orthanc --verbose
and docker-compose up to finish the work

Related

How do I convert docker-compose configuration to dockerfile

I am a bit confused I was trying to convert dockercompose of elastic kibana to dockerfile. But networking part and connectivity part is bit confusing for me. Can anyone help me with conversion and a bit of explanation.
Thanks a lot!
version: "3.0"
services:
elasticsearch:
container_name: es-container
image: docker.elastic.co/elasticsearch/elasticsearch:6.5.4
environment:
- xpack.security.enabled=true
- "discovery.type=single-node"
networks:
- es-net
ports:
- 9200:9200
kibana:
container_name: kb-container
image: docker.elastic.co/kibana/kibana:6.5.4
environment:
- ELASTICSEARCH_HOSTS=http://es-container:9200
networks:
- es-net
depends_on:
- elasticsearch
ports:
- 5601:5601
networks:
es-net:
driver: bridge
Docker Compose and Dockerfiles are completely different things. The Dockerfile is a configuration file used to create Docker images. The docker-compose.yml file is a configuration file used by Docker Compose to launch Docker containers using Docker images.
To launch the above containers without using Docker Compose you could run:
docker network create es-net
docker run -d -e xpack.security.enabled=true -e "discovery.type=single-node" -p 9200:9200 --network es-net --name es-container docker.elastic.co/elasticsearch/elasticsearch:6.5.4
docker run -d -e ELASTICSEARCH_HOSTS=http://es-container:9200 -p 5601:5601 --network es-net --name kb-container docker.elastic.co/kibana/kibana:6.5.4
Alternatively, you could run the containers on the hosts network stack (rather than the es-net nework). Kibana would then be able to talk to ElasticSearch on localhost:
docker run -d -e xpack.security.enabled=true -e "discovery.type=single-node" --network host --name es-container docker.elastic.co/elasticsearch/elasticsearch:6.5.4
docker run -d -e ELASTICSEARCH_HOSTS=http://localhost:9200 --network host --name kb-container docker.elastic.co/kibana/kibana:6.5.4
(I haven't actually run these so the commands might need some tweaking).
In that docker-compose.yml file, the only thing that could be built into an image at all are the environment variables, and there's not much benefit to hard-coding your deployment configuration like this. In particular you cannot force the eventual container name or manually specify the eventual networking configuration in an image.
If you're looking for a compact self-contained description of what to run that you can redistribute, the docker-compose.yml is it. Don't try to send around images, or focus on trying to have a single container; instead, distribute the docker-compose.yml file as the way to run your application. I'd consider Compose a standard enough tool that anyone who has Docker already has it and knows how to run docker-compose up -d.
# How to run this application on a different system
# (with Docker and Compose preinstalled):
here$ scp docker-compose.yml there:
here$ ssh there
there$ sudo docker-compose up -d

How to set up alertmanager.service for running in docker container

I am running prometheus in a docker container, and I want to configure an AlertManager for making it send me an email when the service is down. I created the alert_rules.yml and the prometheus.yml, and I run everything with the following command, mounting both the yml files onto the docker container at the path /etc/prometheus:
docker run -d -p 9090:9090 --add-host host.docker.internal:host-gateway -v "$PWD/prometheus.yml":/etc/prometheus/prometheus.yml -v "$PWD/alert_rules.yml":/etc/prometheus/alert_rules.yml prom/prometheus
Now, I also want prometheus to send me an email when an alert comes up, and that's where I encounter some problems. I configured my alertmanager.yml as follows:
route:
group_by: ['alertname']
group_wait: 30s
group_interval: 5m
repeat_interval: 1h
receiver: email-me
receivers:
- name: 'gmail'
email_configs:
- to: 'my_email#gmail.com'
from: 'askonlinetraining#gmail.com'
smarthost: smtp.gmail.com:587
auth_username: 'my_email#gmail.com'
auth_identity: 'my_email#gmail.com'
auth_password: 'the_password'
I actually don't know if the smarthost parameter is configured correctly since I can't find any documentation about it and I don't know which values it should contain
I also created an alertmanager.service file:
[Unit]
Description=AlertManager Server Service
Wants=network-online.target
After=network-online.target
[Service]
User=root
Group=root
Type=Simple
ExecStart=/usr/local/bin/alertmanager \
--config.file /etc/alertmanager.yml
[Install]
WantedBy=multi-user.target
I think something here is messed up: I think the first parameter I pass to ExecStart is a path that doesn't exist in the container, but I have no idea on how I should replace it.
I tried mounting the last two files into the docker container in the same directory where I mount the first two yml files by using the following command:
docker run -d -p 9090:9090 --add-host host.docker.internal:host-gateway -v "$PWD/prometheus.yml":/etc/prometheus/prometheus.yml -v "$PWD/alert_rules.yml":/etc/prometheus/alert_rules.yml -v "$PWD/alertmanager.yml":/etc/prometheus/alertmanager.yml -v "$PWD/alertmanager.service":/etc/prometheus/alertmanager.service prom/prometheus
But the mailing alert is not working and I don't know how to fix the configuration for smoothly running all of this into a docker container. As I said, I suppose the main problem resides in the ExecStart command present in alertmanager.service, but maybe I'm wrong. I can't find anything helpful online, hence I would really appreciate some help
The best practice with containers is to aim to run a single process per container.
In your container, this suggests one container for prom/prometheus and another for prom/alertmanager.
You can run these using docker as:
docker run \
--detach \
--name=prometheus \
--volume=${PWD}:/prometheus.yml:/etc/prometheus/prometheus.yml \
--volume=${PWD}:/rules.yml:/etc/alertmanager/rules.yml \
--publish=9090:9090 \
prom/prometheus:v2.26.0 \
--config.file=/etc/prometheus/promtheus.yml
docker run \
--detach \
--name=alertmanager \
--volume=${PWD}:/rules.yml:/etc/alertmanager/rules.yml \
--publish=9093:9093 \
prom/alertmanager:v0.21.0
A good tool when you run multiple container is Docker Compose in which case, your docker-compose.yml could be:
version: "3"
services:
prometheus:
restart: always
image: prom/prometheus:v2.26.0
container_name: prometheus
command:
- --config.file=/etc/prometheus/prometheus.yml
volumes:
- ${PWD}/prometheus.yml:/etc/prometheus/prometheus.yml
- ${PWD}/rules.yml:/etc/alertmanager/rules.yml
expose:
- "9090"
ports:
- 9090:9090
alertmanager:
restart: always
depends_on:
- prometheus
image: prom/alertmanager:v0.21.0
container_name: alertmanager
volumes:
- ${PWD}/alertmanager.yml:/etc/alertmanager/alertmanager.yml
expose:
- "9093"
ports:
- 9093:9093
and you could:
docker-compose up
In either case, you can then browse:
Prometheus on the host's port 9090 i.e. localhost:9090
Alert Manager on the host's port 9093, i.e. localhost:9093

Cannot connect to the Docker daemon from within container

I run a container (cAdvisor) that needs to access the Docker Engine of the host.
When I run it as a service with the command line, everything works fine:
docker service create --name cadvisor
--network clusternetwork -p 8080:8080
--mount type=bind,src=/var/run/docker.sock,dst=/var/run/docker.sock,ro
--mount type=bind,src=/,dst=/rootfs,ro
--mount type=bind,src=/sys,dst=/sys,ro
--mount type=bind,src=/var/lib/docker,dst=/var/lib/docker,ro
gcr.io/google-containers/cadvisor:latest
But when I transpose the following service to a docker-compose file and run it using docker stack deploy -c myCadvisor-compose.yml cAdvisor, it doesn't work and I get the following error: failed to get docker info: Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?
Here is my docker-compose file. Did I forget to transpose something from the above service call?
version: "3.7"
services:
cadvisor:
image: gcr.io/google-containers/cadvisor:latest
ports:
- 8080:8080
volumes:
- /var/run/docker.sock:/var/run/docker.sock,ro
- /:/rootfs,ro
- /sys:/sys,ro
- /var/lib/docker:/var/lib/docker,ro
networks:
- clusternetwork
networks:
clusternetwork:
external: true
I have tested your code. The main issue is the "," you must put an":". RW or RO doesn't matter. In my case the working one looks like this:
volumes:
- /:/rootfs:ro
- /var/run/docker.sock:/var/run/docker.sock:rw
- /sys:/sys:ro
- /var/lib/docker/:/var/lib/docker:ro
Cheers Jules

Running Kudu in a docker and master to tserver two-way connection / circular link issues - docker composition

How can you run Kudu, which requires two containers - one for the master and one for the tserver under docker, when the two containers need to connect to each other by DNS.
Kudu can be run under Docker using the following commands:
docker run --name kudu-master --hostname kudu-master --detach --publish 8051:8051 --publish 7051:7051 kunickiaj/kudu master
and:
docker run --name kudu-tserver --hostname kudu-tserver --detach --publish 8050:8050 --publish 7050:7050 --link kudu-master --env KUDU_MASTER=kudu-master kunickiaj/kudu tserver
However, the above defines a one way link, from kudu-tserver to kudu-master and not vice verse.
For Kudu to function correctly, bother kudu-master and kudu-tserver need to be able to connect to each other.
How can the Docker containers be configured, so that the two way link works?
Docker image reference
Similar image reference
The link parameter in docker run is a legacy feature which may be removed (references [1] and [2]).
You can raise multiple Docker containers and connect them to each other using docker-compose.
To get this working, create a folder named kudu and place the following docker-compose.yml file under it:
version: '3'
services:
kudu-master:
image: "kunickiaj/kudu"
hostname: kudu-master
ports:
- "8051:8051"
- "7051:7051"
command:
master
networks:
kudu_network:
aliases:
- kudu-master
kudu-tserver:
image: "kunickiaj/kudu"
hostname: kudu-tserver
ports:
- "8050:8050"
- "7050:7050"
environment:
- KUDU_MASTER=kudu-master
command:
tserver
networks:
kudu_network:
aliases:
- kudu-tserver
networks:
kudu_network:
This file includes 2 services (kudu-master and kudu-tserver) and a network within which both have aliases which are visible to the rest of the network (to each other). [File reference]
Then run docker-compose using the following command line:
docker-compose -f "filePathToYourDockerComposeYmlFile" up -d
or, if you want to recreate the Docker containers:
docker-compose -f "filePathToYourDockerComposeYmlFile" up -d --force-recreate
Other useful commands [reference]:
To stop the containers:
docker-compose -f "filePathToYourDockerComposeYmlFile" stop
To remove the containers:
docker-compose -f "filePathToYourDockerComposeYmlFile" rm -f

Can I pass arguments into docker-compose the command config option

Anyone know how I can use the command: option in docker-compose to run my command with arguments? I know version 2 offers arguments, but that works with docker-engine 1.10.x I am on docker-engine 1.6.2 and cannot upgrade at the moment.
I want to do something like this in docker-compose:
...
rstudio:
image: rocker-hadleyverse
command: -d -p 8787:8787 -e USER=<username> -e PASSWORD=<password> rocker-hadleyverse
links:
- db
...
Please (re)read the docker-compose docs, in docker-compose.yml command refers to the actual command executed inside the container, not the options you pass to docker run. Your example translates to:
rstudio:
image: rocker-hadleyverse
ports:
- "8787:8787"
environment:
- USER=foo
- PASSWORD=bar
links:
- db
To detach after container start use docker-compose up -d.

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