I am unable to run my bundle install after I upgraded to yosemite, the contents of mkmf.log are as follows
/usr/local/opt/gcc46/bin/gcc-4.6 -o conftest
-I/Users/mac/.rvm/rubies/ruby-1.9.3-p547/include/ruby-1.9.1/x86_64-darwin12.4.0
-I/Users/mac/.rvm/rubies/ruby-1.9.3-p547/include/ruby-1.9.1/ruby/backward
-I/Users/mac/.rvm/rubies/ruby-1.9.3-p547/include/ruby-1.9.1 -I. -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl/include -O3 -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wimplicit-function-declaration -fno-common -pipe conftest.c -L. -L/Users/mac/.rvm/rubies/ruby-1.9.3-p547/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl/lib -L. -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl/lib -lruby.1.9.1 -lpthread -ldl -lobjc
and it seems like it is trying to use gcc-4.6 but when I do gcc -v it gives me this
Configured with:
--prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn) Target:
x86_64-apple-darwin14.0.0 Thread model: posix
I also tried doing a ln -s to link /usr/local/opt/gcc46/bin/gcc-4.6 but it was no help, I keep getting
/Users/mac/.rvm/rubies/ruby-1.9.3-p547/bin/ruby extconf.rb checking
if the C compiler accepts ... *** extconf.rb failed *** Could not
create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details.
You may need configuration options..
Any help would be really appreciated
try reinstall ruby with:
rvm get stable
rvm reinstall 1.9.3-p547
then bundle install
I had the same problem - turns out, I had to reinstall ruby in the newest version and build all gems pristine.
http://danielpuglisi.com/articles/2014/10/reinstall-ruby-after-upgrading-to-osx-yosemite
This solution worked perfectly, I removed all old versions that were listed in rbenv, then installed ruby 2.1.3 as described in the link, then used gem pristine --all, and I was good to go, no more annoying error messages.
The steps really depends on which one you are using, rbenv or rmv.
Related
I am working on starting a new project and I am getting an error I can't resolve after following the error's suggestions. Anybody out there know of any reason why Ruby 2.1.2 should not play well with Rails 4.2.6 when installing postgresql database?
I am getting this type of error:
Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.
/System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby extconf.rb
checking for pg_config... no
No pg_config... trying anyway. If building fails, please try again with
--with-pg-config=/path/to/pg_config
checking for libpq-fe.h... no
Can't find the 'libpq-fe.h header
extconf.rb failed
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
I checked the logs and it might as well have been in hieroglyphics:
"gcc -E -I/Users/danale/.rvm/rubies/ruby-2.3.3/include/ruby-2.3.0/x86_64-darwin16 -I/Users/danale/.rvm/rubies/ruby-2.3.3/include/ruby-2.3.0/ruby/backward -I/Users/danale/.rvm/rubies/ruby-2.3.3/include/ruby-2.3.0 -I. -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -fno-common -pipe conftest.c -o conftest.i"
conftest.c:3:10: fatal error: 'libpq-fe.h' file not found
#include <libpq-fe.h>
^
1 error generated.
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <libpq-fe.h>
/* end */
I since changed to Ruby version 2.1.2, hoping it was a compatibility issue, but it did not resolve the error. When I try to follow the suggestions of error:
Gem files will remain installed in /Users/danale/.rvm/gems/ruby-2.1.2/gems/pg-0.19.0 for inspection.
Results logged to /Users/danale/.rvm/gems/ruby-2.1.2/extensions/x86_64-darwin-16/2.1.0/pg-0.19.0/gem_make.out
danales-MacBook-Pro:Projects danale$ bundle exec spring binstub --all
Could not locate Gemfile or .bundle/ directory
danales-MacBook-Pro:Projects danale$ bundle install
Could not locate Gemfile
I get what you see above.
Daniel nailed this in the comments and I don't need credit for it, but if you're a Mac user you need to use:
brew install postgresql
This error means you don't have the headers to compile the native extensions in your machine. You may install them by doing:
brew install postgresql
ot then
gem install pg -- --with-pg-config='PG_CONFIG_PATH'
and then try to run bundle install again.
You may read more about this here.
Try this:
Go to System Settings => Open Software & Updates, you need to have both trusty-security & trusty-updates are enabled under the Updates tab, then reload your sources & see if you get the current versions.
After that open your terminal and run sudo apt-get update.
When I try to install Nokogiri using:
gem install nokogiri
I get this error:
ERROR: While executing gem ... (Errno::EACCES)
Permission denied # rb_sysopen - /usr/local/lib/ruby/gems/2.3.0/gems/nokogiri-1.6.8.1/.autotest
I ran both of these commands first:
gem update --system
xcode-select --install
Can anyone see what's wrong here?
If I run this using sudo I get:
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: /usr/local/lib/ruby/gems/2.3.0/gems/nokogiri-1.6.8.1/ext/nokogiri
/usr/local/opt/ruby/bin/ruby -r ./siteconf20161127-35515-164lnl6.rb extconf.rb
checking if the C compiler accepts ... *** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers.
and here's the log file:
"clang -o conftest -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0/x86_64-darwin14 -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0/ruby/backward -I/usr/local/Cellar/ruby/2.3.3/include/ruby-2.3.0 -I. -I/usr/local/opt/libyaml/include -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -fno-common -pipe conftest.c -L. -L/usr/local/Cellar/ruby/2.3.3/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L. -fstack-protector -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -lruby.2.3.0 -lpthread -ldl -lobjc "
Undefined symbols for architecture x86_64:
"start", referenced from:
implicit entry/start for main executable
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
You can try to do this:
gem install nokogiri -v '1.6.8.1' -- --use-system-libraries=true --with-xml2-include=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk/usr/include/libxml2
So this turned out to be a mix of permissions and file ownership. Once that was all sorted out I just had to rerun the gem install and close then reopen the terminal before running rails -v.
Building a new Rails app and getting a problem with nokogiri. Said to try gem install nokogiri -v '1.6.8.1' which fails with output below. I tried deleting Gemfile.lock and using the Gemfile from another app which has no problem—bundle install still fails. The original failure is bundle install which continues to work in other apps.
From console:
gem install nokogiri -v '1.6.8.1'
Building native extensions. This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
current directory: ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri
~/.rubies/ruby-2.3.1/bin/ruby -r ./siteconf20161008-60071-tmqi2l.rb extconf.rb
Ignoring byebug-6.0.2 because its extensions are not built. Try: gem pristine byebug --version 6.0.2
Ignoring byebug-3.4.0 because its extensions are not built. Try: gem pristine byebug --version 3.4.0
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv using --with-opt-* flags... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri/tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
unsigned short* in = (unsigned short*) inb;
^~~~~~~~~~~~~~~~~~~~~
encoding.c:815:27: warning: cast from 'unsigned char *' to 'unsigned short *' increases required alignment from 1 to 2 [-Wcast-align]
unsigned short* out = (unsigned short*) outb;
^~~~~~~~~~~~~~~~~~~~~~
4 warnings generated.
CC error.lo
CC parserInternals.lo
CC parser.lo
CC tree.lo
CC hash.lo
CC list.lo
CC xmlIO.lo
xmlIO.c:1450:52: error: use of undeclared identifier 'LZMA_OK'
ret = (__libxml2_xzclose((xzFile) context) == LZMA_OK ) ? 0 : -1;
^
1 error generated.
make[2]: *** [xmlIO.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=~/.rubies/ruby-2.3.1/bin/$(RUBY_BASE_NAME)
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:365:in `block (2 levels) in process_recipe'
from extconf.rb:258:in `block in chdir_for_build'
from extconf.rb:257:in `chdir'
from extconf.rb:257:in `chdir_for_build'
from extconf.rb:364:in `block in process_recipe'
from extconf.rb:263:in `tap'
from extconf.rb:263:in `process_recipe'
from extconf.rb:556:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/mkmf.log
extconf failed, exit code 1
Gem files will remain installed in ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1 for inspection.
Results logged to ~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/gem_make.out
mkmf.log:
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5: return 0;
6: }
/* end */
"clang -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe -Werror -c conftest.c"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */
"clang -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe -Wno-error=unused-command-line-argument-hard-error-in-future -Werror -c conftest.c"
error: unknown warning option '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean '-Werror=unused-command-line-argument'? [-Werror,-Wunknown-warning-option]
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */
have_header: checking for iconv.h... -------------------- yes
"clang -E -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -o conftest.i"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <iconv.h>
/* end */
--------------------
have_library: checking for gzdopen() in -lz... -------------------- yes
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lz -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <zlib.h>
4:
5: /*top*/
6: extern int t(void);
7: int main(int argc, char **argv)
8: {
9: if (argc > 1000000) {
10: printf("%p", &t);
11: }
12:
13: return 0;
14: }
15: int t(void) { void ((*volatile p)()); p = (void ((*)()))gzdopen; return !p; }
/* end */
--------------------
have_iconv?: checking for iconv using --with-opt-* flags... -------------------- yes
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -lpthread -ldl -lobjc "
Undefined symbols for architecture x86_64:
"_iconv", referenced from:
_main in conftest-d46614.o
"_iconv_open", referenced from:
_main in conftest-d46614.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <stdlib.h>
4: #include <iconv.h>
5:
6: int main(void)
7: {
8: iconv_t cd = iconv_open("", "");
9: iconv(cd, NULL, NULL, NULL, NULL);
10: return EXIT_SUCCESS;
11: }
/* end */
"clang -o conftest -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/x86_64-darwin16 -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0/ruby/backward -I~/.rubies/ruby-2.3.1/include/ruby-2.3.0 -I. -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/libyaml/include -I/usr/local/opt/gdbm/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT -O3 -fno-fast-math -ggdb3 -Wall -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wunused-variable -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration -Wdivision-by-zero -Wdeprecated-declarations -Wextra-tokens -pipe conftest.c -L. -L~/.rubies/ruby-2.3.1/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -L. -fstack-protector -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/gdbm/lib -lruby-static -framework CoreFoundation -liconv -lpthread -ldl -lobjc "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <stdlib.h>
4: #include <iconv.h>
5:
6: int main(void)
7: {
8: iconv_t cd = iconv_open("", "");
9: iconv(cd, NULL, NULL, NULL, NULL);
10: return EXIT_SUCCESS;
11: }
/* end */
--------------------
gem_make.out:
current directory: ~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri
~/.rubies/ruby-2.3.1/bin/ruby -r ./siteconf20161008-60071-tmqi2l.rb extconf.rb
Ignoring byebug-6.0.2 because its extensions are not built. Try: gem pristine byebug --version 6.0.2
Ignoring byebug-3.4.0 because its extensions are not built. Try: gem pristine byebug --version 3.4.0
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.1.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv using --with-opt-* flags... yes
************************************************************************
IMPORTANT NOTICE:
Building Nokogiri with a packaged version of libxml2-2.9.4.
Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:
gem install nokogiri -- --use-system-libraries
[--with-xml2-config=/path/to/xml2-config]
[--with-xslt-config=/path/to/xslt-config]
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.4.tar.gz into tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4... OK
Running 'configure' for libxml2 2.9.4... OK
Running 'compile' for libxml2 2.9.4... ERROR, review '~/.gem/ruby/2.3.1/gems/nokogiri-1.6.8.1/ext/nokogiri/tmp/x86_64-apple-darwin16.1.0/ports/libxml2/2.9.4/compile.log' to see what happened. Last lines are:
========================================================================
unsigned short* in = (unsigned short*) inb;
^~~~~~~~~~~~~~~~~~~~~
encoding.c:815:27: warning: cast from 'unsigned char *' to 'unsigned short *' increases required alignment from 1 to 2 [-Wcast-align]
unsigned short* out = (unsigned short*) outb;
^~~~~~~~~~~~~~~~~~~~~~
4 warnings generated.
CC error.lo
CC parserInternals.lo
CC parser.lo
CC tree.lo
CC hash.lo
CC list.lo
CC xmlIO.lo
xmlIO.c:1450:52: error: use of undeclared identifier 'LZMA_OK'
ret = (__libxml2_xzclose((xzFile) context) == LZMA_OK ) ? 0 : -1;
^
1 error generated.
make[2]: *** [xmlIO.lo] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=~/.rubies/ruby-2.3.1/bin/$(RUBY_BASE_NAME)
--help
--clean
--use-system-libraries
--enable-static
--disable-static
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--enable-cross-build
--disable-cross-build
~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:366:in `block in execute': Failed to complete compile task (RuntimeError)
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `chdir'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:337:in `execute'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:111:in `compile'
from ~/.rubies/ruby-2.3.1/lib/ruby/gems/2.3.0/gems/mini_portile2-2.1.0/lib/mini_portile2/mini_portile.rb:150:in `cook'
from extconf.rb:365:in `block (2 levels) in process_recipe'
from extconf.rb:258:in `block in chdir_for_build'
from extconf.rb:257:in `chdir'
from extconf.rb:257:in `chdir_for_build'
from extconf.rb:364:in `block in process_recipe'
from extconf.rb:263:in `tap'
from extconf.rb:263:in `process_recipe'
from extconf.rb:556:in `<main>'
To see why this extension failed to compile, please check the mkmf.log which can be found here:
~/.gem/ruby/2.3.1/extensions/x86_64-darwin-16/2.3.0-static/nokogiri-1.6.8.1/mkmf.log
extconf failed, exit code 1
Run this first:
xcode-select --install
Then rerun your bundle install
Reference: https://github.com/sparklemotion/nokogiri/issues/1483
I tried #the_basterd's recommendation. That didn't work, but the reference was good—thank you the_basterd. What worked from that reference was:
brew install libxml2
bundle config build.nokogiri --use-system-libraries --with-xml2-include=/usr/local/opt/libxml2/include/libxml2
Reference: https://github.com/sparklemotion/nokogiri/issues/1483
Later postings at that ref said that what I posted above "is strongly recommended against by the Nokogiri."
brew unlink xz; bundle install; brew link xz is preferred.
You can also encounter the same error message if you've downloaded XCode Tools but haven't yet agreed to the license.
From Terminal, run:
sudo xcodebuild -license
Enter your admin password, space through the agreement and type agree to accept. Run brew doctor and if necessary, brew update and you should be in good shape.
I ran into this issue with nokogiri-1.6.8.1 while using bundle install --path vendor/bundle to install directly into a project located within a Google Drive sync folder. The hangup seemed related to libxml2.
While reading through the GitHub issue referenced by #Greg and #the_basterd, I noticed that someone was having trouble installing into a Box sync folder. Moving my project folder to another location worked.
Not sure what the underlying problem is when installing to a sync folder, but I'd be interested to learn if anyone had any thoughts.
Haven't tested this with Dropbox, but perhaps that would cause problems, too.
I am working on a project, that needs therubyracer. When I do a bundle install I get the following error message when the bundler tries to install therubyracer.
Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.
/usr/bin/ruby extconf.rb
checking for main() in -lpthread... yes
checking for v8.h... yes
creating Makefile
make "DESTDIR="
g++ -I. -I/usr/include -I/usr/include/ruby/backward -I/usr/include -I. -D_FILE_OFFSET_BITS=64 -Wall -g -rdynamic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=i686 -mtune=atom -fasynchronous-unwind-tables -m32 -o init.o -c init.cc
g++ -I. -I/usr/include -I/usr/include/ruby/backward -I/usr/include -I. -D_FILE_OFFSET_BITS=64 -Wall -g -rdynamic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=i686 -mtune=atom -fasynchronous-unwind-tables -m32 -o signature.o -c signature.cc
g++ -I. -I/usr/include -I/usr/include/ruby/backward -I/usr/include -I. -D_FILE_OFFSET_BITS=64 -Wall -g -rdynamic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=i686 -mtune=atom -fasynchronous-unwind-tables -m32 -o exception.o -c exception.cc
g++ -I. -I/usr/include -I/usr/include/ruby/backward -I/usr/include -I. -D_FILE_OFFSET_BITS=64 -Wall -g -rdynamic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=i686 -mtune=atom -fasynchronous-unwind-tables -m32 -o primitive.o -c primitive.cc
g++ -I. -I/usr/include -I/usr/include/ruby/backward -I/usr/include -I. -D_FILE_OFFSET_BITS=64 -Wall -g -rdynamic -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=i686 -mtune=atom -fasynchronous-unwind-tables -m32 -o context.o -c context.cc
In file included from context.cc:1:0:
context.cc: In static member function ‘static VALUE rr::Context::SetEmbedderData(VALUE, VALUE, VALUE)’:
context.cc:81:23: error: ‘class v8::Context’ has no member named ‘SetEmbedderData’
Void(Context(self)->SetEmbedderData(NUM2INT(index), Value(data)));
^
rr.h:33:20: note: in definition of macro ‘Void’
#define Void(expr) expr; return Qnil;
^
context.cc: In static member function ‘static VALUE rr::Context::GetEmbedderData(VALUE, VALUE)’:
context.cc:85:23: error: ‘class v8::Context’ has no member named ‘GetEmbedderData’
Void(Context(self)->GetEmbedderData(NUM2INT(index)));
^
rr.h:33:20: note: in definition of macro ‘Void’
#define Void(expr) expr; return Qnil;
^
make: *** [context.o] Error 1
Gem files will remain installed in /home/anupam/.gem/ruby/gems/therubyracer-0.12.1 for inspection.
Results logged to /home/anupam/.gem/ruby/gems/therubyracer-0.12.1/ext/v8/gem_make.out
An error occurred while installing therubyracer (0.12.1), and Bundler cannot continue.
Make sure that `gem install therubyracer -v '0.12.1'` succeeds before bundling.
When I run gem install therubyracer -v '0.12.1' or without the version, it still fails.
I am new to ruby so I don't really understand what is going on or why it is failing.
Any help on this is much appreciated.
I had the same problem with Fedora 24 x64 and the sudo dnf -y install gcc-c++ resolved my issue
I removed all gems.
Uninstalled ruby
Reinstalled ruby ruby-devel
Installed ruby and ruby-devel and install therubyracer and libv8 using yum NOT gem.
Then I ran bundle install and gem used the already installed gems that yum installed.
Thank god for fedora maintainers! You guys are awesome
I know it sounds dumb but I had the exact problem and it seems I lacked the package gcc-c++. Thought already had them. yum install gcc-c++ did the trick
I keep getting these errors:
Error running 'make ', please read /Users/jason*/.rvm/log/ruby-1.9.2-p320/make.log
There has been an error while running make. Halting the installation.
ls: /Users/jason*/.rvm/rubies/*/bin/ruby: No such file or directory
I've tried installing readline and making sure I have the latest GCC version.
This is the error log.
/usr/bin/gcc-4.2 -dynamic -bundle -o ../../../.ext/x86_64-darwin11.3.0/racc/cparse.bundle cparse.o -L. -L../../.. -L/Users/jasonvdm/.rvm/usr/lib -L. -L/usr/local/lib -Wl,-undefined,dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-flat_namespace -lruby.1.9.1 -lpthread -ldl -lobjc
compiling readline
/usr/bin/gcc-4.2 -I. -I../../.ext/include/x86_64-darwin11.3.0 -I../.././include -I../.././ext/readline -DRUBY_EXTCONF_H=\"extconf.h\" -I/Users/jasonvdm/.rvm/usr/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -fno-common -O3 -ggdb -Wextra -Wno-unused-parameter -Wno-parentheses -Wpointer-arith -Wwrite-strings -Wno-missing-field-initializers -Wshorten-64-to-32 -Wno-long-long -fno-common -pipe -o readline.o -c readline.c
readline.c: In function ‘username_completion_proc_call’:
readline.c:1386: error: ‘username_completion_function’ undeclared (first use in this function)
readline.c:1386: error: (Each undeclared identifier is reported only once
readline.c:1386: error: for each function it appears in.)
make[1]: *** [readline.o] Error 1
make: *** [mkmain.sh] Error 1
Are you compiling Readline from source? It might be less painful to compile and install Readline via Homebrew, assuming that you have at least one working version of Ruby on your system.
Once you've done that, you can try the RVM install of Ruby 1.9.2 again, and it should skip the Readline compilation step.
Updated in response to comment:
So you are using a Homebrew installed Readline. In that case, find out where the new (less broken) Readline libs are installed, and try passing the location of that version of Readline to the RVM install process. Something like:
rvm install ruby-1.9.2-p320 -C
--with-readline-dir=/usr/local/Cellar/readline/6.2.1
Clearly, your directory will be slightly different the one in my example.
If you're using RVM, read the procedures in this question and answers.
You'd better install the readline library with rvm pkg command.