I've noticed one of my dataflow jobs has produced output with what I could best describe as too many random bit flips. For example a year "2014" (as text) was written as "0007" or "2016" or "0052" or other textual values. In some cases the output line format is valid (which suggests something happened in processing) but few lines seems to have malformed formatting as well (e.g., "20141215-04-25" instead of something like "2014-12-25").
I'm occasionally re-running the jobs with the same code and different date range parameters, and for this specific dates range the job was completing successfully until about a week ago. I have been trying different machine configurations though (4 cpus and 1-cpu instances) and the problems seems to happen more with 4-cpu instances.
Does anybody know what could be leading to this?
Thanks,
G
When using 4-cpu instances, Dataflow runs multiple threads in a single Java process. Data corruption could happen if one of the transforms is thread-hostile, that is, not even separate instances of the class can be safely accessed by multiple threads. This typically happens when the class uses a static non-thread-safe member variable.
A thread safety issue in user code resulted in this type of corruption. This type of errors are likely to occur when using multi-core instances for compute.
Related
I have following question. I set up an camel -project to parse certain xml files. I have to selecting take out certain nodes from a file.
I have two files 246kb and 347kb in size. I am extracting a parent-child pair of 250 nodes in the above given example.
With the default factory here are the times. For the 246kb file respt 77secs and 106 secs. I wanted to improve the performance so switched to saxon and the times are as follows 47secs and 54secs. I was able to cut the time down by at least half.
Is it possible to cut the time further, any other factory or optimizations I can use will be appreciated.
I am using XpathBuilder to cut the xpaths out. here is an example. Is it possible to not to have to create XpathBuilder repeatedly, it seems like it has to be constructed for every xpath, I would have one instance and keep pumping the xpaths into it, maybe it will improve performance further.
return XPathBuilder.xpath(nodeXpath)
.saxon()
.namespace(Consts.XPATH_PREFIX, nameSpace)
.evaluate(exchange.getContext(), exchange.getIn().getBody(String.class), String.class);
Adding more details based on Michael's comments. So I am kind of joining them, will become clear with my example below. I am combining them into a json.
So here we go, Lets say we have following mappings for first and second path.
pData.tinf.rexd: bm:Document/bm:xxxxx/bm:PmtInf[{0}]/bm:ReqdExctnDt/text()
pData.tinf.pIdentifi.instId://bm:Document/bm:xxxxx/bm:PmtInf[{0}]/bm:CdtTrfTxInf[{1}]/bm:PmtId/bm:InstrId/text()
This would result in a json as below
pData:{
tinf: {
rexd: <value_from_xml>
}
pIdentifi:{
instId: <value_from_xml>
}
}
Hard to say without seeing your actual XPath expression, but given the file sizes and execution time my guess would be that you're doing a join which is being executed naively as a cartesian product, i.e. with O(n*m) performance. There is probably some way of reorganizing it to have logarithmic performance, but the devil is in the detail. Saxon-EE is quite good at optimizing join queries automatically; if not, there are often ways of doing it manually -- though XSLT gives you more options (e.g. using xsl:key or xsl:merge) than XPath does.
Actually I was able to bring the time down to 10 secs. I am using apache-camel. So I added threads there so that multiple files can be read in separate threads. Once the file was being read, it had serial operation to based on the length of the nodes that had to be traversed. I realized that it was not necessary to be serial here so introduced parrallelStream and that now gave it enough power. One thing to guard agains is not to have a proliferation of threads since that can degrade the performance. So I try to restrict the number of threads to twice or thrice the number of cores on the operating machine.
I am working on some fairly complex application that is making use of Dask framework, trying to increase the performance. To that end I am looking at the diagnostics dashboard. I have two use-cases. On first I have a 1GB parquet file split in 50 parts, and on second use case I have the first part of the above file, split over 5 parts, which is what used for the following charts:
The red node is called "memory:list" and I do not understand what it is.
When running the bigger input this seems to block the whole operation.
Finally this is what I see when I go inside those nodes:
I am not sure where I should start looking to understand what is generating this memory:list node, especially given how there is no stack button inside the task as it often happens. Any suggestions ?
Red nodes are in memory. So this computation has occurred, and the result is sitting in memory on some machine.
It looks like the type of the piece of data is a Python list object. Also, the name of the task is list-159..., so probably this is the result of calling the list Python function.
I'm trying to figure out the best or a reasonable approach to defining alerts in InfluxDB. For example, I might use the CPU batch tickscript that comes with telegraf. This could be setup as a global monitor/alert for all hosts being monitored by telegraf.
What is the approach when you want to deviate from the above setup for a host, ie instead of X% for a specific server we want to alert on Y%?
I'm happy that a distinct tickscript could be created for the custom values but how do I go about excluding the host from the original 'global' one?
This is a simple scenario but this needs to meet the needs of 10,000 hosts of which there will be 100s of exceptions and this will also encompass 10s/100s of global alert definitions.
I'm struggling to see how you could use the platform as the primary source of monitoring/alerting.
As said in the comments, you can use the sideload node to achieve that.
Say you want to ensure that your InfluxDB servers are not overloaded. You may want to allow 100 measurements by default. Only on one server, which happens to get a massive number of datapoints, you want to limit it to 10 (a value which is exceeded by the _internal database easily, but good for our example).
Given the following excerpt from a tick script
var data = stream
|from()
.database(db)
.retentionPolicy(rp)
.measurement(measurement)
.groupBy(groupBy)
.where(whereFilter)
|eval(lambda: "numMeasurements")
.as('value')
var customized = data
|sideload()
.source('file:///etc/kapacitor/customizations/demo/')
.order('hosts/host-{{.hostname}}.yaml')
.field('maxNumMeasurements',100)
|log()
var trigger = customized
|alert()
.crit(lambda: "value" > "maxNumMeasurements")
and the name of the server with the exception being influxdb and the file /etc/kapacitor/customizations/demo/hosts/host-influxdb.yaml looking as follows
maxNumMeasurements: 10
A critical alert will be triggered if value and hence numMeasurements will exceed 10 AND the hostname tag equals influxdb OR if value exceeds 100.
There is an example in the documentation handling scheduled downtimes using sideload
Furthermore, I have created an example available on github using docker-compose
Note that there is a caveat with the example: The alert flaps because of a second database dynamically generated. But it should be sufficient to show how to approach the problem.
What is the cost of using sideload nodes in terms of performance and computation if you have over 10 thousand servers?
Managing alerts manually directly in Chronograph/Kapacitor is not feasible for big number of custom alerts.
At AMMP Technologies we need to manage alerts per database, customer, customer_objects. The number can go into the 1000s. We've opted for a custom solution where keep a standard set of template tickscripts (not to be confused with Kapacitor templates), and we provide an interface to the user where only expose relevant variables. After that a service (written in python) combines the values for those variables with a tickscript and using the Kapacitor API deploys (updates, or deletes) the task on the Kapacitor server. This is then automated so that data for new customers/objects is combined with the templates and automatically deployed to Kapacitor.
You obviously need to design your tasks to be specific enough so that they don't overlap and generic enough so that it's not too much work to create tasks for every little thing.
I want to de-dupe a stream of data based on an ID in a windowed fashion. The stream we receive has and we want to remove data with matching within N-hour time windows. A straight-forward approach is to use an external key-store (BigTable or something similar) where we look-up for keys and write if required but our qps is extremely large making maintaining such a service pretty hard. The alternative approach I came up with was to groupBy within a timewindow so that all data for a user within a time-window falls within the same group and then, in each group, we use a separate key-store service where we look up for duplicates by the key. So, I have a few questions about this approach
[1] If I run a groupBy transform, is there any guarantee that each group will be processed in the same slave? If guaranteed, we can group by the userid and then within each group compare the sessionid for each user
[2] If it is feasible, my next question is to whether we can run such other services in each of the slave machines that run the job - in the example above, I would like to have a local Redis running which can then be used by each group to look up or write an ID too.
The idea seems off what Dataflow is supposed to do but I believe such use cases should be common - so if there is a better model to approach this problem, I am looking forward to that too. We essentially want to avoid external lookups as much as possible given the amount of data we have.
1) In the Dataflow model, there is no guarantee that the same machine will see all the groups across windows for the key. Imagine that a VM dies or new VMs are added and work is split across them for scaling.
2) Your welcome to run other services on the Dataflow VMs since they are general purpose but note that you will have to contend with resource requirements of the other applications on the host potentially causing out of memory issues.
Note that you may want to take a look at RemoveDuplicates and use that if it fits your usecase.
It also seems like you might want to be using session windows to dedupe elements. You would call:
PCollection<T> pc = ...;
PCollection<T> windowed_pc = pc.apply(
Window<T>into(Sessions.withGapDuration(Duration.standardMinutes(N hours))));
Each new element will keep extending the length of the window so it won't close until the gap closes. If you also apply an AfterCount speculative trigger of 1 with an AfterWatermark trigger on a downstream GroupByKey. The trigger would fire as soon as it could which would be once it has seen at least one element and then once more when the session closes. After the GroupByKey you would have a DoFn that filters out an element which isn't an early firing based upon the pane information ([3], [4]).
DoFn(T -> KV<session key, T>)
|
\|/
Window.into(Session window)
|
\|/
Group by key
|
\|/
DoFn(Filter based upon pane information)
It is sort of unclear from your description, can you provide more details?
Sorry for not being clear. I gave the setup you mentioned a try, except for the early and late firings part, and it is working on smaller samples. I have a couple of follow up questions, related to scaling this up. Also, I was hoping I could give you more information on what the exact scenario is.
So, we have incoming data stream, each item of which can be uniquely identified by their fields. We also know that duplicates occur pretty far apart and for now, we care about those within a 6 hour window. And regarding the volume of data, we have atleast 100K events every second, which span across a million different users - so within this 6 hour window, we could get a few billion events into the pipeline.
Given this background, my questions are
[1] For the sessioning to happen by key, I should run it on something like
PCollection<KV<key, T>> windowed_pc = pc.apply(
Window<KV<key,T>>into(Sessions.withGapDuration(Duration.standardMinutes(6 hours))));
where key is a combination of the 3 ids I had mentioned earlier. Based on the definition of Sessions, only if I run it on this KV would I be able to manage sessions per-key. This would mean that Dataflow would have too many open sessions at any given time waiting for them to close and I was worried if it would scale or I would run into any bottle-necks.
[2] Once I perform Sessioning as above, I have already removed the duplicates based on the firings since I will only care about the first firing in each session which already destroys duplicates. I no longer need the RemoveDuplicates transform which I found was a combination of (WithKeys, Combine.PerKey, Values) transforms in order, essentially performing the same operation. Is this the right assumption to make?
[3] If the solution in [1] going to be a problem, the alternative is to reduce the key for sessioning to be just user-id, session-id ignoring the sequence-id and then, running a RemoveDuplicates on top of each resulting window by sequence-id. This might reduce the number of open sessions but still would leave a lot of open sessions (#users * #sessions per user) which can easily run into millions. FWIW, I dont think we can session only by user-id since then the session might never close as different sessions for same user could keep coming in and also determining the session gap in this scenario becomes infeasible.
Hope my problem is a little more clear this time. Please let me know any of my approaches make the best use of Dataflow or if I am missing something.
Thanks
I tried out this solution at a larger scale and as long as I provide sufficient workers and disks, the pipeline scales well although I am seeing a different problem now.
After this sessionization, I run a Combine.perKey on the key and then perform a ParDo which looks into c.pane().getTiming() and only rejects anything other than an EARLY firing. I tried counting both EARLY and ONTIME firings in this ParDo and it looks like the ontime-panes are actually deduped more precisely than the early ones. I mean, the #early-firings still has some duplicates whereas the #ontime-firings is less than that and has more duplicates removed. Is there any reason this could happen? Also, is my approach towards deduping using a Combine+ParDo the right one or could I do something better?
events.apply(
WithKeys.<String, EventInfo>of(new SerializableFunction<EventInfo, String>() {
#Override
public java.lang.String apply(EventInfo input) {
return input.getUniqueKey();
}
})
)
.apply(
Window.named("sessioner").<KV<String, EventInfo>>into(
Sessions.withGapDuration(mSessionGap)
)
.triggering(
AfterWatermark.pastEndOfWindow()
.withEarlyFirings(AfterPane.elementCountAtLeast(1))
)
.withAllowedLateness(Duration.ZERO)
.accumulatingFiredPanes()
);
I have been struggling with parallel and async constructs in F# for the last couple days and not sure where to go at this point. I have been programming with F# for about 4 months - certainly no expert - and I currently have a series of calculations that are implemented in F# (asp.net 4.5) and are working correctly when executed sequentially. I am running the calculations on a multi-core server and since there are millions of inputs to perform the same calculation on, I am hoping to take advantage of parallelism to speed it up.
The calculations are extremely data parallel - basically the exact calculation on different input data. I have tried a number of different avenues and I continually run into the same issue - it seems as if the parallel looping never gets to the end of the input data set. I have tried TPL, ConcurrentQueues, Parallel.Array.map/iter and all the same result: the program starts out fine and then somewhere in the middle (indeterminate) it just hangs and never completes. For simplicity I actually removed the calculation from the program and I am just calling a print method, and Here is where the code is currently at:
let runParallel =
let ids = query {for c in db.CustTable do select c.id} |> Seq.take(5)
let customerInputArray= getAllObservations ids
Array.Parallel.iter(fun c -> testParallel c) customerInputArray
let key = System.Console.ReadKey()
0
A few points...
I limited the results above to only 5 just for debugging. The actual program does not apply the Take(5).
The testParallel method is just a printfn "test".
The customerInputArray is a complex data type. It is a tuple of lists that contain records. So I am pretty sure my problem must be there...but I added exception handling and no exception is getting raised, so have no idea how to go about finding the problem.
Any help is appreciated. Thanks in advance.
EDIT: Thanks for the advice...I think it is definitely deadlock. When I remove all of the printfn, sprintfn, and string concat operations, it completes. (of course, I need those things in there.)
Is printfn, sprintfn, and string ops not thread-safe?
Another EDIT: Iteration always stops on the last item..So if my input array has 15 items, the processing stops on item 14, or seems to never get to item 15. Then everything just hangs. Does not matter what the size of the input array is..Any ideas what can be causing this? I even switched over to Parallel.ForEach (instead of Array.Parallel) and same behavior.
Update on the situation and how I resolved this issue.
I was unable to upload code from my example due to my company's firewall policy, so in the end my question did not have enough details. I failed to mention that I was using a type provider which was important information in this situation. But here is what I figured out.
I am using the F# type provider for SQL Server and was passing around its Service Types which I suspect are not thread-safe. When I replaced the ServiceTypes with plain old F# Records, the code worked fine - no more deadlocks and everything completed without error.