Is there any way to exec into an initContainer in Kubernetes - docker

I have a init container in which I'm storing file but while running it's showing the file is not present.
Is there any way I can exec inside init container and check where the file is being stored.

Use kubectl describe <pod> to get the id of the initContainer you need to exec into then use kubectl exec -ti <pod> -c <container> sh to access its shell. You may need to add some kind of delay, like sleep to the initContainer to access it before it completes or fails.

Related

how to stop I/O log container in kubernetes

when i access docker container in GKE like kubectl exec -it [pod-name] bash -n seunghwan
i see lots of logs(I don't know what it is)
enter image description here
this container I accessed have nodejs application but i tried mysql server it looks same.
I am the only one can see these logs. others can't see these logs so I think this problem is from my local
if need more info please tell me thank you
when i access container in GKE there are no logs in bash terminal.
I managed to reproduce the issue by adding DEBUG=true before the exec command, such as:
DEBUG=true kubectl exec -it [pod-name] bash -n seunghwan
Try to set the DEBUG environment variable to false either at the beginning of your command or in your env var.
DEBUG=false kubectl exec -it [pod-name] bash -n seunghwan

How to view log files while using Memgraph with Docker?

I am using Memgraph with Docker and I want to access today's log files. What is the easiest way to do that?
To view the log files you first need to enter the Docker container where Memgraph is running. Then follow these steps:
Execute the command docker ps
to find the ID of the container, CONTAINER_ID.
Then, execute the command
docker exec -it CONTAINER_ID bash
Now you can use the command
cat /var/log/memgraph/memgraph_2022-03-03.log
to check today's log file.

How do I run a command line tool in a Rails app on a docker container?

so I have a working Rails project which is running in a docker container
I have a need to use this tool : https://github.com/google/oauth2l
I need to use this tool within my rails application, take it's output and use it in a post request I'm making via HTTParty.
I'm able to do this already but that's assuming I have oauth2l installed on my system. But since
I'm running my app in production in a container, I'm not sure what the best way to go about this is.
In the docs, there does seem to be a way to 'inject' it into my container but adding those lines to the Dockerfile is leading to syntax errors.
Any ideas on what I could do here?
As a general rule, I think you shouldn't run commands inside the docker container unless you really need it, the best approach is to install what you need while you are building your docker image (with only docker or docker-compose), but in case you really need to enter inside your container here is how I usually do it:
sudo -s
docker container ls (list all containers)
docker container -ti <id of the container> sh
or
docker exec -ti <id of the container> /bin/bash
The sudo -s sometimes is needed depending on how you configure the instance where your container is running, which means that all the commands you are running from now on are like admin. And you may need to execute sh or bash, again depending on your instance.
Hope that helps! 👍
Is better to type all the commands needed in the Dockerfile.
BUt, if you want to run a command within the container, try this:
docker exec -it my-app-web-1 rails db:create db:migrate
docker exec -it my-app-web-1 rails devise:install
These are some examples that you can do.

Having difficulties to attach an up state container?

I have created a docker container which is up and running in the background. I tried to attach the container in my terminal using the container id. It enters the container but I can't do anything in it. So, I have to exit every time using ctrl+c.
If the comment by Lawrence Cherone did not help you consider the following options:
If you want to invoke a command in a already running container, use docker exec.
You can exec into you container by it's name or id. This means you can run a command in a running container. See docs.docker.com: docker exec.
Example:
The docker exec command runs the command bash in a running container.
docker exec -it <container-id> bash
Note: This will really invoke a new command and do not attach to the currelty running command.
If you just want to get the putput of a container, you can use docker logs. Again you use your container name or id.
See docs.docker.com: docker logs
Example:
docker logs <container-id>

How to set an environment variable in a running docker container

If I have a docker container that I started a while back, what is the best way to set an environment variable in that running container? I set an environment variable initially when I ran the run command.
$ docker run --name my-wordpress -e VIRTUAL_HOST=domain.example --link my-mysql:mysql -d spencercooley/wordpress
but now that it has been running for a while I want to add another VIRTUAL_HOST to the environment variable. I do not want to delete the container and then just re-run it with the environment variable that I want because then I would have to migrate the old volumes to the new container, it has theme files and uploads in it that I don't want to lose.
I would just like to change the value of VIRTUAL_HOST environment variable.
There are generaly two options, because docker doesn't support this feature now:
Create your own script, which will act like runner for your command. For example:
#!/bin/bash
export VAR1=VAL1
export VAR2=VAL2
your_cmd
Run your command following way:
docker exec -i CONTAINER_ID /bin/bash -c "export VAR1=VAL1 && export VAR2=VAL2 && your_cmd"
Docker doesn't offer this feature.
There is an issue: "How to set an enviroment variable on an existing container? #8838"
Also from "Allow docker start to take environment variables #7561":
Right now Docker can't change the configuration of the container once it's created, and generally this is OK because it's trivial to create a new container.
For a somewhat narrow use case, docker issue 8838 mentions this sort-of-hack:
You just stop docker daemon and change container config in /var/lib/docker/containers/[container-id]/config.json (sic)
This solution updates the environment variables without the need to delete and re-run the container, having to migrate volumes and remembering parameters to run.
However, this requires a restart of the docker daemon. And, until issue issue 2658 is addressed, this includes a restart of all containers.
To:
set up many env. vars in one step,
prevent exposing them in 'sh' history, like with '-e' option (passing credentials/api tokens!),
you can use
--env-file key_value_file.txt
option:
docker run --env-file key_value_file.txt $INSTANCE_ID
Here's how you can modify a running container to update its environment variables. This assumes you're running on Linux. I tested it with Docker 19.03.8
Live Restore
First, ensure that your Docker daemon is set to leave containers running when it's shut down. Edit your /etc/docker/daemon.json, and add "live-restore": true as a top-level key.
sudo vim /etc/docker/daemon.json
My file looks like this:
{
"default-runtime": "nvidia",
"runtimes": {
"nvidia": {
"path": "nvidia-container-runtime",
"runtimeArgs": []
}
},
"live-restore": true
}
Taken from here.
Get the Container ID
Save the ID of the container you want to edit for easier access to the files.
export CONTAINER_ID=`docker inspect --format="{{.Id}}" <YOUR CONTAINER NAME>`
Edit Container Configuration
Edit the configuration file, go to the "Env" section, and add your key.
sudo vim /var/lib/docker/containers/$CONTAINER_ID/config.v2.json
My file looks like this:
...,"Env":["TEST=1",...
Stop and Start Docker
I found that restarting Docker didn't work, I had to stop and then start Docker with two separate commands.
sudo systemctl stop docker
sudo systemctl start docker
Because of live-restore, your containers should stay up.
Verify That It Worked
docker exec <YOUR CONTAINER NAME> bash -c 'echo $TEST'
Single quotes are important here.
You can also verify that the uptime of your container hasn't changed:
docker ps
You wrote that you do not want to migrate the old volumes. So I assume either the Dockerfile that you used to build the spencercooley/wordpress image has VOLUMEs defined or you specified them on command line with the -v switch.
You could simply start a new container which imports the volumes from the old one with the --volumes-from switch like:
$ docker run --name my-new-wordpress --volumes-from my-wordpress -e VIRTUAL_HOST=domain.com --link my-mysql:mysql -d spencercooley/wordpres
So you will have a fresh container but you do not loose the old data. You do not even need to touch or migrate it.
A well-done container is always stateless. That means its process is supposed to add or modify only files on defined volumes. That can be verified with a simple docker diff <containerId> after the container ran a while.
In that case it is not dangerous when you re-create the container with the same parameters (in your case slightly modified ones). Assuming you create it from exactly the same image from which the old one was created and you re-use the same volumes with the above mentioned switch.
After the new container has started successfully and you verified that everything runs correctly you can delete the old wordpress container. The old volumes are then referred from the new container and will not be deleted.
If you are running the container as a service using docker swarm, you can do:
docker service update --env-add <you environment variable> <service_name>
Also remove using --env-rm
To make sure it's addedd as you wanted, just run:
docker exec -it <container id> env
1. Enter your running container:
sudo docker exec -it <container_name> /bin/bash
2. Run command to all available to user accessing the container and copy them to user running session that needs to run the commands:
printenv | grep -v "no_proxy" >> /etc/environment
3. Stop and Start the container
sudo docker stop <container_name>
sudo docker start <container_name>
Firstly you can set env inside the container the same way as you do on a linux box.
Secondly, you can do it by modifying the config file of your docker container (/var/lib/docker/containers/xxxx/config.v2.json). Note you need restart docker service to take affect. This way you can change some other things like port mapping etc.
here is how to update a docker container config permanently
stop container: docker stop <container name>
edit container config: docker run -it -v /var/lib/docker:/var/lib/docker alpine vi $(docker inspect --format='/var/lib/docker/containers/{{.Id}}/config.v2.json' <container name>)
restart docker
I solve this problem with docker commit after some modifications in the base container, we only need to tag the new image and start that one
docs.docker.com/engine/reference/commandline/commit
docker commit [container-id] [tag]
docker commit b0e71de98cb9 stack-overflow:0.0.1
then you can pass environment vars or file
docker run --env AWS_ACCESS_KEY_ID --env AWS_SECRET_ACCESS_KEY --env AWS_SESSION_TOKEN --env-file env.local -p 8093:8093 stack-overflow:0.0.1
the quick working hack would be:
get into the running container.
docker exec -it <container_name> bash
set env variable,
install vim if not installed in the container
apt-get install vim
vi ~/.profile at the end of the file add export MAPPING_FILENAME=p_07302021
source ~/.profile
check whether it has been set! echo $MAPPING_FILENAME(make sure you should come out of the container.)
Now, you can run whatever you're running outside of the container from inside the container.
Note, in case you're worried that you might lose your work if the current session you logged in gets logged off. you can always use screen even before starting step 1. That way if you logged off by chance of your inside running container session, you can log back in.
After understand that docker run an image constructed with a dockerfile , and the only way to change it is build another image stop everything and run everything again .
So the easy way to "set an environment variable in a running docker container" is read dockerfile [1] (with docker inspect) understand how docker starts [1].
In the example [1] we can see that docker start with /usr/local/bin/docker-php-entrypoint and we could edit it with vi and add one line with export myvar=myvalue since /usr/local/bin/docker-php-entrypoint Posix script .
If you can change dockerfile, you can add a call to a script [2] for example /usr/local/bin/mystart.sh and in that file we can set your environment var.
Of course after change the scripts you need restart the container [3]
[1]
$ docker inspect 011aa33ba92b
[{
. . .
"ContainerConfig": {
"Cmd": [
"php-fpm"
],
"WorkingDir": "/app",
"Entrypoint": [
"docker-php-entrypoint"
],
. . .
}]
[2]
/usr/local/bin/mystart.sh
#!/bin/bash
export VAR1=VAL1
export VAR2=VAL2
your_cmd
[3]
docker restart dev-php (container name)
Hack with editing docker inner configs and then restarting docker daemon was unsuitable for my case.
There is a way to recreate container with new environment settings and use it for some time.
1. Create new image from runnning container:
docker commit my-service
a1b2c3d4e5f6032165497
Docker created new image, and answered with its id. Note, the image doesn't include mounts and networks.
2. Stop and rename original container:
docker stop my-service
docker rename my-service my-service-original
3. Create and start new container with modified environment:
docker run \
-it --rm \
--name my-service \
--network=required-network \
--mount type=bind,source=/host/path,target=/inside/path,readonly \
--env 'MY_NEW_ENV_VAR=blablabla OLD_ENV=zzz' \
a1b2c3d4e5f6032165497
Here, I did the following:
created new temporary container from image built on step 1, that will show its output on terminal, will exit on Ctrl+C, and will be deleted after that
configured its mounts and networks
added my custom environment configuration
4. After you worked with temporary container, press Ctrl+C to stop and remove it, and then return old container back:
docker rename my-service-original my-service
docker start my-service
How to set environment variable in a running docker container as a development environment
Basically you can do like in normal linux, adding export MY_VAR="value" to ~/.bashrc file.
Instructions
Using VScode attach to your running container
Then with VScode open the ~/.bashrc file
Export your variable by adding the code in the end of the file
export MY_VAR="value"
Finally execute .bashrc using source command
source ~/.bashrc
You could set an environment variable to a running Docker container by
docker exec -it -e "your environment Key"="your new value" <container> /bin/bash
Verify it using below command
printenv
This will update your key with the new value provided.
Note: This will get reverted back to old on if docker gets restarted.
Use export VAR=Value
Then type printenv in terminal to validate it is set correctly.

Resources