I am new to Docker and am trying to cut corners in building Docker images. I heard that Coiled could be used to generate Docker images from Conda environment yamls. I have done this, but now I would like to be able to go from this image to a Docker file.
I use the code snippet from this post to generate a Dockerfile from the image.
sudo docker history [image_id_or_name] --no-trunc $argv | tac | tr -s ' ' | cut -d " " -f 5- | sed 's,^/bin/sh -c #(nop) ,,g' | sed 's,^/bin/sh -c,RUN,g' | sed 's, && ,\n & ,g' | sed 's,\s*[0-9]*[\.]*[0-9]*[kMG]*B\s*$,,g' | head -n -1
I get this result. So my question is, can this be used with docker build to rebuild the image, or does the fact that this image was made with Coiled mean this is not possible?
ADD file:d2abb0e4e7ac1773741f51f57d3a0b8ffc7907348842d773f8c341ba17f856d5 in /
CMD ["bash"]
LABEL MAINTAINER=Anaconda, Inc
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
RUN apt-get update -q
&& apt-get install -q -y bzip2 ca-certificates git libglib2.0-0 libsm6 libxext6 libxrender1 mercurial subversion wget
&& apt-get clean
ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
CMD ["/bin/bash"]
ARG CONDA_VERSION=py38_4.9.2
ARG CONDA_MD5=122c8c9beb51e124ab32a0fa6426c656
|2 CONDA_MD5=122c8c9beb51e124ab32a0fa6426c656 CONDA_VERSION=py38_4.9.2 /bin/sh -c wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-${CONDA_VERSION}-Linux-x86_64.sh -O miniconda.sh
&& echo "${CONDA_MD5} miniconda.sh" > miniconda.md5
&& if ! md5sum --status -c miniconda.md5; then exit 1; fi
&& mkdir -p /opt
&& sh miniconda.sh -b -p /opt/conda
&& rm miniconda.sh miniconda.md5
&& ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
&& echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
&& echo "conda activate base" >> ~/.bashrc
&& find /opt/conda/ -follow -type f -name '*.a' -delete
&& find /opt/conda/ -follow -type f -name '*.js.map' -delete
&& /opt/conda/bin/conda clean -afy
RUN apt-get update --fix-missing
&& apt-get install -y build-essential curl
&& apt-get clean
&& rm -rf /var/lib/apt/lists/*
COPY file:8fbc74e60bc7b14cf283619ce5f38b80e56eab23f93fceaef50bdc8acbce3e87 in environment.yml
RUN conda env update -n coiled -f environment.yml
&& rm environment.yml
&& conda clean --all -y
&& echo "conda activate coiled" >> ~/.bashrc
ENV PATH /opt/conda/envs/coiled/bin:$PATH
SHELL ["conda", "run", "-n", "coiled", "/bin/bash", "-c"]
Is it possible to generate a Dockerfile from an image? I want to know for two reasons:
I can download images from the repository but would like to see the recipe that generated them.
I like the idea of saving snapshots, but once I am done it would be nice to have a structured format to review what was done.
How to generate or reverse a Dockerfile from an image?
You can. Mostly.
Notes: It does not generate a Dockerfile that you can use directly with docker build; the output is just for your reference.
alias dfimage="docker run -v /var/run/docker.sock:/var/run/docker.sock --rm alpine/dfimage"
dfimage -sV=1.36 nginx:latest
It will pull the target docker image automatically and export Dockerfile. Parameter -sV=1.36 is not always required.
Reference: https://hub.docker.com/r/alpine/dfimage
Now hub.docker.com shows the image layers with detail commands directly, if you choose a particular tag.
Bonus
If you want to know which files are changed in each layer
alias dive="docker run -ti --rm -v /var/run/docker.sock:/var/run/docker.sock wagoodman/dive"
dive nginx:latest
On the left, you see each layer's command, on the right (jump with tab), the yellow line is the folder that some files are changed in that layer
(Use SPACE to collapse dir)
Old answer
below is the old answer, it doesn't work any more.
$ docker pull centurylink/dockerfile-from-image
$ alias dfimage="docker run -v /var/run/docker.sock:/var/run/docker.sock --rm centurylink/dockerfile-from-image"
$ dfimage --help
Usage: dockerfile-from-image.rb [options] <image_id>
-f, --full-tree Generate Dockerfile for all parent layers
-h, --help Show this message
To understand how a docker image was built, use the
docker history --no-trunc command.
You can build a docker file from an image, but it will not contain everything you would want to fully understand how the image was generated. Reasonably what you can extract is the MAINTAINER, ENV, EXPOSE, VOLUME, WORKDIR, ENTRYPOINT, CMD, and ONBUILD parts of the dockerfile.
The following script should work for you:
#!/bin/bash
docker history --no-trunc "$1" | \
sed -n -e 's,.*/bin/sh -c #(nop) \(MAINTAINER .*[^ ]\) *0 B,\1,p' | \
head -1
docker inspect --format='{{range $e := .Config.Env}}
ENV {{$e}}
{{end}}{{range $e,$v := .Config.ExposedPorts}}
EXPOSE {{$e}}
{{end}}{{range $e,$v := .Config.Volumes}}
VOLUME {{$e}}
{{end}}{{with .Config.User}}USER {{.}}{{end}}
{{with .Config.WorkingDir}}WORKDIR {{.}}{{end}}
{{with .Config.Entrypoint}}ENTRYPOINT {{json .}}{{end}}
{{with .Config.Cmd}}CMD {{json .}}{{end}}
{{with .Config.OnBuild}}ONBUILD {{json .}}{{end}}' "$1"
I use this as part of a script to rebuild running containers as images:
https://github.com/docbill/docker-scripts/blob/master/docker-rebase
The Dockerfile is mainly useful if you want to be able to repackage an image.
The thing to keep in mind, is a docker image can actually just be the tar backup of a real or virtual machine. I have made several docker images this way. Even the build history shows me importing a huge tar file as the first step in creating the image...
I somehow absolutely missed the actual command in the accepted answer, so here it is again, bit more visible in its own paragraph, to see how many people are like me
$ docker history --no-trunc <IMAGE_ID>
A bash solution :
docker history --no-trunc $argv | tac | tr -s ' ' | cut -d " " -f 5- | sed 's,^/bin/sh -c #(nop) ,,g' | sed 's,^/bin/sh -c,RUN,g' | sed 's, && ,\n & ,g' | sed 's,\s*[0-9]*[\.]*[0-9]*\s*[kMG]*B\s*$,,g' | head -n -1
Step by step explanations:
tac : reverse the file
tr -s ' ' trim multiple whitespaces into 1
cut -d " " -f 5- remove the first fields (until X months/years ago)
sed 's,^/bin/sh -c #(nop) ,,g' remove /bin/sh calls for ENV,LABEL...
sed 's,^/bin/sh -c,RUN,g' remove /bin/sh calls for RUN
sed 's, && ,\n & ,g' pretty print multi command lines following Docker best practices
sed 's,\s*[0-9]*[\.]*[0-9]*\s*[kMG]*B\s*$,,g' remove layer size information
head -n -1 remove last line ("SIZE COMMENT" in this case)
Example:
~ dih ubuntu:18.04
ADD file:28c0771e44ff530dba3f237024acc38e8ec9293d60f0e44c8c78536c12f13a0b in /
RUN set -xe
&& echo '#!/bin/sh' > /usr/sbin/policy-rc.d
&& echo 'exit 101' >> /usr/sbin/policy-rc.d
&& chmod +x /usr/sbin/policy-rc.d
&& dpkg-divert --local --rename --add /sbin/initctl
&& cp -a /usr/sbin/policy-rc.d /sbin/initctl
&& sed -i 's/^exit.*/exit 0/' /sbin/initctl
&& echo 'force-unsafe-io' > /etc/dpkg/dpkg.cfg.d/docker-apt-speedup
&& echo 'DPkg::Post-Invoke { "rm -f /var/cache/apt/archives/*.deb /var/cache/apt/archives/partial/*.deb /var/cache/apt/*.bin || true"; };' > /etc/apt/apt.conf.d/docker-clean
&& echo 'APT::Update::Post-Invoke { "rm -f /var/cache/apt/archives/*.deb /var/cache/apt/archives/partial/*.deb /var/cache/apt/*.bin || true"; };' >> /etc/apt/apt.conf.d/docker-clean
&& echo 'Dir::Cache::pkgcache ""; Dir::Cache::srcpkgcache "";' >> /etc/apt/apt.conf.d/docker-clean
&& echo 'Acquire::Languages "none";' > /etc/apt/apt.conf.d/docker-no-languages
&& echo 'Acquire::GzipIndexes "true"; Acquire::CompressionTypes::Order:: "gz";' > /etc/apt/apt.conf.d/docker-gzip-indexes
&& echo 'Apt::AutoRemove::SuggestsImportant "false";' > /etc/apt/apt.conf.d/docker-autoremove-suggests
RUN rm -rf /var/lib/apt/lists/*
RUN sed -i 's/^#\s*\(deb.*universe\)$/\1/g' /etc/apt/sources.list
RUN mkdir -p /run/systemd
&& echo 'docker' > /run/systemd/container
CMD ["/bin/bash"]
Update Dec 2018 to BMW's answer
chenzj/dfimage - as described on hub.docker.com regenerates Dockerfile from other images. So you can use it as follows:
docker pull chenzj/dfimage
alias dfimage="docker run -v /var/run/docker.sock:/var/run/docker.sock --rm chenzj/dfimage"
dfimage IMAGE_ID > Dockerfile
This is derived from #fallino's answer, with some adjustments and simplifications by using the output format option for docker history. Since macOS and Gnu/Linux have different command-line utilities, a different version is necessary for Mac. If you only need one or the other, you can just use those lines.
#!/bin/bash
case "$OSTYPE" in
linux*)
docker history --no-trunc --format "{{.CreatedBy}}" $1 | # extract information from layers
tac | # reverse the file
sed 's,^\(|3.*\)\?/bin/\(ba\)\?sh -c,RUN,' | # change /bin/(ba)?sh calls to RUN
sed 's,^RUN #(nop) *,,' | # remove RUN #(nop) calls for ENV,LABEL...
sed 's, *&& *, \\\n \&\& ,g' # pretty print multi command lines following Docker best practices
;;
darwin*)
docker history --no-trunc --format "{{.CreatedBy}}" $1 | # extract information from layers
tail -r | # reverse the file
sed -E 's,^(\|3.*)?/bin/(ba)?sh -c,RUN,' | # change /bin/(ba)?sh calls to RUN
sed 's,^RUN #(nop) *,,' | # remove RUN #(nop) calls for ENV,LABEL...
sed $'s, *&& *, \\\ \\\n \&\& ,g' # pretty print multi command lines following Docker best practices
;;
*)
echo "unknown OSTYPE: $OSTYPE"
;;
esac
It is not possible at this point (unless the author of the image explicitly included the Dockerfile).
However, it is definitely something useful! There are two things that will help to obtain this feature.
Trusted builds (detailed in this docker-dev discussion
More detailed metadata in the successive images produced by the build process. In the long run, the metadata should indicate which build command produced the image, which means that it will be possible to reconstruct the Dockerfile from a sequence of images.
If you are interested in an image that is in the Docker hub registry and wanted to take a look at Dockerfile?.
Example:
If you want to see the Dockerfile of image "jupyter/datascience-notebook" type the word "Dockerfile" in the address bar of your browser as shown below.
https://hub.docker.com/r/jupyter/datascience-notebook/
https://hub.docker.com/r/jupyter/datascience-notebook/Dockerfile
Note:
Not all the images have Dockerfile, for example, https://hub.docker.com/r/redislabs/redisinsight/Dockerfile
Sometimes this way is much faster than searching for Dockerfile in Github.
docker pull chenzj/dfimage
alias dfimage="docker run -v /var/run/docker.sock:/var/run/docker.sock --rm chenzj/dfimage"
dfimage image_id
Below is the output of the dfimage command:
$ dfimage 0f1947a021ce
FROM node:8
WORKDIR /usr/src/app
COPY file:e76d2e84545dedbe901b7b7b0c8d2c9733baa07cc821054efec48f623e29218c in ./
RUN /bin/sh -c npm install
COPY dir:a89a4894689a38cbf3895fdc0870878272bb9e09268149a87a6974a274b2184a in .
EXPOSE 8080
CMD ["npm" "start"]
it is possible in just two step. First pull the image then run docker history command. also, shown in SS.
docker pull kalilinux/kali-rolling
docker history --format "{{.CreatedBy}}" kalilinux/kali-rolling --no-trunc
What is image2df
image2df is tool for Generate Dockerfile by an image.
This tool is very useful when you only have docker image and need to generate a Dockerfile whit it.
How does it work
Reverse parsing by history information of an image.
How to use this image
# Command alias
echo "alias image2df='docker run -v /var/run/docker.sock:/var/run/docker.sock --rm cucker/image2df'" >> ~/.bashrc
. ~/.bashrc
# Excute command
image2df <IMAGE>
See help
docker run --rm cucker/image2df --help
For example
$ echo "alias image2df='docker run -v /var/run/docker.sock:/var/run/docker.sock --rm cucker/image2df'" >> ~/.bashrc
$ . ~/.bashrc
$ docker pull mysql
$ image2df mysql
========== Dockerfile ==========
FROM mysql:latest
RUN groupadd -r mysql && useradd -r -g mysql mysql
RUN apt-get update && apt-get install -y --no-install-recommends gnupg dirmngr && rm -rf /var/lib/apt/lists/*
ENV GOSU_VERSION=1.12
RUN set -eux; \
savedAptMark="$(apt-mark showmanual)"; \
apt-get update; \
apt-get install -y --no-install-recommends ca-certificates wget; \
rm -rf /var/lib/apt/lists/*; \
dpkgArch="$(dpkg --print-architecture | awk -F- '{ print $NF }')"; \
wget -O /usr/local/bin/gosu "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch"; \
wget -O /usr/local/bin/gosu.asc "https://github.com/tianon/gosu/releases/download/$GOSU_VERSION/gosu-$dpkgArch.asc"; \
export GNUPGHOME="$(mktemp -d)"; \
gpg --batch --keyserver hkps://keys.openpgp.org --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4; \
gpg --batch --verify /usr/local/bin/gosu.asc /usr/local/bin/gosu; \
gpgconf --kill all; \
rm -rf "$GNUPGHOME" /usr/local/bin/gosu.asc; \
apt-mark auto '.*' > /dev/null; \
[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark > /dev/null; \
apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
chmod +x /usr/local/bin/gosu; \
gosu --version; \
gosu nobody true
RUN mkdir /docker-entrypoint-initdb.d
RUN apt-get update && apt-get install -y --no-install-recommends \
pwgen \
openssl \
perl \
xz-utils \
&& rm -rf /var/lib/apt/lists/*
RUN set -ex; \
key='A4A9406876FCBD3C456770C88C718D3B5072E1F5'; \
export GNUPGHOME="$(mktemp -d)"; \
gpg --batch --keyserver ha.pool.sks-keyservers.net --recv-keys "$key"; \
gpg --batch --export "$key" > /etc/apt/trusted.gpg.d/mysql.gpg; \
gpgconf --kill all; \
rm -rf "$GNUPGHOME"; \
apt-key list > /dev/null
ENV MYSQL_MAJOR=8.0
ENV MYSQL_VERSION=8.0.24-1debian10
RUN echo 'deb http://repo.mysql.com/apt/debian/ buster mysql-8.0' > /etc/apt/sources.list.d/mysql.list
RUN { \
echo mysql-community-server mysql-community-server/data-dir select ''; \
echo mysql-community-server mysql-community-server/root-pass password ''; \
echo mysql-community-server mysql-community-server/re-root-pass password ''; \
echo mysql-community-server mysql-community-server/remove-test-db select false; \
} | debconf-set-selections \
&& apt-get update \
&& apt-get install -y \
mysql-community-client="${MYSQL_VERSION}" \
mysql-community-server-core="${MYSQL_VERSION}" \
&& rm -rf /var/lib/apt/lists/* \
&& rm -rf /var/lib/mysql && mkdir -p /var/lib/mysql /var/run/mysqld \
&& chown -R mysql:mysql /var/lib/mysql /var/run/mysqld \
&& chmod 1777 /var/run/mysqld /var/lib/mysql
VOLUME [/var/lib/mysql]
COPY dir:2e040acc386ebd23b8571951a51e6cb93647df091bc26159b8c757ef82b3fcda in /etc/mysql/
COPY file:345a22fe55d3e6783a17075612415413487e7dba27fbf1000a67c7870364b739 in /usr/local/bin/
RUN ln -s usr/local/bin/docker-entrypoint.sh /entrypoint.sh # backwards compat
ENTRYPOINT ["docker-entrypoint.sh"]
EXPOSE 3306 33060
CMD ["mysqld"]
reference
I've built a docker image containing a number of environment variables, including one called SPARK_HOME. Here is the line from the Dockerfile that declares that env var:
ENV SPARK_HOME="/opt/spark"
When I issue docker run I can see that the env var exists but any reference to it doesn't return anything, as demonstrated in a simple echo:
$ docker run --rm myimage /bin/bash -c "env | grep SPARK_HOME ; echo SPARK_HOME=$SPARK_HOME"
SPARK_HOME=/opt/spark
SPARK_HOME=
$
Am I missing something obvious here? Why can I not refer to the value of an existing env var?
EDIT 1: As requested in the comments the Dockerfile content is included below, below the break.
EDIT 2: Discovered that the var can be referred to if I run the container interactively
$ docker run --rm -it myimage /bin/bash
root#419dd5f13a6f:/tmp# echo $SPARK_HOME
/opt/spark
FROM our.internal.artifact.store/python:3.7-stretch
WORKDIR /tmp
ENV SPARK_VERSION=2.2.1
ENV HADOOP_VERSION=2.8.4
ARG ARTIFACTORY_USER
ARG ARTIFACTORY_ENCRYPTED_PASSWORD
ARG ARTIFACTORY_PATH=our.internal.artifact.store/artifactory/generic-dev/ceng/external-dependencies
ARG SPARK_BINARY_PATH=https://${ARTIFACTORY_PATH}/spark-${SPARK_VERSION}-bin-hadoop2.7.tgz
ARG HADOOP_BINARY_PATH=https://${ARTIFACTORY_PATH}/hadoop-${HADOOP_VERSION}.tar.gz
ADD files/apt-transport-https_1.4.8_amd64.deb /tmp
RUN echo "deb https://username:password#our.internal.artifact.store/artifactory/debian-main-remote stretch main" >/etc/apt/sources.list.d/main.list &&\
echo "deb https://username:password#our.internal.artifact.store/artifactory/maria-db-debian stretch main" >>/etc/apt/sources.list.d/main.list &&\
echo 'Acquire::CompressionTypes::Order:: "gz";' > /etc/apt/apt.conf.d/02update &&\
echo 'Acquire::http::Timeout "10";' > /etc/apt/apt.conf.d/99timeout &&\
echo 'Acquire::ftp::Timeout "10";' >> /etc/apt/apt.conf.d/99timeout &&\
dpkg -i /tmp/apt-transport-https_1.4.8_amd64.deb &&\
apt-get install --allow-unauthenticated -y /tmp/apt-transport-https_1.4.8_amd64.deb &&\
apt-get update --allow-unauthenticated -y -o Dir::Etc::sourcelist="sources.list.d/main.list" -o Dir::Etc::sourceparts="-" -o APT::Get::List-Cleanup="0"
RUN apt-get update && \
apt-get -y install default-jdk
# Detect JAVA_HOME and export in bashrc.
# This will result in something like this being added to /etc/bash.bashrc
# export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
RUN echo export JAVA_HOME="$(readlink -f /usr/bin/java | sed "s:/jre/bin/java::")" >> /etc/bash.bashrc
# Configure Spark-${SPARK_VERSION}
RUN curl --fail -u "${ARTIFACTORY_USER}:${ARTIFACTORY_ENCRYPTED_PASSWORD}" -X GET "${SPARK_BINARY_PATH}" -o /opt/spark-${SPARK_VERSION}-bin-hadoop2.7.tgz \
&& cd /opt \
&& tar -xvzf /opt/spark-${SPARK_VERSION}-bin-hadoop2.7.tgz \
&& rm spark-${SPARK_VERSION}-bin-hadoop2.7.tgz \
&& ln -s spark-${SPARK_VERSION}-bin-hadoop2.7 spark \
&& sed -i '/log4j.rootCategory=INFO, console/c\log4j.rootCategory=CRITICAL, console' /opt/spark/conf/log4j.properties.template \
&& mv /opt/spark/conf/log4j.properties.template /opt/spark/conf/log4j.properties \
&& mkdir /opt/spark-optional-jars/ \
&& mv /opt/spark/conf/spark-defaults.conf.template /opt/spark/conf/spark-defaults.conf \
&& printf "spark.driver.extraClassPath /opt/spark-optional-jars/*\nspark.executor.extraClassPath /opt/spark-optional-jars/*\n">>/opt/spark/conf/spark-defaults.conf \
&& printf "spark.driver.extraJavaOptions -Dderby.system.home=/tmp/derby" >> /opt/spark/conf/spark-defaults.conf
# Configure Hadoop-${HADOOP_VERSION}
RUN curl --fail -u "${ARTIFACTORY_USER}:${ARTIFACTORY_ENCRYPTED_PASSWORD}" -X GET "${HADOOP_BINARY_PATH}" -o /opt/hadoop-${HADOOP_VERSION}.tar.gz \
&& tar -xvzf /opt/hadoop-${HADOOP_VERSION}.tar.gz \
&& rm /opt/hadoop-${HADOOP_VERSION}.tar.gz \
&& ln -s hadoop-${HADOOP_VERSION} hadoop
# Set Environment Variables.
ENV SPARK_HOME="/opt/spark" \
HADOOP_HOME="/opt/hadoop" \
PYSPARK_SUBMIT_ARGS="--master=local[*] pyspark-shell --executor-memory 1g --driver-memory 1g --conf spark.ui.enabled=false spark.executor.extrajavaoptions=-Xmx=1024m" \
PYTHONPATH="/opt/spark/python:/opt/spark/python/lib/py4j-0.10.7-src.zip:$PYTHONPATH" \
PATH="$PATH:/opt/spark/bin:/opt/hadoop/bin" \
PYSPARK_DRIVER_PYTHON="/usr/local/bin/python" \
PYSPARK_PYTHON="/usr/local/bin/python"
# Upgrade pip and setuptools
RUN pip install --index-url https://username:password#our.internal.artifact.store/artifactory/api/pypi/pypi-virtual-all/simple --upgrade pip setuptools
# Install core python packages
RUN pip install --index-url https://username:password#our.internal.artifact.store/artifactory/api/pypi/pypi-virtual-all/simple pipenv
ADD Pipfile /tmp
ADD pysparkdf_helloworld.py /tmp
Ok, contrary to my comment, thats not weird at all.
The issue is just that your local shell already interpolates $SPARK_HOME before sending it to the container, so you're basically calling echo SPARK_HOME=
To fix, just escape the env var in the command: $SPARK_HOME->\$SPARK_HOME
Demo:
$ export SPARK_HOME=foo
$ docker run ... /bin/bash -c "env | grep SPARK_HOME ; echo SPARK_HOME=$SPARK_HOME"
> SPARK_HOME=/opt/spark
> SPARK_HOME=foo
I have a Dockerfile which was originally pulling from ubuntu and I recently came across alpine which is more lightweight so would like to pull from that instead. Part of the code I'm trying to build is called Healpix which depends on cfitsio. When I originally built the ubuntu version I found this Dockerfile https://github.com/MilesCranmer/dockers/blob/master/dockerfiles/healpix.
Essentially the problem is the following works in ubuntu but not with alpine:
RUN echo "3\ngfortran\n\nY\n\n\ngcc\n\n\n\n\nN\n1\nY\nN\nN\n0\n" |
./configure && make
The error I get is
Something went wrong ...
Quitting configuration script !
./configure: exit: line 162: Illegal number: -1
The command '/bin/sh -c echo "3\ngfortran\n\nY\n\n\ngcc\n\n\n\n\nN\n1\nY\nN\nN\n0\n" | ./configure && make' returned a non-zero code: 2
somewhat confusingly the configure script in question isn't 162 lines long https://sourceforge.net/p/healpix/code/HEAD/tree/branches/branch_v350r1006/configure. I have tried installing bash and changing script to that but that didn't work.
ubuntu Dockerfile
FROM ubuntu
RUN apt-get update && apt-get install -y gcc g++ gfortran make wget
WORKDIR /home
RUN wget \
http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio_latest.tar.gz \
&& tar xzf cfitsio_latest.tar.gz
WORKDIR cfitsio
RUN ./configure --prefix=/usr && make && make install
WORKDIR /home
RUN wget \
https://sourceforge.net/projects/healpix/files/Healpix_3.50/Healpix_3.50_2018Dec10.tar.gz \
&& tar xzf Healpix*.tar.gz
WORKDIR Healpix_3.50
RUN echo \
"3\ngfortran\n\nY\n\n\ngcc\n\n\n\n\nN\n1\nY\nN\nN\n0\n" | ./configure \
&& make
alpine Dockerfile
FROM alpine
RUN apk --no-cache add gcc g++ gfortran make wget
WORKDIR /home
RUN wget \
http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio_latest.tar.gz \
&& tar xzf cfitsio_latest.tar.gz
WORKDIR cfitsio
RUN ./configure --prefix=/usr && make && make install
WORKDIR /home
RUN wget \
https://sourceforge.net/projects/healpix/files/Healpix_3.50/Healpix_3.50_2018Dec10.tar.gz \
&& tar xzf Healpix*.tar.gz
WORKDIR Healpix_3.50
RUN echo \
"3\ngfortran\n\nY\n\n\ngcc\n\n\n\n\nN\n1\nY\nN\nN\n0\n" | ./configure \
&& make
TL;DR
In your Dockerfile, use :
RUN /bin/echo -e "3\ngfortran\n[...]" | ./configure && make
to have the same behavior on Ubuntu and Alpine.
Explanations
The ./configure script is executed with /bin/sh (see the shebang). On Ubuntu, /bin/sh is a link to /bin/dash, while on Alpine, /bin/sh is a link to /bin/busybox.
The following small example reproduces your problem.
Consider the following ./configure script :
#!/bin/sh
read -p "1st prompt : " first
read -p "2nd prompt : " second
echo "$first-$second"
On Ubuntu :
docker run --rm -v $PWD/configure:/configure ubuntu:18.04 \
/bin/sh -c 'echo "a\nb" | ./configure'
prints :
a-b
While, on Alpine :
docker run --rm -v $PWD/configure:/configure alpine:3.8 \
/bin/sh -c 'echo "a\nb" | ./configure'
prints :
anb-
On Alpine (busybox), the echoed string (a\nb) is interpreted as a single argument, while on Ubuntu (dash), the \n is used to separate both arguments.
To have the same behavior as Ubuntu on Alpine, you can run :
docker run --rm -v $PWD/configure:/configure alpine:3.8 /bin/sh -c 'echo "a
b
" | ./configure'
or :
docker run --rm -v $PWD/configure:/configure alpine:3.8 /bin/sh -c \
'echo -e "a\nb" | ./configure'
(see the -e parameter of echo)
These 2 commands print :
a-b
As for your Dockerfile, you should write something like :
RUN /bin/echo -e "3\ngfortran\n[...]" | ./configure && make
/bin/echo is used instead of echo because on Ubuntu, echo -e "3\ngfortran\n[...]" will print -e 3\nngfortran\n[...].
This is because echo is parsed a shell built-in, while /bin/echo is explicitly not (source : https://github.com/moby/moby/issues/8949#issuecomment-61682684).
I am working on packaging a dynamically linked c program with docker using multi-sage builds but I am missing a library or something:
FROM debian:9.5-slim as builder
WORKDIR /openconnect
RUN apt update && apt install -y \
build-essential \
gettext \
autoconf \
automake \
libproxy-dev \
libxml2-dev \
libtool \
vpnc-scripts \
pkg-config \
libgnutls28-dev
ADD . .
RUN ./autogen.sh
RUN ./configure \
--with-vpnc-script=/etc/vpnc/vpnc-script \
--without-openssl-version-check
RUN make
RUN make install
RUN ldconfig
FROM builder as gatherer
RUN mkdir /gathered
RUN ldd /usr/local/sbin/openconnect | grep "=> /" | awk '{print $3}' | xargs -I '{}' sh -c "cp -v --parents {} /gathered"
RUN cp --parents /usr/local/sbin/openconnect /gathered
FROM debian:9-slim
COPY --from=gatherer /gathered /
ENTRYPOINT ["/usr/local/sbin/openconnect"]
When I run the container is get:
/usr/local/sbin/openconnect: error while loading shared libraries: libopenconnect.so.5: cannot open shared object file: No such file or directory
I have verified that "/usr/local/lib/libopenconnect.so.5" exists in the final image. Also if I skip out on the multistage then the container runs just fine.
What am I missing?