neo4j: Database failed to start: DB
I installed Neo4j Destop 1.1.8 in window10 but could not start the database, including I could not access the page. localhost: 7474, browser Notify that this site can not be accessed.
I have installed Zulu and java 8.
Screen says
Database failed to start: DB [database-*****-****-***-*****-*******] 'v3.4.6' exited with status 'KILLED'. Check the logs
And here are my logs.
2018-08-25 08:45:11.051+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2f17e30d' was successfully initialized, but failed to start. Please see the attached cause exception "Parse Generalized time, invalid format". Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2f17e30d' was successfully initialized, but failed to start. Please see the attached cause exception "Parse Generalized time, invalid format".
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2f17e30d' was successfully initialized, but failed to start. Please see the attached cause exception "Parse Generalized time, invalid format".
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:220)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at com.neo4j.server.enterprise.CommercialEntryPoint.main(CommercialEntryPoint.java:22)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2f17e30d' was successfully initialized, but failed to start. Please see the attached cause exception "Parse Generalized time, invalid format".
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:212)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, C:\Users\Sarandar\.Neo4jDesktop\neo4jDatabases\database-3d6b2a11-4a4c-4be3-9270-cbe4e3e639f0\installation-3.4.6\data\databases\graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:212)
at org.neo4j.kernel.enterprise.EnterpriseGraphDatabase.<init>(EnterpriseGraphDatabase.java:39)
at org.neo4j.server.enterprise.OpenEnterpriseNeoServer.lambda$static$1(OpenEnterpriseNeoServer.java:78)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#2dd80673' failed to initialize. Please see the attached cause exception "Parse Generalized time, invalid format".
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:427)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:208)
... 9 more
Caused by: java.lang.RuntimeException: Failed to initialize SSL encryption support, which is required to start this connector. Error was: Failed to load public certificate chain: C:\Users\Sarandar\.Neo4jDesktop\neo4jDatabases\database-3d6b2a11-4a4c-4be3-9270-cbe4e3e639f0\installation-3.4.6\certificates\neo4j.cert
at org.neo4j.bolt.BoltKernelExtension.createSslContext(BoltKernelExtension.java:243)
at org.neo4j.bolt.BoltKernelExtension.lambda$createConnectors$0(BoltKernelExtension.java:204)
at java.util.stream.Collectors.lambda$toMap$58(Collectors.java:1321)
at java.util.stream.ReduceOps$3ReducingSink.accept(ReduceOps.java:169)
at java.util.ArrayList$ArrayListSpliterator.forEachRemaining(ArrayList.java:1374)
at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:481)
at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:471)
at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
at org.neo4j.bolt.BoltKernelExtension.createConnectors(BoltKernelExtension.java:188)
at org.neo4j.bolt.BoltKernelExtension.newInstance(BoltKernelExtension.java:165)
at org.neo4j.bolt.BoltKernelExtension.newInstance(BoltKernelExtension.java:84)
at org.neo4j.kernel.extension.KernelExtensions.newInstance(KernelExtensions.java:78)
at org.neo4j.kernel.extension.KernelExtensions.init(KernelExtensions.java:61)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406)
... 12 more
Caused by: java.lang.RuntimeException: Failed to load public certificate chain: C:\Users\Sarandar\.Neo4jDesktop\neo4jDatabases\database-3d6b2a11-4a4c-4be3-9270-cbe4e3e639f0\installation-3.4.6\certificates\neo4j.cert
at org.neo4j.kernel.configuration.ssl.SslPolicyLoader.loadCertificateChain(SslPolicyLoader.java:293)
at org.neo4j.kernel.configuration.ssl.SslPolicyLoader.loadOrCreateLegacyPolicy(SslPolicyLoader.java:161)
at org.neo4j.kernel.configuration.ssl.SslPolicyLoader.getOrCreateLegacyPolicy(SslPolicyLoader.java:137)
at org.neo4j.kernel.configuration.ssl.SslPolicyLoader.getPolicy(SslPolicyLoader.java:118)
at org.neo4j.bolt.BoltKernelExtension.createSslContext(BoltKernelExtension.java:238)
... 27 more
Caused by: java.security.cert.CertificateParsingException: java.io.IOException: Parse Generalized time, invalid format
at sun.security.x509.X509CertInfo.<init>(X509CertInfo.java:169)
at sun.security.x509.X509CertImpl.parse(X509CertImpl.java:1804)
at sun.security.x509.X509CertImpl.<init>(X509CertImpl.java:195)
at sun.security.provider.X509Factory.parseX509orPKCS7Cert(X509Factory.java:471)
at sun.security.provider.X509Factory.engineGenerateCertificates(X509Factory.java:356)
at java.security.cert.CertificateFactory.generateCertificates(CertificateFactory.java:462)
at org.neo4j.ssl.PkiUtils.loadCertificates(PkiUtils.java:161)
at org.neo4j.kernel.configuration.ssl.SslPolicyLoader.loadCertificateChain(SslPolicyLoader.java:289)
... 31 more
Caused by: java.io.IOException: Parse Generalized time, invalid format
at sun.security.util.DerInputBuffer.getTime(DerInputBuffer.java:385)
at sun.security.util.DerInputBuffer.getGeneralizedTime(DerInputBuffer.java:271)
at sun.security.util.DerInputStream.getGeneralizedTime(DerInputStream.java:541)
at sun.security.x509.CertificateValidity.construct(CertificateValidity.java:96)
at sun.security.x509.CertificateValidity.<init>(CertificateValidity.java:128)
at sun.security.x509.X509CertInfo.parse(X509CertInfo.java:656)
at sun.security.x509.X509CertInfo.<init>(X509CertInfo.java:167)
... 38 more
How can I solve this problem? Thanks for the help.
Now I can solve the problem.
Just change my location computer to US
Related
I want to upgrade from 2.2.9 to 3.4.0. I have seen both .extension are different.V2.2.9 .graphdb but V3.4.0 .db also i'm getting error.
Is there an option available to upgrade to 3.4.0? Please advise.
2018-08-14 19:11:15.489+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#59a67c3a' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.5'". Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#59a67c3a' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.5'".
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#59a67c3a' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.5'".
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:220)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at com.neo4j.server.enterprise.CommercialEntryPoint.main(CommercialEntryPoint.java:22)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#59a67c3a' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.5'".
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:212)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, C:\Users\manickamv\.Neo4jDesktop\neo4jDatabases\database-10ce8a02-4af1-41bf-940c-b7ef6f48046f\installation-3.4.1\data\databases\graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:212)
at org.neo4j.kernel.enterprise.EnterpriseGraphDatabase.<init>(EnterpriseGraphDatabase.java:39)
at org.neo4j.server.enterprise.OpenEnterpriseNeoServer.lambda$static$1(OpenEnterpriseNeoServer.java:78)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.NeoStoreDataSource#2de366bb' was successfully initialized, but failed to start. Please see the attached cause exception "Unknown store version 'v0.A.5'".
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:100)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:208)
... 9 more
Caused by: java.lang.IllegalArgumentException: Unknown store version 'v0.A.5'
at org.neo4j.kernel.impl.store.format.RecordFormatSelector.selectForVersion(RecordFormatSelector.java:101)
at org.neo4j.kernel.impl.store.NeoStores.verifyRecordFormat(NeoStores.java:211)
at org.neo4j.kernel.impl.store.NeoStores.<init>(NeoStores.java:143)
at org.neo4j.kernel.impl.store.StoreFactory.openNeoStores(StoreFactory.java:160)
at org.neo4j.kernel.impl.store.StoreFactory.openAllNeoStores(StoreFactory.java:124)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.<init>(RecordStorageEngine.java:200)
at org.neo4j.kernel.NeoStoreDataSource.buildStorageEngine(NeoStoreDataSource.java:574)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:434)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 14 more
You need to upgrade in steps, Neo4j recommends you upgrade to the most up to date version of the current minor version, in your case, I would try upgrading to 2.3.12, then going to 3.2.12, then 3.4.5 - it's mainly as there have been a lot of changes since 2.2.x which need to be done in steps.
The Neo4J service is failing with following error log, please help.
We are trying to configure Neo4j in one of our Dev Server to do some POCs, but after installation the Neo4j service is failing with following error.
2018-03-21 10:34:17.935+0000 ERROR [o.n.k.i.DatabaseHealth] Database panic: The database has encountered a critical error, and needs to be restarted. Please see database logs for more details. Failed to apply transaction: null
org.neo4j.kernel.api.exceptions.TransactionApplyKernelException: Failed to apply transaction: null
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.apply(RecordStorageEngine.java:334)
at org.neo4j.kernel.recovery.DefaultRecoverySPI$RecoveryVisitor.visit(DefaultRecoverySPI.java:137)
at org.neo4j.kernel.recovery.DefaultRecoverySPI$RecoveryVisitor.visit(DefaultRecoverySPI.java:118)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:128)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:521)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:100)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:207)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:126)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:58)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:211)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at org.neo4j.server.BlockingBootstrapper.start(BlockingBootstrapper.java:41)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at org.neo4j.server.CommunityEntryPoint.start(CommunityEntryPoint.java:42)
Caused by: java.io.IOException: Failed to flush label updates
at org.neo4j.kernel.impl.transaction.command.IndexBatchTransactionApplier.applyPendingLabelAndIndexUpdates(IndexBatchTransactionApplier.java:116)
at org.neo4j.kernel.impl.transaction.command.IndexBatchTransactionApplier.close(IndexBatchTransactionApplier.java:124)
at org.neo4j.kernel.impl.api.BatchTransactionApplierFacade.close(BatchTransactionApplierFacade.java:70)
at org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.apply(RecordStorageEngine.java:331)
... 23 more
Caused by: java.util.concurrent.ExecutionException: org.neo4j.kernel.impl.store.UnderlyingStorageException: org.neo4j.index.internal.gbptree.TreeInconsistencyException: GSPP WRITE failure
Pointer state A: CRASH
Pointer state B: CRASH
Generations: A < B | GB+Tree[file:D:\NEO_HOME\data\databases\graph.db\neostore.labelscanstore.db, layout:LabelScanLayout[version:0.1, identifier:21483684112629824, keySize:10, valueSize:8], generation:7/9]
at org.neo4j.concurrent.WorkSync.checkFailure(WorkSync.java:182)
at org.neo4j.concurrent.WorkSync.access$100(WorkSync.java:49)
at org.neo4j.concurrent.WorkSync$1.await(WorkSync.java:132)
at org.neo4j.kernel.impl.transaction.command.IndexBatchTransactionApplier.applyPendingLabelAndIndexUpdates(IndexBatchTransactionApplier.java:112)
... 26 more
Thanks in advance.
I am currently unable to start a neo4j instance on a server where it was previously working. Neo4j produces an error saying one of the files is externally locked. From reading answers to similar questions I know this usually means another instance is currently using the store.
I have used lsof to look for any open files with 'neo' in their name but there are no open files.
I have used ps to look for any process with 'neo' or 'java' it it's name but no luck with that either.
I am not sure where to go from here to get neo4j working again. How do I figure out why this file is locked?
[site#x neo4j]$ neo4jstart-234.sh
[site#x neo4j]$ WARNING: Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual.
Starting Neo4j Server console-mode...
2017-07-20 10:37:51.073-0400 INFO Successfully shutdown Neo4j Server
2017-07-20 10:37:51.074-0400 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#79b877d2' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#79b877d2' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#79b877d2' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:67)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:235)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:97)
at org.neo4j.server.CommunityBootstrapper.start(CommunityBootstrapper.java:48)
at org.neo4j.server.CommunityBootstrapper.main(CommunityBootstrapper.java:35)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#79b877d2' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:462)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:111)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:195)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /scratch/neo4j/neo4j-community-2.3.4/data/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:143)
at org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:43)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108)
at org.neo4j.server.CommunityNeoServer$1.newGraphDatabase(CommunityNeoServer.java:66)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:95)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:452)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.NeoStoreDataSource#14c7f72f' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:462)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:111)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:112)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:452)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:111)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:139)
... 10 more
Caused by: org.neo4j.kernel.impl.store.UnderlyingStorageException: Unable to open store file: /scratch/neo4j/neo4j-community-2.3.4/data/graph.db/neostore.nodestore.db.labels
at org.neo4j.kernel.impl.store.CommonAbstractStore.checkStorage(CommonAbstractStore.java:161)
at org.neo4j.kernel.impl.store.CommonAbstractStore.initialise(CommonAbstractStore.java:102)
at org.neo4j.kernel.impl.store.NeoStores.initialize(NeoStores.java:429)
at org.neo4j.kernel.impl.store.NeoStores$StoreType$1.open(NeoStores.java:85)
at org.neo4j.kernel.impl.store.NeoStores$StoreType$1.open(NeoStores.java:78)
at org.neo4j.kernel.impl.store.NeoStores.openStore(NeoStores.java:422)
at org.neo4j.kernel.impl.store.NeoStores.getOrCreateStore(NeoStores.java:467)
at org.neo4j.kernel.impl.store.NeoStores.<init>(NeoStores.java:365)
at org.neo4j.kernel.impl.store.StoreFactory.openNeoStores(StoreFactory.java:174)
at org.neo4j.kernel.impl.store.StoreFactory.openAllNeoStores(StoreFactory.java:138)
at org.neo4j.kernel.NeoStoreDataSource.buildNeoStore(NeoStoreDataSource.java:661)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:535)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:452)
... 15 more
Caused by: org.neo4j.io.pagecache.impl.FileLockException: Externally locked: /scratch/neo4j/neo4j-community-2.3.4/data/graph.db/neostore.nodestore.db.labels
at org.neo4j.io.pagecache.impl.SingleFilePageSwapper.acquireLock(SingleFilePageSwapper.java:209)
at org.neo4j.io.pagecache.impl.SingleFilePageSwapper.<init>(SingleFilePageSwapper.java:160)
at org.neo4j.io.pagecache.impl.SingleFilePageSwapperFactory.createPageSwapper(SingleFilePageSwapperFactory.java:64)
at org.neo4j.io.pagecache.impl.muninn.MuninnPagedFile.<init>(MuninnPagedFile.java:95)
at org.neo4j.io.pagecache.impl.muninn.MuninnPageCache.map(MuninnPageCache.java:357)
at org.neo4j.kernel.impl.store.CommonAbstractStore.checkStorage(CommonAbstractStore.java:140)
... 27 more
The neo4j server is not able to start and i am getting an error java.lang.NegativeArraySizeException
I have added the complete trace below:
2017-04-17 06:31:12.832+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:227)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:91)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:68)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:443)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:199)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, /var/lib/neo4j/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:193)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:124)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:57)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.recovery.Recovery#26a34b49' failed to initialize. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:415)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:517)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:100)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:189)
... 9 more
Caused by: java.lang.NegativeArraySizeException
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readDynamicRecord(PhysicalLogCommandReaderV3_0_2.java:492)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readDynamicRecords(PhysicalLogCommandReaderV3_0_2.java:506)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readPropertyRecord(PhysicalLogCommandReaderV3_0_2.java:564)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.visitPropertyCommand(PhysicalLogCommandReaderV3_0_2.java:189)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.read(PhysicalLogCommandReaderV3_0_2.java:76)
at org.neo4j.kernel.impl.transaction.command.BaseCommandReader.read(BaseCommandReader.java:49)
at org.neo4j.kernel.impl.transaction.command.BaseCommandReader.read(BaseCommandReader.java:34)
at org.neo4j.kernel.impl.transaction.log.entry.LogEntryParsersV2_3$3.parse(LogEntryParsersV2_3.java:94)
at org.neo4j.kernel.impl.transaction.log.entry.VersionAwareLogEntryReader.readLogEntry(VersionAwareLogEntryReader.java:98)
at org.neo4j.kernel.impl.transaction.log.LogEntryCursor.next(LogEntryCursor.java:54)
at org.neo4j.kernel.recovery.LatestCheckPointFinder.find(LatestCheckPointFinder.java:78)
at org.neo4j.kernel.recovery.PositionToRecoverFrom.apply(PositionToRecoverFrom.java:53)
at org.neo4j.kernel.recovery.DefaultRecoverySPI.getPositionToRecoverFrom(DefaultRecoverySPI.java:80)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:80)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:405)
I have running the neo4j community version from last 5 months and it was working fine. But today all the storage space on my machine where neo4j is running got exhausted. So I deleted few files not related to neo4j. But still, neo4j was not responding to the queries. So I restarted neo4j. But it does not start anymore. Can anyone point me in the right direction?
Here are the logs
ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:215)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:90)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:67)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:444)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:187)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /var/lib/neo4j/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:144)
at org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:40)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:55)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.recovery.Recovery#39ef543' failed to initialize. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:416)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:511)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:99)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:140)
... 10 more
Caused by: java.lang.IllegalArgumentException: Unknown entry type -1 for version -1. At position LogPosition{logVersion=79, byteOffset=85258244} and entry version V2_1
at org.neo4j.kernel.impl.transaction.log.entry.LogEntryVersion.entryParser(LogEntryVersion.java:141)
at org.neo4j.kernel.impl.transaction.log.entry.VersionAwareLogEntryReader.readLogEntry(VersionAwareLogEntryReader.java:84)
at org.neo4j.kernel.impl.transaction.log.LogEntryCursor.next(LogEntryCursor.java:54)
at org.neo4j.kernel.recovery.LatestCheckPointFinder.find(LatestCheckPointFinder.java:78)
at org.neo4j.kernel.recovery.PositionToRecoverFrom.apply(PositionToRecoverFrom.java:53)
at org.neo4j.kernel.recovery.DefaultRecoverySPI.getPositionToRecoverFrom(DefaultRecoverySPI.java:80)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:80)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406)
... 19 more