Spring Boot with Neo4J JDBC and MySQL - neo4j

My Spring Boot Application is secured by Spring Security OAuth2. The userdata is stored in a SQL-database. I followed here royclarkson's Oauth protected REST service. This project works with Spring Data JPA. This works fine.
https://github.com/royclarkson/spring-rest-service-oauth
But now I want to implement my Neo4J Configuration to get data from my Neo4J-Database via Neo4J-JDBC (JDBC-template). Here I followed this GitHub project:
https://github.com/neo4j-examples/movies-java-spring-boot-jdbc
As a standalone application it works, but if I put this two projects togehter, I get this Exception:
HibernateJpaAutoConfiguration.class]: Invocation of init method failed;
nested exception is org.hibernate.HibernateException:
Unable to determine Dialect to use [name=Neo4j, majorVersion=3];
user must register resolver or explicitly set 'hibernate.dialect'
My Neo4jConfig.java looks like this:
#Configuration
public class Neo4jConfig {
//NEO4J Server Implementation via JDBC
private static final String NEO4J_URL = System.getProperty("NEO4J_URL","jdbc:neo4j://localhost:7474");
private static final String NEO4J_USER = System.getProperty("NEO4J_USER","neo4j");
private static final String NEO4J_PASSWORD = System.getProperty("NEO4J_PASSWORD","neo4j");
#Bean
public DataSource dataSource() {
return new DriverManagerDataSource(NEO4J_URL, NEO4J_USER, NEO4J_PASSWORD);
}
public Neo4jConfig(){
}
public String getNeo4JURL(){
return NEO4J_URL;
}
}
TripController.java
import hello.data.Trip;
#RestController
public class TripController {
#Autowired
JdbcTemplate template;
public static final RowMapper<Trip> TRIP_ROW_MAPPER = new RowMapper<Trip>() {
public Trip mapRow(ResultSet rs, int rowNum) throws SQLException {
return new Trip(rs.getString("tripname"),rs.getInt("slots"), rs.getInt("to_date"), rs.getInt("from_date"));
}
};
String SEARCH_TRIPS_QUERY =
" MATCH (t:Trip)\n" +
" RETURN t.tripname as tripname, t.slots as slots, t.to_date as to_date, t.from_date as from_date";
#RequestMapping(path = "/alltrips", method = RequestMethod.GET)
public List<Trip> alltrips() {
return template.query(SEARCH_TRIPS_QUERY, TRIP_ROW_MAPPER);
}
}
I hope you guys understand my question. I know, I am a really newone at Spring, but I hope anyone can help me :)

This is happening because hibernate does not find any dialect for Neo4J as Neo4j is not RDBMS database and dialect is not provided by default. You can use Hibernate OGM (search and include it in pom.xml), and then use following configuration to configure Entitymanager and Transaction manager
#Configuration
#EnableJpaRepositories(basePackages = {
"your repository packages" }, entityManagerFactoryRef = "n4jEntityManager", transactionManagerRef = "n4jTxnManager")
public class DatabaseConfiguration {
#Bean(name = "n4jEntityManager")
public LocalContainerEntityManagerFactoryBean entityManager() {
Map<String, Object> properties = new HashMap<String, Object>();
properties.put("javax.persistence.transactionType", "resource_local");
properties.put("hibernate.ogm.datastore.provider","neo4j");
properties.put("hibernate.ogm.datastore.host","localhost");
properties.put("hibernate.ogm.datastore.port","7474");
properties.put("hibernate.ogm.datastore.database", "your database");
properties.put("hibernate.ogm.datastore.create_database", "true or false");
LocalContainerEntityManagerFactoryBean entityManager = new LocalContainerEntityManagerFactoryBean();
entityManager.setPackagesToScan("your domain packages");
entityManager.setPersistenceUnitName("n4jPU");
entityManager.setJpaPropertyMap(properties);
entityManager.setPersistenceProviderClass(HibernateOgmPersistence.class);
return entityManager;
}
#Bean(name = "n4jTxnManager")
public PlatformTransactionManager txnManager() {
JpaTransactionManager transactionManager = new JpaTransactionManager();
transactionManager.setEntityManagerFactory(mongoEntityManager().getObject());
return transactionManager;
}
}
But I suggest, to remove Hibernate altogether if you are not going to use RDBMS and will only be using Neo4j. Spring data has good support for NoSQL databases and Entities can be defined using annotations like #NodeEntity and #GraphId

Related

Secondary save method in a Spring Data JPA repo?

I have a Spring Data JPA repo exported via Spring Data REST and secured with Spring Security. I also need to save data to this table from an unsecured endpoint but my save() method is secured.
I cannot create a second repository because of https://jira.spring.io/browse/DATAREST-923.
The only way I know of is manipulating the security context by hand every time before calling the secured save() method.
Is there a better way?
If you secured only save method you can try to use insecurely saveAndFlush method.
Another approach - customize your repo. First - implement the custom repo, for example:
public interface CustomRepo {
MyEntity saveUnsecured(MyEntity entity);
}
#Repository
public class CustomRepoImpl implements CustomRepo {
private final EntityManager em;
public CustomRepoImpl(EntityManager em) {
this.em = em;
}
#Transactional
#Override
public MyEntity saveUnsecured(MyEntity entity) {
if (entity.getId() == null) {
em.persist(entity);
return entity;
} else {
return em.merge(entity);
}
}
}
Then extend your repo from custom one:
public interface MyEntityRepo extends JpaRepository<MyEntity, Long>, CustomRepo {
//...
}

How to configure Neo4j embedded to run apoc procedures?

I have setup Neo4j using the latest spring 1.5 release, spring-data-neo4j 4.2, with ogm drivers. The configuration is using embedded driver without URI (so impermanent database store)
Here is the spring #Configuration bean content:
#Bean
public org.neo4j.ogm.config.Configuration neo4jConfiguration() {
org.neo4j.ogm.config.Configuration configuration = new org.neo4j.ogm.config.Configuration();
configuration.driverConfiguration().setDriverClassName("org.neo4j.ogm.drivers.embedded.driver.EmbeddedDriver");
// don't set the URI for embedded so we get an impermanent database
return configuration;
}
#Bean
public SessionFactory getSessionFactory() {
return new SessionFactory(
neo4jConfiguration(),
"xxx.yyy.springboot.neo4j.domain");
}
#Bean
public Neo4jTransactionManager transactionManager() {
return new Neo4jTransactionManager(getSessionFactory());
}
Trying to run built in procedure works fine:
/**
* Test we can call out to standard built-in procedures using cypher
*/
#Test
public void testNeo4jProcedureCalls() {
Session session = sessionFactory.openSession();
Result result = session.query("CALL dbms.procedures()", ImmutableMap.of());
assertThat(result).isNotNull();
List<Map<String, Object>> dataList = StreamSupport.stream(result.spliterator(), false)
.collect(Collectors.toList());
assertThat(dataList).isNotNull();
assertThat(dataList.size()).isGreaterThan(0);
}
Now I'd like to install and run apoc procedures, which I've added to the classpath:
/**
* Test we can call out to https://neo4j-contrib.github.io/neo4j-apoc-procedures
*/
#Test
public void testNeo4jApocProcedureCalls() {
Session session = sessionFactory.openSession();
Result result = session.query("CALL apoc.help(\"apoc\")", ImmutableMap.of());
assertThat(result).isNotNull();
List<Map<String, Object>> dataList = StreamSupport.stream(result.spliterator(), false)
.collect(Collectors.toList());
assertThat(dataList).isNotNull();
assertThat(dataList.size()).isGreaterThan(0);
}
However, the above fails with error Description: There is no procedure with the name 'apoc.help' registered for this database instance
I couldn't find any documentation for registering apoc procedures to run in embedded mode. Couldn't find any reference to registering procedures in the OGM documentation. Any tips or snippets would be appreciated.
Thanks for the pointer Michael. Your example is good for direct access, and this answer gave me the details needed to access through the neo4j-ogm layer:
Deploy a Procedure to Neo4J when using the embedded driver
so here's what I ended up with to register procedures through spring-data-neo4j
Note: isEmbedded() checks the neo4j driver property value contains 'embedded', and the Components.driver() call is static method provided by the ogm layer.
public void registerProcedures(List<Class<?>> toRegister) {
if(isEmbedded()) {
EmbeddedDriver embeddedDriver = (EmbeddedDriver) Components.driver();
GraphDatabaseService databaseService = embeddedDriver.getGraphDatabaseService();
Procedures procedures = ((GraphDatabaseAPI) databaseService).getDependencyResolver().resolveDependency(Procedures.class);
toRegister.forEach((proc) -> {
try {
procedures.registerProcedure(proc);
} catch (KernelException e) {
throw new RuntimeException("Error registering " + proc, e);
}
});
}
}
and add the call to register the procedures in the test when running with embedded:
#Test
public void testNeo4jApocProcedureCalls() {
registerProcedures(asList(
Help.class,
Json.class,
LoadJson.class,
Xml.class,
PathExplorer.class,
Meta.class)
);
Session session = sessionFactory.openSession();
Result result = session.query("CALL apoc.help('apoc')", ImmutableMap.of());
You have to register them manually with your GraphDatabaseService.
See here for an example: https://github.com/neo4j-contrib/rabbithole/blob/3.0/src/main/java/org/neo4j/community/console/Neo4jService.java#L55
With the release of neo4j 4.0 some things have changed (noticeably Procedures vs GlobalProcedures), and that's why I want to share my solution.
I wanted to setup embedded neo4j along with neo4j for test purposes and here are the results:
For some reason when including apoc from maven repository there were missing classes (e.g. apoc.util package contained only one class instead of ~20, also there were missing apoc.coll.Coll functions).
In order to fix that I had to use this answer: Compile Jar from Url in Gradle
and then in my dependencies block I've included
testImplementation(urlFile("https://github.com/neo4j-contrib/neo4j-apoc-procedures/releases/download/4.1.0.0/apoc-4.1.0.0-all.jar", "neo4j-apoc"))
Once you have all the classes register whatever you need, in my case I'm registering only Coll functions:
EmbeddedNeo4jDriver.kt
val managementService = org.neo4j.dbms.api.DatabaseManagementServiceBuilder(TestConfiguration.Neo4j.directory)
.setConfig(BoltConnector.enabled, true)
.setConfig(BoltConnector.listen_address, SocketAddress(TestConfiguration.Neo4j.hostname, TestConfiguration.Neo4j.port))
.build()
managementService.listDatabases().first()
.let(managementService::database)
.let { it as org.neo4j.kernel.internal.GraphDatabaseAPI }
.dependencyResolver
.resolveDependency(org.neo4j.kernel.api.procedure.GlobalProcedures::class.java)
.registerFunction(apoc.coll.Coll::class.java)

Making business domain objects available to Jersey Servlet Context in embedded Jetty server

Using the following dependencies (Gradle):
org.glassfish.jersey.containers:jersey-container-servlet:2.22.2
org.eclipse.jetty:jetty-servlet:9.3.2.v20150730
I have an embedded Jetty server, with a Jersey servlet container... something like this ...
package mypkg.rest.jersey;
import org.eclipse.jetty.server.Server;
import org.eclipse.jetty.servlet.ServletContextHandler;
import org.eclipse.jetty.servlet.ServletHolder;
import org.glassfish.jersey.server.ServerProperties;
import org.glassfish.jersey.servlet.ServletContainer;
import se.transmode.tnm.alarm.api.AlarmRetrieval;
import mypkg.rest.RestServer;
import mypkg.rest.jersey.serviceImpl.ModelAdapter;
public class JerseyBasedRestServer implements RestServer {
public static final int INITIALIZE_ON_USE = 0;
private Server server;
private final ServletContextHandler context;
private final ServletHolder servlet;
private final ModelAdapter modelAdapter;
public JerseyBasedRestServer(BusinessObjects businessObjects) {
this.modelAdapter = new ModelAdapter(businessObjects); //I want this instance to somehow be available for my ServletContainer to use.
context = new ServletContextHandler(ServletContextHandler.SESSIONS);
servlet = context.addServlet(ServletContainer.class, "/*");
servlet.setInitOrder(INITIALIZE_ON_USE);
servlet.setInitParameter(ServerProperties.PROVIDER_PACKAGES, "mypackage.jersey.generated.api.service");
servlet.setInitParameter(ServerProperties.MEDIA_TYPE_MAPPINGS, "json : application/json");
context.setContextPath("/");
}
private void startServlet() {
try {
servlet.start();
servlet.initialize();
} catch (Exception e) {
log.error("Failed to initialize servlet. {}", e.getMessage());
}
}
#Override
public void init(int port) {
server = new Server(port);
server.setHandler(context);
try {
server.start();
server.join();
startServlet();
} catch (Exception e) {
log.error("Failed to start jetty server for rest interface");
} finally {
server.destroy();
}
}
The Jersey Container will run server code and model generated using the Swagger code-gen tool
https://github.com/swagger-api/swagger-codegen#getting-started
which delivers the generated model, JacksonJsonProvider, and a RestApi class:
package mypackage.jersey.generated.api.service
Path("/")
public class RestApi {
private final RestApiService delegate = new RestApiServiceImpl(); //Integration point of the generated code
#GET
#Path("/list/")
#Consumes({ "application/json" })
#Produces({ "application/json" })
public Response retrieveAlarmList(#Context SecurityContext securityContext) throws NotFoundException {
return delegate.retrieveAlarmList(securityContext);
}
}
To integrate the generated code we are left to implement RestApiServiceImpl ourselves.
The ModelAdapter's job is to convert our business objects to the generated rest model.
So the question is how do I make the instance of the adapter of our business objects, in this case ModelAdapter, which lies outside the context of the Jersey servlet context, available to the RestApi class, or rather the RestApiServiceImpl?
I kind of understood from reading the past 24 hours that I need to use some sort of Context Dependency Injection either through Jetty, Jersey, or some other library (Weld seems to appear a lot), and have tried various combinations of #Inject, #Context, etc etc, but have come to the conclusion that I have no clue what I am actually doing... I'm not even sure I understand enough about the situation to phrase my question correctly.
More info can be made available on request.
Any help is appreciated.
EDIT: added a link here to https://github.com/englishbobster/JersetAndJetty
using #peeskillets suggestions, but still not working.
First thing you need to make DI work, is an AbstractBinder. This is where you will make your objects available to be injected.
class Binder extends AbstractBinder {
#Override
protected void configure() {
bind(modelAdapter).to(ModelAdapter.class);
}
}
Then you need to register the binder with Jersey. The easiest way is to register in Jersey's ResourceConfig. In your case, you are not using one. You are configuring everything in the "web.xml". For that, you should take a look at this post.
If you want to change your configuration to use a ResourceConfig, which personally I'd rather use, you can do this
package com.some.pkg;
public class JerseyConfig extends ResourceConfig {
public JerseyConfig() {
packages("mypackage.jersey.generated.api.service");
property(ServerProperties.MEDIA_TYPE_MAPPINGS, "json : application/json");
register(new Binder());
}
}
Then to configure it with Jetty, you can do
servlet.setInitParameter(ServletProperties.JAXRS_APPLICATION_CLASS,
"com.some.pkg.JerseyConfig");
Now you can get rid of those other two init-params, as you are configuring it inside the ResourceConfig.
Another way, without any init-params, is to do
ResourceConfig config = new JerseyConfig();
ServletHolder jerseyServlet = new ServletHolder(ServletContainer(config));
context.addServlet(jerseyServlet, "/*");
See full example of last code snippet, here.
Now you can just inject the ModelAdapter pretty much anywhere within Jersey
In a field
#Inject
private ModelAdapter adapter;
Or in a contructor
#Inject
public RestApi(ModelAdapter adapter) {
this.adapter = adapter;
}
Or method parameter
#GET
public Response get(#Context ModelAdapter adapter) {}

Spring Security 4 issue using Query Method

I am using the latest spring security 4 version and it introduces a new feature to use the logged in user details directly in the query method using expression language. Here is my spring data repository code:
public interface UserRepository extends JpaRepository<User, Long> {
#Query("select username from User u where u.username = ?#{ principal?.username }")
User findByUsername(String username);
}
In the above code, I have an entity User as below:
#Entity
#Table(name = "users")
public class User {
#Id
#Column(name = "username", nullable = false, unique = true)
private String username;
#Column(name = "password", nullable = false)
#NotNull
private String password;
#Column(name = "enabled", nullable = false)
#NotNull
private Boolean enabled;
#Column(name = "role", nullable = false)
#Enumerated(EnumType.STRING)
private Role role;
//getters and setters
Also I have this entry for enabling this feature:
#Bean
public SecurityEvaluationContextExtension securityEvaluationContextExtension() {
return new SecurityEvaluationContextExtension();
}
When I run the application, I get the error:
Caused by: org.springframework.dao.InvalidDataAccessApiUsageException: Authentication object cannot be null; nested exception is java.lang.IllegalArgumentException: Authentication object cannot be null
at org.springframework.orm.jpa.EntityManagerFactoryUtils.convertJpaAccessExceptionIfPossible(EntityManagerFactoryUtils.java:381)
at org.springframework.orm.jpa.vendor.HibernateJpaDialect.translateExceptionIfPossible(HibernateJpaDialect.java:223)
at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.translateExceptionIfPossible(AbstractEntityManagerFactoryBean.java:417)
Caused by: java.lang.IllegalArgumentException: Authentication object cannot be null
at org.springframework.security.access.expression.SecurityExpressionRoot.<init>(SecurityExpressionRoot.java:46)
at org.springframework.security.data.repository.query.SecurityEvaluationContextExtension$1.<init>(SecurityEvaluationContextExtension.java:113)
at org.springframework.security.data.repository.query.SecurityEvaluationContextExtension.getRootObject(SecurityEvaluationContextExtension.java:113)
at org.springframework.data.repository.query.ExtensionAwareEvaluationContextProvider$EvaluationContextExtensionAdapter.<init>(ExtensionAwareEvaluationContextProvider.java:463)
at org.springframework.data.repository.query.ExtensionAwareEvaluationContextProvider.toAdapters(ExtensionAwareEvaluationContextProvider.java:210)
at org.springframework.data.repository.query.ExtensionAwareEvaluationContextProvider.access$000(ExtensionAwareEvaluationContextProvider.java:58)
What could be the issue. Here I am posting to check if there is any issue in using the query method. Can i use like principal.username, is that correct?
Update: When I removed the #Query from repository it works fine. That means its problem with the new spring security 4 using principal.username. Is there anything wrong in this expression?
#Query("select username from User u where u.username = ?#{ principal?.username }")
Pls try this custom class :-
class SecurityEvaluationContextExtension extends EvaluationContextExtensionSupport {
#Override
public String getExtensionId() {
return "Security";
}
#Override
public SecurityExpressionRoot getRootObject() {
Authentication authentication = SecurityContextHolder.getContext().getAuthentication();
return new SecurityExpressionRoot(authentication){};
}
}
Not sure whether you have solved the issue in the meantime, but I noticed that your query should look like:
select u from User u where u.username = ?#{ principal }
assuming your principal object is the plain username String.
If you created your own SecurityEvaluationContextExtension class, and did not implement getAuthentication() method, you might be getting this exception.
In this link, you can see original SecurityEvaluationContextExtension.java file, that implements all necessary methods.
So, you don't need to implement this class on your own. Instead, you can add below dependency to your pom file to have the original one;
<!-- https://mvnrepository.com/artifact/org.springframework.security/spring-security-data -->
<dependency>
<groupId>org.springframework.security</groupId>
<artifactId>spring-security-data</artifactId>
<version>4.2.1.RELEASE</version>
</dependency>
If you are using any other dependency manager rather than maven, you can goto related maven repo and get the definition that you want.
I hope this helps.

How to set argument to Ninject binder regarding on request header

Problem:
I have webapi serviss where almost every user has its own database instance to connect. So i have to set different connection string for each user. To recognize user i will pass specific Token into header. Regarding on this Token, system has to build and set differenct connection string into Data Access layer constructor (Order in this case)
Question:
Is it possible to pass argument to Ninject or any kind of IoC binder regarding on request header?
IOrders _orders;
public HomeController(IOrders order)
{
_orders = order;
}
Here is an Ninject binding, but as you can guess, HttpContext.Current is null.
private static void RegisterServices(IKernel kernel)
{
var some_value = HttpContext.Current.Request.Headers.GetValues("Token");
kernel.Bind<IOrders>()
.To<Orders>()
.WhenInjectedInto<HomeController>()
.WithConstructorArgument("Token", some_value);
}
Maybe there is much elegant way to do this using Controller Factory ?
I would create a service class that does this lookup for you. then inject this service into the Orders implementation.
public interface IRequestContext {
string ConnectionString {get;}
}
public class HttpHeaderRequestContext : IRequestContext {
public string ConnectionString {
get {
var token = HttpContext.Current.Request.Headers.GetValues("Token");
// .. lookup conn string based on token
}
}
}
public class Orders : IOrders {
public Orders(IRequestContext ctx) {
// create new connection w/ ctx.ConnectionString
}
}
using this method, the lookup of headers and connection strings is abstracted away from the implementation. this makes it easier to test and easier swap out with a different method of obtaining a connection string if the need arises.
After implementing Dave approach, i realized that i could solve this connection string injection by feeding HttpContext.Current into Ninject binding like this:
private static void RegisterServices(IKernel kernel)
{
kernel.Bind<IOrders>()
.To<Orders>()
.WhenInjectedInto<HomeController>()
.WithConstructorArgument("smth", x => {
var token = HttpContext.Current.Request.Headers.Get("Token");
var _db = new SomeDataCxt();
var connStr = _db.DbStringRepository.GetByToken(token);
return connStr;
});
}

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