I'm trying to set up a Rails project with Vagrant. Using Rails 5.2 as well.
In my original bundle install, it told me
Your user account isn't allowed to install to the system RubyGems.
You can cancel this installation and run:
bundle install --path vendor/bundle
to install the gems into ./vendor/bundle/, or you can enter your password
and install the bundled gems to RubyGems using sudo.
...So I tried that and got:
Fetching pg 1.0.0
Installing pg 1.0.0 with native extensions
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
current directory: /app/vendor/bundle/ruby/2.5.0/gems/pg-1.0.0/ext
/usr/local/bin/ruby -r ./siteconf20180501-2212-1algyv4.rb extconf.rb
checking for pg_config... no
No pg_config... trying anyway. If building fails, please try again with
--with-pg-config=/path/to/pg_config
checking for libpq-fe.h... no
Can't find the 'libpq-fe.h header
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/local/bin/$(RUBY_BASE_NAME)
--with-pg
--without-pg
--enable-windows-cross
--disable-windows-cross
--with-pg-config
--without-pg-config
--with-pg_config
--without-pg_config
--with-pg-dir
--without-pg-dir
--with-pg-include
--without-pg-include=${pg-dir}/include
--with-pg-lib
--without-pg-lib=${pg-dir}/lib
To see why this extension failed to compile, please check the mkmf.log which can be found here:
/app/vendor/bundle/ruby/2.5.0/extensions/x86_64-linux/2.5.0-static/pg-1.0.0/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in /app/vendor/bundle/ruby/2.5.0/gems/pg-1.0.0 for inspection.
Results logged to /app/vendor/bundle/ruby/2.5.0/extensions/x86_64-linux/2.5.0-static/pg-1.0.0/gem_make.out
An error occurred while installing pg (1.0.0), and Bundler cannot continue.
Make sure that `gem install pg -v '1.0.0'` succeeds before bundling.
Looking at the log file mentioned has this in it:
find_executable: checking for pg_config... -------------------- no
--------------------
find_header: checking for libpq-fe.h... -------------------- no
"gcc -o conftest -I/usr/local/include/ruby-2.5.0/x86_64-linux -I/usr/local/include/ruby-2.5.0/ruby/backward -I/usr/local/include/ruby-2.5.0 -I. -O3 -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wno-tautological-compare -Wno-parentheses-equality -Wno-constant-logical-operand -Wno-self-assign -Wunused-variable -Wimplicit-int -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wimplicit-function-declaration -Wdeprecated-declarations -Wno-packed-bitfield-compat -Wsuggest-attribute=noreturn conftest.c -L. -L/usr/local/lib -Wl,-rpath,/usr/local/lib -L. -fstack-protector -rdynamic -Wl,-export-dynamic -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lruby-static -lpthread -lrt -ldl -lcrypt -lm -lc"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
"gcc -E -I/usr/local/include/ruby-2.5.0/x86_64-linux -I/usr/local/include/ruby-2.5.0/ruby/backward -I/usr/local/include/ruby-2.5.0 -I. -O3 -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wno-tautological-compare -Wno-parentheses-equality -Wno-constant-logical-operand -Wno-self-assign -Wunused-variable -Wimplicit-int -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wimplicit-function-declaration -Wdeprecated-declarations -Wno-packed-bitfield-compat -Wsuggest-attribute=noreturn conftest.c -o conftest.i"
conftest.c:3:22: fatal error: libpq-fe.h: No such file or directory
compilation terminated.
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <libpq-fe.h>
/* end */
Unclear how to proceed and get this working. Would love some help or advice. Thanks!
Edit:
I run sudo apt-get install libpq-dev and then get an error related to and old version.
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
current directory: /tmp/bundler20180501-4263-lecb9zpg-1.0.0/gems/pg-1.0.0/ext
/usr/local/bin/ruby -r ./siteconf20180501-4263-1qowxi6.rb extconf.rb
checking for pg_config... yes
Using config values from /usr/bin/pg_config
checking for libpq-fe.h... yes
checking for libpq/libpq-fs.h... yes
checking for pg_config_manual.h... yes
checking for PQconnectdb() in -lpq... yes
checking for PQsetSingleRowMode()... no
Your PostgreSQL is too old. Either install an older version of this gem or upgrade your database to at least PostgreSQL-9.2.
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
When I try to install Nokogiri using:
gem install nokogiri
I get this error:
ERROR: While executing gem ... (Errno::EACCES)
Permission denied # rb_sysopen - /usr/local/lib/ruby/gems/2.3.0/gems/nokogiri-1.6.8.1/.autotest
I ran both of these commands first:
gem update --system
xcode-select --install
Can anyone see what's wrong here?
If I run this using sudo I get:
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: /usr/local/lib/ruby/gems/2.3.0/gems/nokogiri-1.6.8.1/ext/nokogiri
/usr/local/opt/ruby/bin/ruby -r ./siteconf20161127-35515-164lnl6.rb extconf.rb
checking if the C compiler accepts ... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers.
and here's the log file:
"clang -o conftest -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0/x86_64-darwin14 -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0/ruby/backward -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0 -I. -I/usr/local/opt/libyaml/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -fno-common -pipe conftest.c -L. -L/usr/local/Cellar/ruby/2.3.3/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L. -fstack-protector -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -lruby.2.3.0 -lpthread -ldl -lobjc "
Undefined symbols for architecture x86_64:
"start", referenced from:
implicit entry/start for main executable
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
You can try to do this:
gem install nokogiri -v '1.6.8.1' -- --use-system-libraries=true --with-xml2-include=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/libxml2
So this turned out to be a mix of permissions and file ownership. Once that was all sorted out I just had to rerun the gem install and close then reopen the terminal before running rails -v.
Building a new Rails app and getting a problem with nokogiri. Said to try gem install nokogiri -v '1.6.8.1' which fails with output below. I tried deleting Gemfile.lock and using the Gemfile from another app which has no problem—bundle install still fails. The original failure is bundle install which continues to work in other apps.
From console:
gem install nokogiri -v '1.6.8.1'
Building native extensions. This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri
~/.rubies/ruby-2.3.1/bin/ruby -r ./siteconf20161008-60071-tmqi2l.rb extconf.rb
Ignoring byebug-6.0.2 because its extensions are not built. Try: gem pristine byebug --version 6.0.2
Ignoring byebug-3.4.0 because its extensions are not built. Try: gem pristine byebug --version 3.4.0
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv using --with-opt-* flags... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri/tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
unsigned short* in = (unsigned short*) inb;
^~~~~~~~~~~~~~~~~~~~~
encoding.c:815:27: warning: cast from 'unsigned char *' to 'unsigned short *' increases required alignment from 1 to 2 [-Wcast-align]
unsigned short* out = (unsigned short*) outb;
^~~~~~~~~~~~~~~~~~~~~~
4 warnings generated.
CC error.lo
CC parserInternals.lo
CC parser.lo
CC tree.lo
CC hash.lo
CC list.lo
CC xmlIO.lo
xmlIO.c:1450:52: error: use of undeclared identifier 'LZMA_OK'
ret = (__libxml2_xzclose((xzFile) context) == LZMA_OK ) ? 0 : -1;
^
1 error generated.
make[2]: *** [xmlIO.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=~/.rubies/ruby-2.3.1/bin/$(RUBY_BASE_NAME)
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:365:in `block (2 levels) in process_recipe'
from extconf.rb:258:in `block in chdir_for_build'
from extconf.rb:257:in `chdir'
from extconf.rb:257:in `chdir_for_build'
from extconf.rb:364:in `block in process_recipe'
from extconf.rb:263:in `tap'
from extconf.rb:263:in `process_recipe'
from extconf.rb:556:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1 for inspection.
Results logged to ~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/gem_make.out
mkmf.log:
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
"clang -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe -Werror -c conftest.c"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */
"clang -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe -Wno-error=unused-command-line-argument-hard-error-in-future -Werror -c conftest.c"
error: unknown warning option '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean '-Werror=unused-command-line-argument'? [-Werror,-Wunknown-warning-option]
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */
have_header: checking for iconv.h... -------------------- yes
"clang -E -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -o conftest.i"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <iconv.h>
/* end */
--------------------
have_library: checking for gzdopen() in -lz... -------------------- yes
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lz -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <zlib.h>
4:
5: /*top*/
6: extern int t(void);
7: int main(int argc, char **argv)
8: {
9: if (argc > 1000000) {
10: printf("%p", &t);
11: }
12:
13: return 0;
14: }
15: int t(void) { void ((*volatile p)()); p = (void ((*)()))gzdopen; return !p; }
/* end */
--------------------
have_iconv?: checking for iconv using --with-opt-* flags... -------------------- yes
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lpthread -ldl -lobjc "
Undefined symbols for architecture x86_64:
"_iconv", referenced from:
_main in conftest-d46614.o
"_iconv_open", referenced from:
_main in conftest-d46614.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <stdlib.h>
4: #include <iconv.h>
5:
6: int main(void)
7: {
8: iconv_t cd = iconv_open("", "");
9: iconv(cd, NULL, NULL, NULL, NULL);
10: return EXIT_SUCCESS;
11: }
/* end */
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -liconv -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <stdlib.h>
4: #include <iconv.h>
5:
6: int main(void)
7: {
8: iconv_t cd = iconv_open("", "");
9: iconv(cd, NULL, NULL, NULL, NULL);
10: return EXIT_SUCCESS;
11: }
/* end */
--------------------
gem_make.out:
current directory: ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri
~/.rubies/ruby-2.3.1/bin/ruby -r ./siteconf20161008-60071-tmqi2l.rb extconf.rb
Ignoring byebug-6.0.2 because its extensions are not built. Try: gem pristine byebug --version 6.0.2
Ignoring byebug-3.4.0 because its extensions are not built. Try: gem pristine byebug --version 3.4.0
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv using --with-opt-* flags... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri/tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
unsigned short* in = (unsigned short*) inb;
^~~~~~~~~~~~~~~~~~~~~
encoding.c:815:27: warning: cast from 'unsigned char *' to 'unsigned short *' increases required alignment from 1 to 2 [-Wcast-align]
unsigned short* out = (unsigned short*) outb;
^~~~~~~~~~~~~~~~~~~~~~
4 warnings generated.
CC error.lo
CC parserInternals.lo
CC parser.lo
CC tree.lo
CC hash.lo
CC list.lo
CC xmlIO.lo
xmlIO.c:1450:52: error: use of undeclared identifier 'LZMA_OK'
ret = (__libxml2_xzclose((xzFile) context) == LZMA_OK ) ? 0 : -1;
^
1 error generated.
make[2]: *** [xmlIO.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=~/.rubies/ruby-2.3.1/bin/$(RUBY_BASE_NAME)
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:365:in `block (2 levels) in process_recipe'
from extconf.rb:258:in `block in chdir_for_build'
from extconf.rb:257:in `chdir'
from extconf.rb:257:in `chdir_for_build'
from extconf.rb:364:in `block in process_recipe'
from extconf.rb:263:in `tap'
from extconf.rb:263:in `process_recipe'
from extconf.rb:556:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/mkmf.log
extconf failed, exit code 1
Run this first:
xcode-select --install
Then rerun your bundle install
Reference: https://github.com/sparklemotion/nokogiri/issues/1483
I tried #the_basterd's recommendation. That didn't work, but the reference was good—thank you the_basterd. What worked from that reference was:
brew install libxml2
bundle config build.nokogiri --use-system-libraries --with-xml2-include=/usr/local/opt/libxml2/include/libxml2
Reference: https://github.com/sparklemotion/nokogiri/issues/1483
Later postings at that ref said that what I posted above "is strongly recommended against by the Nokogiri."
brew unlink xz; bundle install; brew link xz is preferred.
You can also encounter the same error message if you've downloaded XCode Tools but haven't yet agreed to the license.
From Terminal, run:
sudo xcodebuild -license
Enter your admin password, space through the agreement and type agree to accept. Run brew doctor and if necessary, brew update and you should be in good shape.
I ran into this issue with nokogiri-1.6.8.1 while using bundle install --path vendor/bundle to install directly into a project located within a Google Drive sync folder. The hangup seemed related to libxml2.
While reading through the GitHub issue referenced by #Greg and #the_basterd, I noticed that someone was having trouble installing into a Box sync folder. Moving my project folder to another location worked.
Not sure what the underlying problem is when installing to a sync folder, but I'd be interested to learn if anyone had any thoughts.
Haven't tested this with Dropbox, but perhaps that would cause problems, too.
I created a brand new Rails app and added gem wit to the Gemfile. Now, when I run bundle install, I get this error. In Googling to find a solution, I came across four different possibilities but none of them apply to my dev environment (OSX 10.9.5, Brew 0.9.5). Has anyone solved this issue?
Links:
The compiler failed to generate an executable file. (RuntimeError)
https://github.com/CocoaPods/CocoaPods/issues/1727
https://github.com/copiousfreetime/hitimes/issues/26
https://teamtreehouse.com/forum/rails-gem-wont-install-properly
...
Using turbolinks 2.5.2
Using uglifier 2.5.3
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
/Users/user/.rvm/rubies/ruby-2.1-head/bin/ruby -r ./siteconf20141204-96223-d2ceuv.rb extconf.rb
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 12.7M 100 12.7M 0 0 741k 0 0:00:17 0:00:17 --:--:-- 723k
checking for main() in -lsox... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/Users/user/.rvm/rubies/ruby-2.1-head/bin/ruby
--with-wit-dir
--without-wit-dir
--with-wit-include
--without-wit-include=${wit-dir}/include
--with-wit-lib
--without-wit-lib=${wit-dir}/lib
--with-soxlib
--without-soxlib
/Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:456:in `try_do': The compiler failed to generate an executable file. (RuntimeError)
You have to install development tools first.
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:541:in `try_link0'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:556:in `try_link'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:742:in `try_func'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:973:in `block in have_library'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:918:in `block in checking_for'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:351:in `block (2 levels) in postpone'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:321:in `open'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:351:in `block in postpone'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:321:in `open'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:347:in `postpone'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:917:in `checking_for'
from /Users/user/.rvm/rubies/ruby-2.1-head/lib/ruby/2.1.0/mkmf.rb:968:in `have_library'
from extconf.rb:33:in `<main>'
extconf failed, exit code 1
Gem files will remain installed in /Users/user/.rvm/gems/ruby-2.1-head/gems/wit-1.0.5 for inspection.
Results logged to /Users/user/.rvm/gems/ruby-2.1-head/extensions/x86_64-darwin-13/2.1.0/wit-1.0.5/gem_make.out
An error occurred while installing wit (1.0.5), and Bundler cannot continue.
Make sure that `gem install wit -v '1.0.5'` succeeds before bundling.
Here is the output for mkmf.log
$ cat /Users/user/.rvm/gems/ruby-2.1-head/extensions/x86_64-darwin-13/2.1.0/wit-1.0.5/mkmf.log
"/usr/bin/clang -o conftest -I/Users/user/.rvm/rubies/ruby-2.1-head/include/ruby-2.1.0/x86_64-darwin13.0 -I/Users/user/.rvm/rubies/ruby-2.1-head/include/ruby-2.1.0/ruby/backward -I/Users/user/.rvm/rubies/ruby-2.1-head/include/ruby-2.1.0 -I. -I/Users/user/.rvm/gems/ruby-2.1-head/gems/wit-1.0.5/ext/wit/libwit/include -I/Users/user/.rvm/rubies/ruby-2.1-head/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wextra-tokens -fno-common -pipe conftest.c -L. -L/Users/user/.rvm/rubies/ruby-2.1-head/lib -L/Users/user/.rvm/gems/ruby-2.1-head/gems/wit-1.0.5/ext/wit/libwit/lib -L/Users/user/.rvm/rubies/ruby-2.1-head/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl/lib -L. -fstack-protector -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl/lib -lwit -lsox -lcurl -lruby.2.1.0 -lpthread -lgmp -ldl -lobjc "
ld: library not found for -lsox
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
I got this problem solved by reinstalling X-Code's Command Line tools: xcode-install --select
I'm having issues installing Rails 4 with rvm. I saw another solution with removing rvm from my system, but that is not an option because I need isolated gemsets. This is my terminal:
Edmunds-MacBook-Pro:pipetask edmundmai$ rvm current
ruby-2.0.0-p247#pipetask
Edmunds-MacBook-Pro:pipetask edmundmai$ ls
Gemfile README.rdoc app config db lib public
Gemfile.lock Rakefile bin config.ru gcc-4.2 log vendor
Edmunds-MacBook-Pro:pipetask edmundmai$ gem install rails -v=4.0.0
Building native extensions. This could take a while...
ERROR: Error installing rails:
ERROR: Failed to build gem native extension.
/Users/edmundmai/.rvm/rubies/ruby-2.0.0-p247/bin/ruby extconf.rb
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/Users/edmundmai/.rvm/rubies/ruby-2.0.0-p247/bin/ruby
--with-atomic_reference-dir
--without-atomic_reference-dir
--with-atomic_reference-include
--without-atomic_reference-include=${atomic_reference-dir}/include
--with-atomic_reference-lib
--without-atomic_reference-lib=${atomic_reference-dir}/
/Users/edmundmai/.rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/mkmf.rb:434:in `try_do': The compiler failed to generate an executable file. (RuntimeError)
You have to install development tools first.
from /Users/edmundmai/.rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/mkmf.rb:519:in `try_link0'
from /Users/edmundmai/.rvm/rubies/ruby-2.0.0-p247/lib/ruby/2.0.0/mkmf.rb:817:in `try_run'
from extconf.rb:26:in `<main>'
Gem files will remain installed in /Users/edmundmai/.rvm/gems/ruby-2.0.0-p247#pipetask/gems/atomic-1.1.14 for inspection.
Results logged to /Users/edmundmai/.rvm/gems/ruby-2.0.0-p247#pipetask/gems/atomic-1.1.14/ext/gem_make.out
Edmunds-MacBook-Pro:pipetask edmundmai$
How would I debug this? I don't even know which mkmf.log it is talking about, I have like 50 of them when I do locate mkmf.log. What is development tools? I have xcode 5 and command line tools.
==Update
This might be the mkmf.log file it was referring to?
Edmunds-MacBook-Pro:bin edmundmai$ more /Users/emai/mkmf.log
have_func: checking for rb_hash_foreach()... -------------------- yes
"clang -o conftest -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0/x86_64-darwin11.4.2 -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0/ruby/backward -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0 -I. -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -I/Users/emai/.rvm/usr/include -I/Users/emai/.rvm/usr/include -O3 -g3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -pipe conftest.c -L. -L/Users/emai/.rvm/rubies/ruby-2.0.0-p0/lib -L/Users/emai/.rvm/usr/lib -L. -fstack-protector -L/Users/emai/.rvm/usr/lib -L/Users/emai/.rvm/usr/lib -lruby-static -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(void) {return 0;}
/* end */
"clang -o conftest -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0/x86_64-darwin11.4.2 -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0/ruby/backward -I/Users/emai/.rvm/rubies/ruby-2.0.0-p0/include/ruby-2.0.0 -I. -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -I/Users/emai/.rvm/usr/include -I/Users/emai/.rvm/usr/include -O3 -g3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -pipe conftest.c -L. -L/Users/emai/.rvm/rubies/ruby-2.0.0-p0/lib -L/Users/emai/.rvm/usr/lib -L. -fstack-protector -L/Users/emai/.rvm/usr/lib -L/Users/emai/.rvm/usr/lib -lruby-static -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: /*top*/
4: int main(void) {return 0;}
5: extern int t(void);
6: int t(void) { void ((*volatile p)()); p = (void ((*)()))rb_hash_foreach; return 0; }
/* end */
--------------------