I am using the ELKI MiniGUI to run LOF. I have found out how to normalize the data before running by -dbc.filter, but I would like to look at the original data records and not the normalized ones in the output.
It seems that there is some flag called -normUndo, which can be set if using the command-line, but I cannot figure out how to use it in the MiniGUI.
This functionality used to exist in ELKI, but has effectively been removed (for now).
only a few normalizations ever supported this, most would fail.
there is no longer a well defined "end" with the visualization. Some users will want to visualize the normalized data, others not.
it requires carrying over normalization information along, which makes data structures more complex (albeit the hierarchical approach we have now would allow this again)
due to numerical imprecision of floating point math, you would frequently not get out the exact same values as you put in
keeping the original data in memory may be too expensive for some use cases, so we would need to add another parameter "keep non-normalized data"; furthermore you would need to choose which (normalized or non-normalized) to use for analysis, and which for visualization. This would not be hard with a full-blown GUI, but you are looking at a command line interface. (This is easy to do with Java, too...)
We would of course appreciate patches that contribute such functionality to ELKI.
The easiest way is this: Add a (non-numerical) label column, and you can identify the original objects, in your original data, by this label.
Related
I'm interested in replicating "hierachies" of data say similar to addresses.
Area
District
Sector
Unit
but you may have different pieces of data associated to each layer, so you may know the area of Sectors, but not of units, and you may know the population of a unit, basically its not a homogenious tree.
I know little about replication of data except brushing Brewers theorem/CAP, and some naive intuition about what eventual consistency is.
I'm looking for SIMPLE mechanisms to replicate this data from an ACID RDB, into other ACID RDBs, systemically the system needs to eventually converge, and obviously each RDB will enforce its own local consistent view, but any 2 nodes may not match at any given time (except 'eventually').
The simplest way to approach this is to simple store all the data in a single message from some designated leader and distribute it...like an overnight dump and load process, but thats too big.
So the next simplest thing (I thought) was if something inside an area changes, I can export the complete set of data inside an area, and load it into the nodes, thats still quite a coarse algorithm.
The next step was if, say an 'object' at any level changed, was to send all the data in the path to that 'object', i.e. if something in a sector is amended, you would send the data associated to the sector, its parent the district, and its parent the sector (with some sort of version stamp and lets say last update wins)....what i wanted to do was to ensure that any replication 'update' was guaranteed to succeed (so it needs the whole path, which potentially would be created if it didn't exist).
then i stumbled on CRDTs and thought....ah...I'm reinventing the wheel here, and the algorithms are allegedly easy in principle, but tricky to get correct in practice
are there standards accepted patterns to do this sort of thing?
In my use case the hierarchies are quite shallow, and there is only a single designated leader (at this time), I'm quite attracted to state based CRDTs because then I can ignore ordering.
Simplicity is the key requirement.
Actually it appears I've reinvented (in a very crude naive way) the SHELF algorithm.
I'll write some code and see if I can get it to work, and try to understand whats going on.
I am trying to export XY data objects from sets of the size of 20-40k elements, but Abaqus is slowing down considerably, and even crashing. In fact, when I create the xy data, Abaqus gives me a warning saying that "the number of xyDataObjects is very large, and might cause performance issues". And so it does.
My usual procedure to is to create the xy data and then export in rpt format. Can someone suggest another method less prone to crashing? Would it be more efficient to divide the output element set into two or more subsets, and concatenate them after exporting?
The method recommended by #hgazibara in the comments is certainly sufficient, but it is laborious.
An easier method, I found, is a package called Abaqus2Matlab, which scrapes any variable you want from the odb. See here: http://www.abaqus2matlab.com/
I just got an interview question.
"Assume you want to build a statistical or machine learning model, but you have very limited data on hand. Your boss told you can duplicate original data several times, to make more data for building the model" Does it help?
Intuitively, it does not help, because duplicating original data doesn't create more "information" to feed the model.
But is there anyone can explain it more statistically? Thanks
Consider e.g. variance. The data set with the duplicated data will have the exact same variance - you don't have a more precise estimate of the distrbution afterwards.
There are, however, some exceptions. For example bootstrap validation helps when evaluating your model, but you have very little data.
Well, it depends on exactly what one means by "duplicating the data".
If one is exactly duplicating the whole data set a number of times, then methods based on maximum likelihood (as with many models in common use) must find exactly the same result since the log likelihood function of the duplicated data is exactly a multiple of the unduplicated data's log likelihood, and therefore has the same maxima. (This argument doesn't apply to methods which aren't based on the likelihood function; I believe that CART and other tree models, and SVM's, are such models. In that case you'll have to work out a different argument.)
However, if by duplicating, one means duplicating the positive examples in a classification problem (which is common enough, since there are often many more negative examples than positive), then that does make a difference, since the likelihood function is modified.
Also if one means bootstrapping, then that, too, makes a difference.
PS. Probably you'll get more interest in this question on stats.stackexchange.com.
Is it preferable to store redundant information, (which can be otherwise generated from existing data,) or to instead convert the existing data each time you need access?
I've simplified my specific problem as best as I can below, hoping that the provided answers are useful as future-reference material.
Example:
Let's say we've developed a program that places data into Squares on a grid (like a super-descriptive game of Tic-Tac-Toe or something) and assigns various details, and a unique identification number to each:
Throughout our program, we often perform logic based on a square's X and/or Y coordinates (checking for 3 in a row) and other times we only need the ID (perhaps to access a string at "SquareName[ID]") - We aren't exactly certain which of these two is accessed more often, but it's a rather close competition.
Up until now we've simply stored the ID inside the square class, and converted it with some simple formulas whenever just the X or Y are needed. Say we want to get coordinates for one square in particular:
int CurrentX = (this.Square.ID - 1) % 3) + 1; // X coordinate, 1 through 3
int CurrentY = (this.Square.ID + 1) / 3; // Y, 1 through 3
Since the squares don't move around or change ID after setup, part of me believes it would be simpler just to store all 3 values inside the Square class, but my other part cringes at the redundancy since access to X and Y is already easy enough to calculate from the existing ID.
(Note, This program itself is not very memory or resource intensive, nor does the size of the grid get much larger, so it mostly comes down to which option is a better practice or rule of thumb.)
What would you do?
As a rule of thumb, for a system where the data is read/write, store your basic data without redundancy.
When performance or other considerations become a practical issue, then you should denormalize as necessary. (i.e. wait for it to be a problem, don't pre-optimize overly much).
Your goal should be the most maintainable code possible. That usually means writing the least code possible. Having extra code to maintain redundant copies of data points will make your code more brittle.
If those are values which can be determined at the moment of creation and then do not change anymore, I would go for variables populated in the constructor. It's not redundant info in so far as that it isn't stored anywhere else, but that's not my main point. When reading my code, I'd usually expect that whenever something is computed at the time of request, it might change per request. It is easy to find the point in the source where the field is populated and where it is changed, especially if it does never change, but you might end up slightly confused when looking at some calculation which will return always the same result, as it's variables can't change, and wonder whether you're just missing a case or this is really static.
Also, using a descriptive variable name, you can get rid of the comments. Not that I generally aim at not commenting, but source code which doesn't even need comments is a pretty save signal for easy to understand code, which might (/should) be your aim.
I'm pretty sure this is a silly newbie question but I didn't know it so I had to ask...
Why do we use data structures, like Linked List, Binary Search Tree, etc? (when no dynamic allocation is needed)
I mean: wouldn't it be faster if we kept a single variable for a single object? Wouldn't that speed up access time? Eg: BST possibly has to run through some pointers first before it gets to the actual data.
Except for when dynamic allocation is needed, is there a reason to use them?
Eg: using linked list/ BST / std::vector in a situation where a simple (non-dynamic) array could be used.
Each thing you are storing is being kept in it's own variable (or storage location). Data structures apply organization to your data. Imagine if you had 10,000 things you were trying to track. You could store them in 10,000 separate variables. If you did that, then you'd always be limited to 10,000 different things. If you wanted more, you'd have to modify your program and recompile it each time you wanted to increase the number. You might also have to modify the code to change the way in which the calculations are done if the order of the items changes because the new one is introduced in the middle.
Using data structures, from simple arrays to more complex trees, hash tables, or custom data structures, allows your code to both be more organized and extensible. Using an array, which can either be created to hold the required number of elements or extended to hold more after it's first created keeps you from having to rewrite your code each time the number of data items changes. Using an appropriate data structure allows you to design algorithms based on the relationships between the data elements rather than some fixed ordering, giving you more flexibility.
A simple analogy might help to understand. You could, for example, organize all of your important papers by putting each of them into separate filing cabinet. If you did that you'd have to memorize (i.e., hard-code) the cabinet in which each item can be found in order to use them effectively. Alternatively, you could store each in the same filing cabinet (like a generic array). This is better in that they're all in one place, but still not optimum, since you have to search through them all each time you want to find one. Better yet would be to organize them by subject, putting like subjects in the same file folder (separate arrays, different structures). That way you can look for the file folder for the correct subject, then find the item you're looking for in it. Depending on your needs you can use different filing methods (data structures/algorithms) to better organize your information for it's intended use.
I'll also note that there are times when it does make sense to use individual variables for each data item you are using. Frequently there is a mixture of individual variables and more complex structures, using the appropriate method depending on the use of the particular item. For example, you might store the sum of a collection of integers in a variable while the integers themselves are stored in an array. A program would need to be pretty simple though before the introduction of data structures wouldn't be appropriate.
Sorry, but you didn't just find a great new way of doing things ;) There are several huge problems with this approach.
How could this be done without requring programmers to massively (and nontrivially) rewrite tons of code as soon as the number of allowed items changes? Even when you have to fix your data structure sizes at compile time (e.g. arrays in C), you can use a constant. Then, changing a single constant and recompiling is sufficent for changes to that size (if the code was written with this in mind). With your approach, we'd have to type hundreds or even thousands of lines every time some size changes. Not to mention that all this code would be incredibly hard to read, write, maintain and verify. The old truism "more lines of code = more space for bugs" is taken up to eleven in such a setting.
Then there's the fact that the number is almost never set in stone. Even when it is a compile time constant, changes are still likely. Writing hundreds of lines of code for a minor (if it exists at all) performance gain is hardly ever worth it. This goes thrice if you'd have to do the same amount of work again every time you want to change something. Not to mention that it isn't possible at all once there is any remotely dynamic component in the size of the data structures. That is to say, it's very rarely possible.
Also consider the concept of implicit and succinct data structures. If you use a set of hard-coded variables instead of abstracting over the size, you still got a data structure. You merely made it implicit, unrolled the algorithms operating on it, and set its size in stone. Philosophically, you changed nothing.
But surely it has a performance benefit? Well, possible, although it will be tiny. But it isn't guaranteed to be there. You'd save some space on data, but code size would explode. And as everyone informed about inlining should know, small code sizes are very useful for performance to allow the code to be in the cache. Also, argument passing would result in excessive copying unless you'd figure out a trick to derive the location of most variables from a few pointers. Needless to say, this would be nonportable, very tricky to get right even on a single platform, and liable to being broken by any change to the code or the compiler invocation.
Finally, note that a weaker form is sometimes done. The Wikipedia page on implicit and succinct data structures has some examples. On a smaller scale, some data structures store much data in one place, such that it can be accessed with less pointer chasing and is more likely to be in the cache (e.g. cache-aware and cache-oblivious data structures). It's just not viable for 99% of all code and taking it to the extreme adds only a tiny, if any, benefit.
The main benefit to datastructures, in my opinion, is that you are relationally grouping them. For instance, instead of having 10 separate variables of class MyClass, you can have a datastructure that groups them all. This grouping allows for certain operations to be performed because they are structured together.
Not to mention, having datastructures can potentially enforce type security, which is powerful and necessary in many cases.
And last but not least, what would you rather do?
string string1 = "string1";
string string2 = "string2";
string string3 = "string3";
string string4 = "string4";
string string5 = "string5";
Console.WriteLine(string1);
Console.WriteLine(string2);
Console.WriteLine(string3);
Console.WriteLine(string4);
Console.WriteLine(string5);
Or...
List<string> myStringList = new List<string>() { "string1", "string2", "string3", "string4", "string5" };
foreach (string s in myStringList)
Console.WriteLine(s);