Docker-Compose persistent data MySQL - docker

I can't seem to get MySQL data to persist if I run $ docker-compose down with the following .yml
version: '2'
services:
# other services
data:
container_name: flask_data
image: mysql:latest
volumes:
- /var/lib/mysql
command: "true"
mysql:
container_name: flask_mysql
restart: always
image: mysql:latest
environment:
MYSQL_ROOT_PASSWORD: 'test_pass' # TODO: Change this
MYSQL_USER: 'test'
MYSQL_PASS: 'pass'
volumes_from:
- data
ports:
- "3306:3306"
My understanding is that in my data container using volumes: - /var/lib/mysql maps it to my local machines directory where mysql stores data to the container and because of this mapping the data should persist even if the containers are destroyed. And the mysql container is just a client interface into the db and can see the local directory because of volumes_from: - data
Attempted this answer and it did not work. Docker-Compose Persistent Data Trouble
EDIT
Changed my .yml as shown below and created a the dir ./data but now when I run docker-compose up --build the mysql container wont start throws error saying
data:
container_name: flask_data
image: mysql:latest
volumes:
- ./data:/var/lib/mysql
command: "true"
mysql:
container_name: flask_mysql
restart: always
image: mysql:latest
environment:
MYSQL_ROOT_PASSWORD: 'test_pass' # TODO: Change this
MYSQL_USER: 'test'
MYSQL_PASS: 'pass'
volumes_from:
- data
ports:
- "3306:3306"
flask_mysql | mysqld: Can't create/write to file '/var/lib/mysql/is_writable' (Errcode: 13 - Permission denied)
flask_mysql | 2016-08-26T22:29:21.182144Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
flask_mysql | 2016-08-26T22:29:21.185392Z 0 [ERROR] --initialize specified but the data directory exists and is not writable. Aborting.

The data container is a superfluous workaround. Data-volumes would do the trick for you. Alter your docker-compose.yml to:
version: '2'
services:
mysql:
container_name: flask_mysql
restart: always
image: mysql:latest
environment:
MYSQL_ROOT_PASSWORD: 'test_pass' # TODO: Change this
MYSQL_USER: 'test'
MYSQL_PASS: 'pass'
volumes:
- my-datavolume:/var/lib/mysql
volumes:
my-datavolume:
Docker will create the volume for you in the /var/lib/docker/volumes folder. This volume persist as long as you are not typing docker-compose down -v

There are 3 ways:
First way
You need specify the directory to store mysql data on your host machine. You can then remove the data container. Your mysql data will be saved on you local filesystem.
Mysql container definition must look like this:
mysql:
container_name: flask_mysql
restart: always
image: mysql:latest
environment:
MYSQL_ROOT_PASSWORD: 'test_pass' # TODO: Change this
MYSQL_USER: 'test'
MYSQL_PASS: 'pass'
volumes:
- /opt/mysql_data:/var/lib/mysql
ports:
- "3306:3306"
Second way
Would be to commit the data container before typing docker-compose down:
docker commit my_data_container
docker-compose down
Third way
Also you can use docker-compose stop instead of docker-compose down (then you don't need to commit the container)

first, you need to delete all old mysql data using
docker-compose down -v
after that add two lines in your docker-compose.yml
volumes:
- mysql-data:/var/lib/mysql
and
volumes:
mysql-data:
your final docker-compose.yml will looks like
version: '3.1'
services:
php:
build:
context: .
dockerfile: Dockerfile
ports:
- 80:80
volumes:
- ./src:/var/www/html/
db:
image: mysql
command: --default-authentication-plugin=mysql_native_password
restart: always
environment:
MYSQL_ROOT_PASSWORD: example
volumes:
- mysql-data:/var/lib/mysql
adminer:
image: adminer
restart: always
ports:
- 8080:8080
volumes:
mysql-data:
after that use this command
docker-compose up -d
now your data will persistent and will not be deleted even after using this command
docker-compose down
extra:- but if you want to delete all data then you will use
docker-compose down -v

You have to create a separate volume for mysql data.
So it will look like this:
volumes_from:
- data
volumes:
- ./mysql-data:/var/lib/mysql
And no, /var/lib/mysql is a path inside your mysql container and has nothing to do with a path on your host machine. Your host machine may even have no mysql at all. So the goal is to persist an internal folder from a mysql container.

Adding on to the answer from #Ohmen, you could also add an external flag to create the data volume outside of docker compose. This way docker compose would not attempt to create it. Also you wouldn't have to worry about losing the data inside the data-volume in the event of $ docker-compose down -v.
The below example is from the official page.
version: "3.8"
services:
db:
image: postgres
volumes:
- data:/var/lib/postgresql/data
volumes:
data:
external: true

Actually this is the path and you should mention a valid path for this to work. If your data directory is in current directory then instead of my-data you should mention ./my-data, otherwise it will give you that error in mysql and mariadb also.
volumes:
./my-data:/var/lib/mysql

Feasible bind mount solution:
mariadb:
image: mariadb:latest
restart: unless-stopped
environment:
- MARIADB_ROOT_PASSWORD=${MARIADB_ROOT_PASSWORD}
volumes:
- type: bind
source: /host/dir
target: /var/lib/mysql

Related

Docker volume not getting deleted

I have an application where I need to reset the database (wipe it completely).
I ran all the commands I could find
docker system prune
docker system prune -a -f
docker volume prune
Using docker volume ls, I copied the volume ID and then ran
docker volume rm "the volume id"
When I do docker system df nothing is shown anymore. However, once I run my app again
docker-compose up --build
the database still contains old values.
What am I doing wrong?
EDIT here is my compose file
version: "3"
services:
nftapi:
env_file:
- .env
build:
context: .
ports:
- '5000:5000'
depends_on:
- postgres
networks:
- postgres
extra_hosts:
- "host.docker.internal:host-gateway"
restart: always
postgres:
container_name: postgres
image: postgres:latest
ports:
- "5432:5432"
volumes:
- /data/postgres:/var/lib/postgresql/data
env_file:
- docker.env
networks:
- postgres
pgadmin:
links:
- postgres:postgres
container_name: pgadmin
image: dpage/pgadmin4
ports:
- "8080:80"
env_file:
- docker.env
networks:
- postgres
networks:
postgres:
driver: bridge
It seems the database in your config is mapped to a directory on your host system:
volumes:
- /data/postgres:/var/lib/postgresql/data
so the data in the containers /var/lib/postgresql/data is read from and written to your local /data/postgres directory.
If you want to delete it you should empty out that directory. (Or move it until you are sure that you can delete it)

How to solve MySQL database data disappear in Docker Swarm

When I use docker swarm with MySQL I met with problem (If docker container rerun mysql data will disappear)
I spend a lot of time to search how to fix this problem, use volume store data and use glusterFs across host share volume but experiencing database data inconsistency.
Is my method right ? or can someone tell we how to fix this problem?
At last , This is my example yaml file :
version: '3.8'
services:
www:
image: httpd:latest
ports:
- "8001:80"
volumes:
- /usr/papertest/src:/var/www/html/
db:
image: mariadb:latest
restart: always
volumes:
- /usr/test/src:/docker-entrypoint-initdb.d
- /etc/timezone:/etc/timezone:ro
- /usr/test/backup:/var/lib/mysql #/usr/test/backup is glusterfs mount place
environment:
MYSQL_ROOT_PASSWORD: MySQL_PASSWORD
MYSQL_DATABASE: MYSQL_DATABASE
#MYSQL_USER: MYSQL_USER
# MYSQL_PASSWORD: MYSQL_PASSWD
phpmyadmin:
image: phpmyadmin
#restart: always
ports:
- 4567:80
environment:
- PMA_ARBITRARY=1

can't start docker-compose services

when I run this docker compose file I have a strange error. that you can see under the text. I'm new with dock so can anyone help me with this.
The error:
ERROR: The compose file './docker-compose.yaml is invalid because:
services.wordpress.build contains an invalid type, it should be a string, or an object
My docker-compose file:
version: "3.7"
services:
db:
build: ./db
container_name: db
ports:
- "3306:3306"
volumes:
- db_data:/var/lib.mysql
environment:
MYSQL_ROOT_PASSWORD: Test123
MYSQL_DATABASE: wordpress
MYSQL_USER: wordpress
MYSQL_PASSWORD: Test123
networks:
website_network:
aliases:
- wordpress
wordpress:
build:
container_name: wordpress_new
ports:
- "80:80"
networks:
website_network:
aliases:
- wordpress
environment:
WORDPRESS_DB_HOST: db:3306
WORDPRESS_DB_USER: wordpress
WORDPRESS_DB_PASSWORD: Test123
WORDPRESS_DB_NAME: wordpress
networks:
website_networks:
name: website_network
volumes:
db_data:
driver: local
name: db_data
Your services.wordpress.build config option needs a value after it like you did in services.db.build: ./db. This value represents where to find your Dockerfile and the context where Docker will try to build your image.
Check the docs on how you can specify the build option.
This is what your file should look like in the wordpress section:
wordpress:
build: BUILD_PATH_HERE # you need a value here if you're building a new docker image
Per the docs, note that if your Dockerfile has an alternate name or you need a special build context, you'll need to specify those values as well as an object. For example:
wordpress:
build:
context: ./some/context/path # can be a relative or absolute path
dockerfile: Dockerfile-alternate-name
Alternatively, if you're using a prebuilt image, you can specify:
wordpress:
image: IMAGE_NAME
You are missing the build property value.
wordpress:
build: SOMETHING NEEDS TO BE HERE
container_name: wordpress_new
A path to where the build runs or a more complex object. Probably just the name of the folder where the container sources are.
This is how it can look like: object if it is an object. And this is how it can look like if it is just a path: path
More info: https://docs.docker.com/compose/compose-file/compose-file-v3/#build

Possible to access files from a different docker image within a container?

I'm trying to set up a docker-compose file for running Apache Guacamole.
The compose file has 3 services, 2 for guacamole itself and 1 database image. The problem is that the database has to be initialized before the guacamole container can use it, but the files to initialize the database are in the guacamole image. The solution I came up with is this:
version: "3"
services:
init:
image: guacamole/guacamole:latest
command: ["/bin/sh", "-c", "cp /opt/guacamole/postgresql/schema/*.sql /init/" ]
volumes:
- dbinit:/init
database:
image: postgres:latest
restart: unless-stopped
volumes:
- dbinit:/docker-entrypoint-initdb.d
- dbdata:/var/lib/postgresql/data
environment:
POSTGRES_USER: guac
POSTGRES_PASSWORD: guac
depends_on:
- init
guacd:
image: guacamole/guacd:latest
restart: unless-stopped
guacamole:
image: guacamole/guacamole:latest
restart: unless-stopped
ports:
- "8080:8080"
environment:
GUACD_HOSTNAME: guacd
POSTGRES_HOSTNAME: database
POSTGRES_DATABASE: guac
POSTGRES_USER: guac
POSTGRES_PASSWORD: guac
depends_on:
- database
- guacd
volumes:
dbinit:
dbdata:
So I have one container whose job is to copy the database initialization files into a volume and then I mount that volume in the database. The problem is that this creates a race condition and is ugly. Is there some elegant solution for this? Is it possible to mount the files from the guacamole image into the database container? I would rather avoid having an extra sql file with the docker-compose file.
Thanks in advance!

Docker Compose - How to store database data?

I am new to docker and developing a project using docker compose. From the documentation I have learned that I should be using data only containers to keep data persistant but I am unable to do so using docker-compose.
Whenever I do docker-compose down it removes the the data from db but by doing docker-compose stop the data is not removed. May be this is because that I am not creating named data volume and docker-compose down hardly removes all the containers. So I tried naming the container but it threw me errors.
Please have a look at my yml file:
version: '2'
services:
data_container:
build: ./data
#volumes:
# - dataVolume:/data
db:
build: ./db
ports:
- "5445:5432"
environment:
- POSTGRES_USER=postgres
- POSTGRES_DB=postgres
# - PGDATA=/var/lib/postgresql/data/pgdata
volumes_from:
# - container:db_bus
- data_container
geoserver:
build: ./geoserver
depends_on:
- db
ports:
- "8004:8080"
volumes:
- ./geoserver/data:/opt/geoserverdata_dir
web:
build: ./web
volumes:
- ./web:/code
ports:
- "8000:8000"
depends_on:
- db
command: python manage.py runserver 0.0.0.0:8000
nginx:
build: ./nginx
ports:
- "83:80"
depends_on:
- web
The Docker file for the data_container is:
FROM stackbrew/busybox:latest
MAINTAINER Tom Offermann <tom#offermann.us>
# Create data directory
RUN mkdir /data
# Create /data volume
VOLUME /data
I tried this but by doing docker-compose down, the data is lost. I tried naming the data_container as you can see the commented line, it threw me this error:
ERROR: Named volume "dataVolume:/data:rw" is used in service "data_container" but no declaration was found in the volumes section.
So right now what I am doing is I created a stand alone data only named container and put that in the volumes_from value of the db. It worked fine and didn't remove any data even after doing docker-compose down.
My queries:
What is the best approach to make containers that can store database's data using the docker-compose and to use them properly ?
My conscious is not agreeing with me on approach that I have opted, the one by creating a stand alone data container. Any thoughts?
docker-compose down
does the following
Stops containers and removes containers, networks, volumes, and images
created by up
So the behaviour you are experiencing is expected.
Use docker-compose stop to shutdown containers created with the docker-compose file but not remove their volumes.
Secondly you don't need the data-container pattern in version 2 of docker compose. So remove that and just use
db:
...
volumes:
- /var/lib/postgresql/data
docker-compose down stops containers but also removes them (with everything: networks, ...).
Use docker-compose stop instead.
I think the best approach to make containers that can store database's data with docker-compose is to use named volumes:
version: '2'
services:
db: #https://hub.docker.com/_/mysql/
image: mysql
volumes:
- "wp-db:/var/lib/mysql:rw"
env_file:
- "./conf/db/mysql.env"
volumes:
wp-db: {}
Here, it will create a named volume called "wp-db" (if it doesn't exist) and mount it in /var/lib/mysql (in read-write mode, the default). This is where the database stores its data (for the mysql image).
If the named volume already exists, it will be used without creating it.
When starting, the mysql image look if there are databases in /var/lib/mysql (your volume) in order to use them.
You can have more information with the docker-compose file reference here:
https://docs.docker.com/compose/compose-file/#/volumes-volume-driver
To store database data make sure your docker-compose.yml will look like
if you want to use Dockerfile
version: '3.1'
services:
php:
build:
context: .
dockerfile: Dockerfile
ports:
- 80:80
volumes:
- ./src:/var/www/html/
db:
image: mysql
command: --default-authentication-plugin=mysql_native_password
restart: always
environment:
MYSQL_ROOT_PASSWORD: example
volumes:
- mysql-data:/var/lib/mysql
adminer:
image: adminer
restart: always
ports:
- 8080:8080
volumes:
mysql-data:
your docker-compose.yml will looks like
if you want to use your image instead of Dockerfile
version: '3.1'
services:
php:
image: php:7.4-apache
ports:
- 80:80
volumes:
- ./src:/var/www/html/
db:
image: mysql
command: --default-authentication-plugin=mysql_native_password
restart: always
environment:
MYSQL_ROOT_PASSWORD: example
volumes:
- mysql-data:/var/lib/mysql
adminer:
image: adminer
restart: always
ports:
- 8080:8080
volumes:
if you want to store or preserve data of mysql then
must remember to add two lines in your docker-compose.yml
volumes:
- mysql-data:/var/lib/mysql
and
volumes:
mysql-data:
after that use this command
docker-compose up -d
now your data will persistent and will not be deleted even after using this command
docker-compose down
extra:- but if you want to delete all data then you will use
docker-compose down -v
to verify or check database data list by using this command
docker volume ls
DRIVER VOLUME NAME
local 35c819179d883cf8a4355ae2ce391844fcaa534cb71dc9a3fd5c6a4ed862b0d4
local 133db2cc48919575fc35457d104cb126b1e7eb3792b8e69249c1cfd20826aac4
local 483d7b8fe09d9e96b483295c6e7e4a9d58443b2321e0862818159ba8cf0e1d39
local 725aa19ad0e864688788576c5f46e1f62dfc8cdf154f243d68fa186da04bc5ec
local de265ce8fc271fc0ae49850650f9d3bf0492b6f58162698c26fce35694e6231c
local phphelloworld_mysql-data

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