Working with Neo4j in a Rails app.
I have nodes with several string properties containing long strings of user generated content. For example in my nodes of type: "Book", I might have properties, "review", and "summary", which would contain long-form string values.
I was trying to design queries that returned nodes which match those properties to general language search terms provided by a user in a search box. As my query got increasingly complicated, it occurred to me that I was trying to resolve natural language search.
I looked into some of the popular search gems in Rails, but they all seem to depend on ActiveRecord. What search solutions exist for Neo4j.rb?
There are a few ways that you could go about this!
As FrobberOfBits said, Neo4j has what are called "legacy indexes" which use Lucene it the background to provide indexing of generic things. It does support the new schema indexes. Unfortunately those are based on exact matches (though I'm pretty sure that will change in Neo4j 2.3.x somewhat).
Neo4j does support pattern matching on strings via the =~ operator, but those queries aren't indexed. So the performance depends on the size of your database.
We often recommend a gem called searchkick which lets you define indexes for Elasticsearch in your models. Then you can just call a Model.search method to do your searches and it will first query elasticsearch to get the node IDs and then load those nodes via Neo4j.rb. You can use that via the neo4j-searchkick gem: https://github.com/neo4jrb/neo4j-searchkick
Lastly, if you're doing NLP and are trying to extract important words from your text, you could create a Tag/Word label and create relationships from your nodes to these NLP extracted nodes so that you can search based on those nodes in the future. You could even build recommendations from one text node to another based on the number/type of common tag nodes.
I don't know if anything specific exists for neo4j.rb and activerecord. What I can say is that generally this stuff is handled through the use of legacy indexes that are implemented by Lucene.
The premise is that you create a lucene-managed index on certain properties, and that then gives you access to use the Lucene query language via cypher to get data from those indices. Relative to neo4j.rb, it doesn't look any different than running cypher queries, like this:
START item=node:node_auto_index("(title:'foo bar' AND body:baz*) OR title:'bat'")
RETURN item
Note that lucene indexes and that query language can only be used in a START block, not a MATCH block. Refer to the Lucene Query Syntax to discover more about what you can do with that query syntax (fuzzy matching, wildcards, etc -- quite a bit more extensive than what regex would give you).
Related
I'm working on a scientific database that contains model statements such as:
"A possible cause of Fibromyalgia is Microglial hyperactivity, as supported by these 10 studies: [...] and contradicted by 1 study [...]."
I need to specify a source for statements in Neo4j and be able to do 2 ways operations, like:
Find all statements supported by a study
Find all studies supporting a statement
The most immediate idea I had is to use the DOI of studies as unique identifiers in the relationship property. The big con of this idea is that I have to scan all the relationships to find the list of all statements supported by a study.
So, since it is impossible to make a link between a study and a relationship, I had the idea to make 2 links, at each extremity of the relationship. The obvious con is that it does not give information about the relationship, like "support" or "contradict".
So, I came to the conclusion that I need a node for the hypothesis:
However, it overloads the graph and we are not anymore in the classical node -relationship-> node design that makes property graphs so easy to understand.
Using RDF, it is possible to add properties to relationships using subgraphs, however there we enter semantic graphs and quad stores, which is a more complex tool.
So I'm wondering if there is a "correct" design pattern for Neo4j to support this type of need that I may not have imagined instead?
Thanks
Based on your requirements, I think put support_study as property of edge will do the work:
Thus we could query the following as:
Find all statements supported by a study
MATCH ()-[e:has_cause{support_study: "doi_foo_bar"}]->()
RETURN e;
Find all studies supporting a statement
Given statement is “foo” is caused by “bar”
MATCH (v:disease{name: "foo"})-[e:has_cause]->(v1:sympton{name: "bar")
RETURN DISTINCT e.support_study;
While, this is mostly based on NebulaGraph, where:
It speaks cypher DQL(together with nGQL)
It supports properties in edge
It used 4-tuple(rather than a Key) to distingush an edge(src,dst,edge_type,rank), where rank is an unique design to enable multiple has_cause edge instance between one pair of disease-> sympton, you could put the hash of doi or other number as rank field(or omit, of cause, it will be 0)
It’s distributed and Open-Source(Apache 2.0)
Note:
In NebulaGraph, index should be created on has_cause(support_study) and disease(name), ref: https://www.siwei.io/en/nebula-index-explained/ and https://docs.nebula-graph.io/3.2.0/3.ngql-guide/14.native-index-statements/
But, I think it applies to neo4j, too :)
call apoc.index.nodes('Product', 'name:iPhone*') yield node return node
In my graph I have 'iPhone X' and 'iPhone Plus', but this query doesn't return anything. I also have an index on 'name' property of Product.
Indexes
ON :Product(name) ONLINE
apoc.index.nodes is one of the APOC procedures for "manual indexes", which are also confusingly referred to in various docs as "legacy indexes" and "explicit indexes". Such indexes use the Apache Lucene library and are NOT the same as the standard neo4j indexes that most people use, and the way you create/update/use such indexes is also not standard.
For example, you cannot create a "manual index" via a Cypher CREATE INDEX clause. And neo4j Browser's :schema command will not show any manual indexes.
If you will only be searching :Product(name) via manual indexes, then you should drop your standard index for :Product(name), since it will not be needed but will add overhead (time and space) to your DB.
One way to create/update/use manual indexes is through the special APOC procedures. The APOC documentation for manual indexes (linked above) provides a good amount of information about how to add nodes and relationships to such indexes, and how to search using them.
As an example, before you can use the query in your question, you first have to add all the :Product(name) values to the Product manual index. If you want to add them all at once, you can use the following query (and since it has to return something, it just returns a count of the number of Products):
MATCH (p:Product)
CALL apoc.index.addNode(p, ['name'])
RETURN count(*)
[UPDATED]
Manual indexing is typically only used for partial and fuzzy text search use cases. When you just need exact value matching, standard indexes are recommended, especially since they require much less effort on your part. The reason manual indexes are called "manual" is because the responsibility for maintaining them falls entirely on your shoulders. That is, your node/relationship/property addition/removal/update queries would normally have to add/remove/update any relevant manual index entries as well. Note that when you update a property that is manually indexed, you have to remove the old index entry and then add the new entry.
I'm moving from Neo4j 2.2.* to (still prerelease) 3.0.0 and all of a sudden it seems that configuration parameters
node_auto_indexing=true
relationship_auto_indexing=true
node_keys_indexable=some_node_property
relationship_keys_indexable=some_rel_property
had gone and are not available any more. This is sad because I need full-text indexing (namely, fuzzy search queries and range searches), I was happily using it since 2.0.0 and had a naive hope that new Lucene 5.5 will make my life better with 3.0.0.
Is this functionality completely removed? START clause is still here in Cypher, neo4j-shell still has command which allows manipulating "legacy" FT indices so my question is:
how do I populate my FT index without using Java or another external programming language?
case 1: I import some bunch of "static" data into the graph which
will rarely be updated (consider dictionary) and need to arrange FTS
on those once, and manually perform complete reindex on occasional updates of the dataset;
case 2: nodes and relationships with specific properties
automagically get indexed upon creation or upon assignment of a new value to the property with specific name, near-realtime, as it used to be before.
New schema indexes are cool in 3.0.0 and range searches are implemented, but a) they work only on properties of nodes, no relationships, b) they don't allow full-text, fuzzy queries, and AFAIK regular expression matching does not use index.
Thanks for your suggestions!
WBR, Andrii
Andrii,
only the default config parameters have been removed not the functionality.
What is the actual use-case you are using the FTS indexes (on rels) for?
In 3.0 you can still use the start-clause but using stored procedures you can add nodes and relationship explicitly to indexes. And you can use similar procedures to query your indexes even more efficiently, e.g. by passing in start and end-nodes.
See (WIP): https://github.com/jexp/neo4j-apoc-procedures#manual-indexes
I'm using Neo4j 3 REST API and i have node named customer it has properties like name etc i need to get search results of name of customer eg i should get results for name "john" for my input "joan".how to implement fuzzy search to get my desired results.
Thanks in advance
First off, I want to make that you know that if you're using Neo4j 3.x that 3.x is currently in beta and isn't considered stable yet.
You have two options to implement a fuzzy search in Neo4j. You can use the legacy indexes to implement Lecene-based indexing. That should provide anything that Lucene can do, though you'd probably need to do a bit more work. You can also implement your own unmanaged extension which will allow you to use Lucene a bit more directly.
Perhaps the easier alternative is to use elasticsearch with Neo4j and have elasticsearch do your full-text indexing. You might take a look at the Neo4j and ElasticSearch page on neo4j.com. There they provide a link to a GitHub repository which is a plugin for Neo4j which automagically updates ElasticSearch with data from Neo4j and which provides and endpoint for querying your graph fuzzily. There is also a video tutorial on how to do this.
You will have to try using https://neo4j.com/developer/kb/how-to-perform-a-soundex-search/ which in this case will work. If your input is Joan you will not get John as the response, unless you just give jo as input in which you will get both. To get what you are expecting you will have to use the soundex search.
Stepping back a little, what is the problem you are trying to solve with fuzzy matching?
My experience has been that misspellings and typos are far less common than you might think, and humans prefer exact matches whenever possible. If there is no exact match (often just missing a space between words), that's a good time to use a spellchecker, and that's where the fuzzy matching should kick in.
In addition, your example would match "joan" to "john", but some synonyms like "joanie" would be more useful. If you have a big corpus of content to work with, you may be able to extract some relationships, using fuzzy & machine learning to identify "joanne" and "joni" as possible synonyms and then submit that to a human curator. "Jon" looks like a related name but it's not, while "jo" and even "nonie" may or may not be nicknames in these groupings.
Right now I'm thinking on possibility to create fuzzy search in my application over my Neo4j database.
The main criteria are: fuzzy search and performance.
What is the best way to achive these goals with a last version of Neo4j community edition ?
Fuzzy search is a tricky thing. Even in plain lucene (where you can do fuzzy search with lucene query strings) it is not recommended because it is quite expensive.
You can use that query syntax in Neo4j too when you indexed your data with a manual index.
The solution that most suggest is to rather go with auto-suggestion, i.e. match on the first few characters, present the options in the auto-complete box and then search by using the user selected strings.