While loading data in to Neo4j, I am getting this below error and neo4j is not working properly. My memory configuration is - dbms.memory.pagecache.size=10G dbms.memory.heap.initial_size=10G dbms.memory.heap.max_size=30G $ulimit -n --> 50000 Please help me to fix this issue.
Background: We have developed talend etl jobs to fetch data from Postgres tables and load into Graph neo4j database. During execution of this jobs the neo4j gives below error and not working properly. Also, it claims to restart the neo4j application.
Can someone face this issue and help me out on this?
2019-03-13 03:55:34.312+0000 ERROR Failed to start transaction. The database has encountered a critical error, and needs to be restarted. Please see database logs for more details.
org.neo4j.graphdb.TransactionFailureException: The database has encountered a critical error, and needs to be restarted. Please see database logs for more details.
at org.neo4j.kernel.impl.factory.ClassicCoreSPI.beginTransaction(ClassicCoreSPI.java:198)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacade.beginTransactionInternal(GraphDatabaseFacade.java:610)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacade.beginTransaction(GraphDatabaseFacade.java:405)
at org.neo4j.server.rest.transactional.TransitionalTxManagementKernelTransaction.startTransaction(TransitionalTxManagementKernelTransaction.java:123)
at org.neo4j.server.rest.transactional.TransitionalTxManagementKernelTransaction.<init>(TransitionalTxManagementKernelTransaction.java:51)
at org.neo4j.server.rest.transactional.TransitionalPeriodTransactionMessContainer.newTransaction(TransitionalPeriodTransactionMessContainer.java:55)
at org.neo4j.server.rest.transactional.TransactionHandle.ensureActiveTransaction(TransactionHandle.java:213)
at org.neo4j.server.rest.transactional.TransactionHandle.commit(TransactionHandle.java:156)
at org.neo4j.server.rest.web.TransactionalService.lambda$executeStatementsAndCommit$1(TransactionalService.java:218)
at com.sun.jersey.core.impl.provider.entity.StreamingOutputProvider.writeTo(StreamingOutputProvider.java:71)
at com.sun.jersey.core.impl.provider.entity.StreamingOutputProvider.writeTo(StreamingOutputProvider.java:57)
at com.sun.jersey.spi.container.ContainerResponse.write(ContainerResponse.java:302)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1510)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1419)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1409)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:409)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:558)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:733)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:812)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at org.neo4j.server.rest.dbms.AuthorizationEnabledFilter.doFilter(AuthorizationEnabledFilter.java:123)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.neo4j.server.rest.web.CollectUserAgentFilter.doFilter(CollectUserAgentFilter.java:69)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:221)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.HandlerList.handle(HandlerList.java:52)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
at org.eclipse.jetty.server.Server.handle(Server.java:499)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:258)
at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.neo4j.kernel.api.exceptions.TransactionFailureException: The database has encountered a critical error, and needs to be restarted. Please see database logs for more details.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.neo4j.kernel.internal.DatabaseHealth.assertHealthy(DatabaseHealth.java:63)
at org.neo4j.kernel.impl.api.Kernel.newTransaction(Kernel.java:94)
at org.neo4j.kernel.impl.factory.ClassicCoreSPI.beginTransaction(ClassicCoreSPI.java:190)
... 40 more
Caused by: org.neo4j.kernel.impl.store.UnderlyingStorageException: Error performing check point
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.constructCombinedFailure(CheckPointScheduler.java:100)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:81)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
at org.neo4j.helpers.NamedThreadFactory$2.run(NamedThreadFactory.java:109)
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29701778, actual version: 29665951, wait timeout (ms): 600059
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29710329, actual version: 29665951, wait timeout (ms): 600046
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29725997, actual version: 29665951, wait timeout (ms): 600083
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29727712, actual version: 29665951, wait timeout (ms): 600045
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29729405, actual version: 29665951, wait timeout (ms): 600052
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Suppressed: org.neo4j.kernel.impl.store.kvstore.RotationTimeoutException: Failed to rotate logs. Expected version: 29730976, actual version: 29665951, wait timeout (ms): 600072
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:79)
at org.neo4j.kernel.impl.store.kvstore.RotationState$Rotation.rotate(RotationState.java:52)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:304)
at org.neo4j.kernel.impl.store.kvstore.AbstractKeyValueStore$RotationTask.rotate(AbstractKeyValueStore.java:281)
at org.neo4j.kernel.impl.store.counts.CountsTracker.rotate(CountsTracker.java:155)
at org.neo4j.kernel.impl.store.NeoStores.flush(NeoStores.java:242)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.flushAndForce(RecordStorageEngine.java:465)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.doCheckPoint(CheckPointerImpl.java:160)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointerImpl.checkPointIfNeeded(CheckPointerImpl.java:134)
at org.neo4j.kernel.impl.transaction.log.checkpoint.CheckPointScheduler$1.run(CheckPointScheduler.java:64)
... 8 more
Try deleting the neostore.counts.db.a/.b files. Neo4j will rebuild them if they are missing.
Can you please do the following (based on engineering feedback)
upgrade to a recent version (like 3.5.3)
check and possibly reduce your transaction batch sizes of your import jobs
check the log for other errors that occur before these errors and also share them
Related
We keep getting the following exception on CircleCI while building out project. Everything runs well when running the job from the CircleCI CLI. Has anyone found a fix / resolution for this?
Compilation with Kotlin compile daemon was not successful
java.rmi.UnmarshalException: Error unmarshaling return header; nested exception is:
java.io.EOFException
at sun.rmi.transport.StreamRemoteCall.executeCall(StreamRemoteCall.java:236)
at sun.rmi.server.UnicastRef.invoke(UnicastRef.java:161)
at java.rmi.server.RemoteObjectInvocationHandler.invokeRemoteMethod(RemoteObjectInvocationHandler.java:227)
at java.rmi.server.RemoteObjectInvocationHandler.invoke(RemoteObjectInvocationHandler.java:179)
at com.sun.proxy.$Proxy104.compile(Unknown Source)
at org.jetbrains.kotlin.compilerRunner.GradleKotlinCompilerWork.incrementalCompilationWithDaemon(GradleKotlinCompilerWork.kt:284)
at org.jetbrains.kotlin.compilerRunner.GradleKotlinCompilerWork.compileWithDaemon(GradleKotlinCompilerWork.kt:198)
at org.jetbrains.kotlin.compilerRunner.GradleKotlinCompilerWork.compileWithDaemonOrFallbackImpl(GradleKotlinCompilerWork.kt:141)
at org.jetbrains.kotlin.compilerRunner.GradleKotlinCompilerWork.run(GradleKotlinCompilerWork.kt:118)
at org.jetbrains.kotlin.compilerRunner.GradleCompilerRunner.runCompilerAsync(GradleKotlinCompilerRunner.kt:158)
at org.jetbrains.kotlin.compilerRunner.GradleCompilerRunner.runCompilerAsync(GradleKotlinCompilerRunner.kt:153)
at org.jetbrains.kotlin.compilerRunner.GradleCompilerRunner.runJvmCompilerAsync(GradleKotlinCompilerRunner.kt:92)
at org.jetbrains.kotlin.gradle.tasks.KotlinCompile.callCompilerAsync$kotlin_gradle_plugin(Tasks.kt:447)
at org.jetbrains.kotlin.gradle.tasks.KotlinCompile.callCompilerAsync$kotlin_gradle_plugin(Tasks.kt:355)
at org.jetbrains.kotlin.gradle.tasks.AbstractKotlinCompile.executeImpl(Tasks.kt:312)
at org.jetbrains.kotlin.gradle.tasks.AbstractKotlinCompile.execute(Tasks.kt:284)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:103)
at org.gradle.api.internal.project.taskfactory.IncrementalTaskInputsTaskAction.doExecute(IncrementalTaskInputsTaskAction.java:46)
at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:41)
at org.gradle.api.internal.project.taskfactory.AbstractIncrementalTaskAction.execute(AbstractIncrementalTaskAction.java:25)
at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$5.run(ExecuteActionsTaskExecuter.java:404)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:393)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:376)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$200(ExecuteActionsTaskExecuter.java:80)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:213)
at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$0(ExecuteStep.java:32)
at java.util.Optional.map(Optional.java:215)
at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:32)
at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:58)
at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:35)
at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:48)
at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:33)
at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:39)
at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:35)
at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:51)
at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:45)
at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:31)
at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:201)
at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:70)
at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:45)
at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
at org.gradle.internal.execution.steps.StoreSnapshotsStep.execute(StoreSnapshotsStep.java:43)
at org.gradle.internal.execution.steps.StoreSnapshotsStep.execute(StoreSnapshotsStep.java:32)
at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:96)
at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:89)
at java.util.Optional.map(Optional.java:215)
at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:54)
at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:38)
at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:77)
at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:90)
at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:48)
at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:120)
at org.gradle.api.internal.tasks.execution.ResolveBeforeExecutionStateTaskExecuter.execute(ResolveBeforeExecutionStateTaskExecuter.java:75)
at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:62)
at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:108)
at org.gradle.api.internal.tasks.execution.ResolveBeforeExecutionOutputsTaskExecuter.execute(ResolveBeforeExecutionOutputsTaskExecuter.java:67)
at org.gradle.api.internal.tasks.execution.ResolveAfterPreviousExecutionStateTaskExecuter.execute(ResolveAfterPreviousExecutionStateTaskExecuter.java:46)
at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:94)
at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:95)
at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:73)
at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:49)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:49)
at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:43)
at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:355)
at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:343)
at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:336)
at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:322)
at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker$1.execute(DefaultPlanExecutor.java:134)
at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker$1.execute(DefaultPlanExecutor.java:129)
at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:202)
at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:193)
at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:129)
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.io.EOFException
at java.io.DataInputStream.readByte(DataInputStream.java:267)
at sun.rmi.transport.StreamRemoteCall.executeCall(StreamRemoteCall.java:222)
... 110 more
Unable to clear jar cache after compilation, maybe daemon is already down: java.rmi.ConnectException: Connection refused to host: 127.0.0.1; nested exception is:
java.net.ConnectException: Connection refused (Connection refused)
Could not connect to kotlin daemon. Using fallback strategy.
This configuration got rid of the issue:
Changing from JVM_OPTS: -Xmx3200m to JVM_OPTS: -Xmx2048m was important
version: 2
executors:
my-executor:
docker:
- image: circleci/android:api-28-node
working_directory: ~/code
environment:
JVM_OPTS: -Xmx2048m
GRADLE_OPTS: -Xmx1536m -XX:+HeapDumpOnOutOfMemoryError -Dorg.gradle.caching=true -Dorg.gradle.configureondemand=true -Dkotlin.compiler.execution.strategy=in-process -Dkotlin.incremental=false
I meet the same problem.
And finally, I delete my gradle cache folder (linux: ~/.gradle), and this problem disappear.
You can try and kill gradle daemon first.
update: I found the reason is disable gradle daemon can solve this problem. add org.gradle.daemon=false to gradle.properties
update2: sorry, everyone, the reason this memory too low on my ECS (1 cpu, 1G memory), I add 1G swap and this problem disppear.
Yes, we also faced the same issue, increased the memory in jenkins cloud configuration, which fixed the issue.
We want to post code coverage status comment to GitHub pull request. We configured our jenkins job with "Publish coverage to gitHub" plugin. But our build got failed with error ERROR: Step ‘Publish coverage to GitHub’ aborted due to exception:
java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:668)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:432)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:527)
at sun.net.www.protocol.https.HttpsClient.<init>(HttpsClient.java:264)
at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1105)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:999)
at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1513)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1441)
at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:480)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(HttpsURLConnectionImpl.java:338)
at org.kohsuke.github.Requester.parse(Requester.java:602)
Caused: org.kohsuke.github.HttpException: Server returned HTTP response code: -1, message: 'null' for URL: https://api.github.com/rate_limit
at org.kohsuke.github.Requester.parse(Requester.java:633)
at org.kohsuke.github.Requester.parse(Requester.java:594)
at org.kohsuke.github.Requester._to(Requester.java:272)
at org.kohsuke.github.Requester.to(Requester.java:234)
at org.kohsuke.github.GitHub.getRateLimit(GitHub.java:318)
at com.github.terma.jenkins.githubprcoveragestatus.GitHubPullRequestRepository.getGitHubRepository(GitHubPullRequestRepository.java:42)
Caused: java.io.IOException: Error while accessing rate limit API
at com.github.terma.jenkins.githubprcoveragestatus.GitHubPullRequestRepository.getGitHubRepository(GitHubPullRequestRepository.java:48)
at com.github.terma.jenkins.githubprcoveragestatus.CompareCoverageAction.perform(CompareCoverageAction.java:137)
at hudson.tasks.BuildStepCompatibilityLayer.perform(BuildStepCompatibilityLayer.java:81)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:744)
at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:690)
at hudson.model.Build$BuildExecution.post2(Build.java:186)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:635)
at hudson.model.Run.execute(Run.java:1749)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:421)
The main error seems to be:
Error while accessing rate limit API at
com.github.terma.jenkins.githubprcoveragestatus.GitHubPullRequestRepository.getGitHubRepository
That looks similar to jenkinsci/ghprb-plugin/issues/204
I've found the reason for the problem, it appears I misconfigured the secret key. After fixing that and waiting for the next period of rate limiting it works as expected.
Although I solved my problem, ideally the plugin would stop sending API requests when either the rate limit or unauthorised status code is received with the appropriate log messaging.
i can reach neo4j server from localhost and run queries successfully but i can't run query from remote computer. On remote computer i can access neo4j from browser. http://x.x.x.x:7474 drives me to neo4j web interface. But when i execute a query from spring it gives permision denied error.Query is simple:
User u = new User();
u.setName("test");
session.save(u);
ogm.properties:
driver=org.neo4j.ogm.drivers.http.driver.HttpDriver
URI=http://neo4j:1234#x.x.x.x:7474
full stack trace is:
2016-04-25 17:37:31.531 INFO 6040 --- [tp2116224318-27] o.n.o.drivers.http.request.HttpRequest : Thread 27: request {"statements":[{"statement":"UNWIND {rows} as row CREATE (n:`User`) SET n=row.props RETURN row.nodeRef as nodeRef, ID(n) as nodeId","parameters":{"rows":[{"nodeRef":-83203329,"props":{"name":"test"}}]},"resultDataContents":["row"],"includeStats":false}]}
2016-04-25 17:37:31.531 INFO 6040 --- [tp2116224318-27] o.n.o.drivers.http.request.HttpRequest : Thread 27: POST http://neo4j:1234#x.x.x.x:7474/db/data/transaction/commit HTTP/1.1
2016-04-25 17:37:31.533 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : I/O exception (java.net.SocketException) caught when processing request to {}->http://x.x.x.x:7474: Permission denied: connect
2016-04-25 17:37:31.534 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : Retrying request to {}->http://x.x.x.x:7474
2016-04-25 17:37:31.535 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : I/O exception (java.net.SocketException) caught when processing request to {}->http://x.x.x.x:7474: Permission denied: connect
2016-04-25 17:37:31.535 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : Retrying request to {}->http://x.x.x.x:7474
2016-04-25 17:37:31.537 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : I/O exception (java.net.SocketException) caught when processing request to {}->http://x.x.x.x:7474: Permission denied: connect
2016-04-25 17:37:31.537 INFO 6040 --- [tp2116224318-27] o.apache.http.impl.execchain.RetryExec : Retrying request to {}->http://x.x.x.x:7474
2016-04-25 17:37:31.538 WARN 6040 --- [tp2116224318-27] o.n.o.drivers.http.request.HttpRequest : Thread 27: Caught IOException : Permission denied: connect
2016-04-25 17:37:31.543 WARN 6040 --- [tp2116224318-27] o.eclipse.jetty.servlet.ServletHandler :
org.springframework.web.util.NestedServletException: Request processing failed; nested exception is org.neo4j.ogm.exception.ResultProcessingException: Could not obtain new Transaction:
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:980) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:859) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:687) ~[javax.servlet-api-3.1.0.jar:3.1.0]
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:844) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) ~[javax.servlet-api-3.1.0.jar:3.1.0]
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:812) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.websocket.server.WebSocketUpgradeFilter.doFilter(WebSocketUpgradeFilter.java:224) ~[websocket-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:87) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) ~[jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585) [jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) [jetty-security-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) [jetty-servlet-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.Server.handle(Server.java:499) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) [jetty-server-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544) [jetty-io-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) [jetty-util-9.2.15.v20160210.jar:9.2.15.v20160210]
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) [jetty-util-9.2.15.v20160210.jar:9.2.15.v20160210]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_66]
Caused by: org.neo4j.ogm.exception.ResultProcessingException: Could not obtain new Transaction:
at org.neo4j.ogm.drivers.http.driver.HttpDriver.newTransactionUrl(HttpDriver.java:138) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
at org.neo4j.ogm.drivers.http.driver.HttpDriver.newTransaction(HttpDriver.java:87) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
at org.neo4j.ogm.session.transaction.DefaultTransactionManager.openTransaction(DefaultTransactionManager.java:57) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.delegates.TransactionsDelegate.beginTransaction(TransactionsDelegate.java:37) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.Neo4jSession.beginTransaction(Neo4jSession.java:380) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.request.RequestExecutor.executeSave(RequestExecutor.java:68) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.delegates.SaveDelegate.save(SaveDelegate.java:70) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.delegates.SaveDelegate.save(SaveDelegate.java:43) ~[neo4j-ogm-core-2.0.1.jar:na]
at org.neo4j.ogm.session.Neo4jSession.save(Neo4jSession.java:364) ~[neo4j-ogm-core-2.0.1.jar:na]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_66]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_66]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_66]
at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_66]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208) ~[spring-aop-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at com.sun.proxy.$Proxy63.save(Unknown Source) ~[na:na]
at com.rest.controller.HomeController.index(HomeController.java:56) ~[bin/:na]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_66]
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_66]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_66]
at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_66]
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136) ~[spring-web-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:817) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:731) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:968) ~[spring-webmvc-4.2.5.RELEASE.jar:4.2.5.RELEASE]
... 37 common frames omitted
Caused by: org.neo4j.ogm.exception.ResultProcessingException: Failed to execute request:
at org.neo4j.ogm.drivers.http.driver.HttpDriver.executeHttpRequest(HttpDriver.java:119) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
at org.neo4j.ogm.drivers.http.driver.HttpDriver.newTransactionUrl(HttpDriver.java:133) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
... 71 common frames omitted
Caused by: org.neo4j.ogm.exception.ConnectionException: Error connecting to remote graph over HTTP
at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:261) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
at org.neo4j.ogm.drivers.http.driver.HttpDriver.executeHttpRequest(HttpDriver.java:94) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
... 72 common frames omitted
Caused by: java.net.SocketException: Permission denied: connect
at java.net.DualStackPlainSocketImpl.connect0(Native Method) ~[na:1.8.0_66]
at java.net.DualStackPlainSocketImpl.socketConnect(DualStackPlainSocketImpl.java:79) ~[na:1.8.0_66]
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) ~[na:1.8.0_66]
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) ~[na:1.8.0_66]
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) ~[na:1.8.0_66]
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:172) ~[na:1.8.0_66]
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) ~[na:1.8.0_66]
at java.net.Socket.connect(Socket.java:589) ~[na:1.8.0_66]
at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:134) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82) ~[httpclient-4.5.1.jar:4.5.1]
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107) ~[httpclient-4.5.1.jar:4.5.1]
at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:227) ~[neo4j-ogm-http-driver-2.0.1.jar:na]
... 73 common frames omitted
neo4j-server.properties
#***************************************************************
# Server configuration
#***************************************************************
# Require (or disable the requirement of) auth to access Neo4j
dbms.security.auth_enabled=true
dbms.security.allow_outgoing_browser_connections=true
#
# HTTP Connector
#
# http port (for all data, administrative, and UI access)
org.neo4j.server.webserver.port=7474
# Let the webserver only listen on the specified IP. Default is localhost (only
# accept local connections). Uncomment to allow any connection. Please see the
# security section in the neo4j manual before modifying this.
org.neo4j.server.webserver.address=0.0.0.0
#
# HTTPS Connector
#
# Turn https-support on/off
#org.neo4j.server.webserver.https.enabled=true
# https port (for all data, administrative, and UI access)
#org.neo4j.server.webserver.https.port=7473
# Certificate location (auto generated if the file does not exist)
#dbms.security.tls_certificate_file=conf/ssl/snakeoil.cert
# Private key location (auto generated if the file does not exist)
#dbms.security.tls_key_file=conf/ssl/snakeoil.key
# Internally generated keystore (don't try to put your own
# keystore there, it will get deleted when the server starts)
#org.neo4j.server.webserver.https.keystore.location=data/keystore
#*****************************************************************
# Administration client configuration
#*****************************************************************
# Comma separated list of JAX-RS packages containing JAX-RS resources, one
# package name for each mountpoint. The listed package names will be loaded
# under the mountpoints specified. Uncomment this line to mount the
# org.neo4j.examples.server.unmanaged.HelloWorldResource.java from
# neo4j-examples under /examples/unmanaged, resulting in a final URL of
# http://localhost:${org.neo4j.webserver.port}/examples/unmanaged/helloworld/{nodeId}
#org.neo4j.server.thirdparty_jaxrs_classes=org.neo4j.examples.server.unmanaged=/examples/unmanaged
#*****************************************************************
# HTTP logging configuration
#*****************************************************************
# HTTP logging is disabled. HTTP logging can be enabled by setting this
# property to 'true'.
org.neo4j.server.http.log.enabled=true
# Logging policy file that governs how HTTP log output is presented and
# archived. Note: changing the rollover and retention policy is sensible, but
# changing the output format is less so, since it is configured to use the
# ubiquitous common log format
org.neo4j.server.http.log.config=D:/neo4jdata/neo4j-http-logging.xml
dbms.querylog.filename=D:/neo4jdata/queries.log
I don't think this is a 'neo4j' issue. This looks more like firewall related exception because a java.net.SocketException: Permission denied: connect which probably means there is a firewall blocking your request for port 7474. Yes I know you can connect fine from your browser but neo4j/apache HttpClient are opening java.net sockets internally and it is being blocked. Other users have had similar issues with java.net sockets depending on firewall settings, java version used, OS version, etc...
Try to open a direct connection using java.net socket to http://x.x.x.x:7474 or using Apache HttpClient and see if you still get the same exception. That should tell you whether or not spring data neo4j lib is the cause.
See these question/answers to trouble shoot further:
Random UnreachableBrowserException when running Selenium tests
Also see:
http://jonathangiles.net/blog/?p=1126
I use neo4j-community-2.0.1-unix.tar.gz:
I delete old data in the database:
t#konrad:~/neo4j$ rm -rf ./data/
I start the application:
t#konrad:~/neo4j$ ./bin/neo4j console
: Max 1024 open files allowed, minimum of 40 000 recommended. See the
Neo4j manual. Starting Neo4j Server console-mode...
/home/triptop/neo4j/data/log was missing, recreating... Using
additional JVM arguments: -server -XX:+DisableExplicitGC
-Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled 2014-04-02 10:10:01.149+0000 INFO [API] Setting startup timeout to: 120000ms
based on -1 2014-04-02 10:12:29.005+0000 ERROR [org.neo4j]: Exception
when stopping
org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8
java.nio.channels.ClosedByInterruptException
java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.037+0000 ERROR [org.neo4j]: Exception when stopping
org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f
Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.057+0000 ERROR [org.neo4j]: Lifecycle exception Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 11 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.080+0000 ERROR [org.neo4j]: Chained lifecycle exception Component
'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception. org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.lucene.LuceneKernelExtension#287c20ab' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:118)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 10 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.impl.lucene.LuceneDataSource#2f4c076f' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:411)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:324)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 13 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:302)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:225)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 18 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 21 more 2014-04-02 10:12:29.141+0000 DEBUG [API] Failed to start database. 2014-04-02 10:12:29.144+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than
120000ms, and was stopped. You can disable this behavior by setting
'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:211)
~[neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-2.0.1.jar:2.0.1] 2014-04-02 10:12:29.180+0000 DEBUG
[API] Failed to start Neo Server on port [7478]
Any ideas why this may happen?
My java is:
$ java -version
java version "1.7.0_51"
Java(TM) SE Runtime Environment (build 1.7.0_51-b13)
Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode)
Your system only allow 1024 open files. Read the first line of your startup message:
Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual
see http://docs.neo4j.org/chunked/stable/linux-performance-guide.html#_setting_the_number_of_open_files for details.
I installed neo4j 2.0.0 M06 version on my Ubuntu pc. It service worked fine, and I could use the new web browser perfectly.
Then, I used the sample java project (https://github.com/neo4j/neo4j/blob/2.0.0-M06/community/embedded-examples/src/main/java/org/neo4j/examples/EmbeddedNeo4jWithIndexing.java) to connect embedded way to the DB and add some nodes. (btw, I'm sure I stopped the neo4j service before launching the java application)
I changed the number of nodes added by the program to 100,000, and the application crashed on exceeding heap size (GC overhead limit).
Now, when trying to launch the neo4j I get a startup error :
2013-11-01 09:53:13.806+0000 DEBUG [API] Failed to start Neo Server on port [7474]
2013-11-01 10:00:52.865+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
2013-11-01 10:00:52.998+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Starting Neo4j Server failed: org/neo4j/helpers /Settings
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:193) ~[neo4j- server-2.0.0-M06.jar:2.0.0-M06]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-2.0.0- M06.jar:2.0.0-M06]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-2.0.0- M06.jar:2.0.0-M06]
Caused by: java.lang.NoClassDefFoundError: org/neo4j/helpers/Settings
at org.neo4j.shell.ShellSettings.<clinit>(ShellSettings.java:42) ~[neo4j-shell- 2.0.0-M06.jar:2.0.0-M06]
at org.neo4j.server.database.CommunityDatabase.getDbTuningPropertiesWithServerDefaults(Communit yDatabase.java:106) ~[neo4j-server-2.0.0-M06.jar:2.0.0-M06]
at org.neo4j.server.enterprise.EnterpriseDatabase.start(EnterpriseDatabase.java:89) ~[neo4j-server-enterprise-2.0.0-M06.jar:2.0.0-M06]
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:141) ~[neo4j- server-2.0.0-M06.jar:2.0.0-M06]
... 2 common frames omitted
Caused by: java.lang.ClassNotFoundException: org.neo4j.helpers.Settings
at java.net.URLClassLoader$1.run(URLClassLoader.java:366) ~[na:1.7.0_45]
at java.net.URLClassLoader$1.run(URLClassLoader.java:355) ~[na:1.7.0_45]
at java.security.AccessController.doPrivileged(Native Method) ~[na:1.7.0_45]
at java.net.URLClassLoader.findClass(URLClassLoader.java:354) ~[na:1.7.0_45]
at java.lang.ClassLoader.loadClass(ClassLoader.java:425) ~[na:1.7.0_45]
at java.lang.ClassLoader.loadClass(ClassLoader.java:358) ~[na:1.7.0_45]
... 6 common frames omitted
2013-11-01 10:00:53.000+0000 DEBUG [API] Failed to start Neo Server on port [7474]
I found the problem with the jar files. Unfortunately, after solving the jar files problem, I had to reinstall neo4j for the service to work again