pattern recognition in a time series - time-series

I understand that the question I am asking seem the be somewhat related to another question which has been asked already here and here.
But I feel that this is an entirely different question. (I have also submitted this question on the dsp.stackexchange)
I have a huge (over 100K data points) time series data of the position (x, y coordinates) of an element in space. This element is vibrating randomly, and both amplitude and the frequency of vibration is random. I want to look at the events which are similar and see if there is any pattern in those events, are they periodic or related somehow.
I am working on a biological problem and have very little knowledge about signal processing. I can provide more details. Any help would be really appreciated.

One of the areas of the research on time series patterns is called Motif Detection or Discovey, some use association strategies, other are probabilistic.
Some links here http://dl.acm.org/results.cfm?query=motif+discovery&Go.x=5&Go.y=12

Related

In ML, using RNN for an NLP project, is it necessary for DATA redundancy?

Is it necessary to repeat similar template data... Like the meaning and context is the same, but the smaller details vary. If I remove these redundancies, the dataset is very small (size in hundreds) but if the data like these are included, it easily crosses thousands. Which is the right approach?
SAMPLE DATA
This is acutally not a question suited for stack overflow but I'll answer anyways:
You have to think about how the emails (or what ever your data this is) will look in real-life usage: Do you want to detect any kind of spam or just similiar to what your sample data shows? If the first is the case, your dataset is just not suited for this problem since there are not enough various data samples. When you think about it, every of the senteces are exactly the same because the company name isn't really valueable information and will probably not be learned as a feature by your RNN. So the information is almost the same. And since every input sample will run through the network multiple times (once each epoch) it doesnt really help having almost the same sample multiple times.
So you shouldnt have one kind of almost identical data samples dominating your dataset.
But as I said: When you primarily want to filter out "Dear customer, we wish you a ..." you can try it with this dataset but you wouldnt really need an RNN to detect that. If you want to detect all kind of spam, you should search for a new dataset since ~100 unique samples are not enough. I hope that was helpful!

How to track Fast Moving Objects?

I'm trying to create an application that will be able to track rapidly moving objects in video/camera feed, however have not found any CV/DL solution that is good enough. Can you recommend any computer vision solution for tracking fast moving objects on regular laptop computer and web cam? A demo app would be ideal.
For example see this video where the tracking is done in hardware (I'm looking for software solution) : https://www.youtube.com/watch?v=qn5YQVvW-hQ
Target tracking is a very difficult problem. In target tracking you will have two main issues: the motion uncertainty problem, and the origin uncertainty problem. The first one refers to the way you model object motion so you can predict its future state, and the second refers to the issue of data association(what measurement corresponds to what track, and the literature is filled with scientific ways in which this issue can be approached).
Before you can come up with a solution to your problem you will have to answer some questions yourself, regarding the tracking problem you want to solve. For example: what are the values that you what to track(this will define your state vector), how are those values related to one another, are you trying to perform single object tracking or multiple object tracking, how are the objects moving( do they have a relatively constant acceleration or velocity ) or not, do objects make turns, can objects also be occluded or not and so on.
The Kalman Filter is good solution to predict the next state of your system (once you have identified your process model). A deep learning alternative to the Kalman filter is the so called Deep Kalman Filter which essentially is used to do the same thing. In case your process or measurement models are not linear, you will have to linearize them before predicting the next state. Some solutions that deal with non-linear process or measurement models are the Extended Kalman Filter (EKF) or Unscented Kalman Filter (UKF).
Now related to fast moving objects, an idea you can use is to have a larger covariance matrix since the objects can move a lot more if they are fast, so the search space for the correct association has to be a bit larger. Additionally you can use multiple motion models in case your motion model cannot be satisfied with only one model.
In case of occlusions I will leave you this stack overflow thread, where I have given an answer covering more details regarding occlusion handling in case of tracking. I have added some references for you to read. You will have to provide more details in your question, if you would like to receive more information regarding a solution (for example you should define fast moving objects with respect to camera frame rate).
I personally do not think there is a silver bullet solution for the tracking problem, I prefer to tailor a solution to the problem I am trying to solve.
The tracking problem is complicated. It is also more in the realm of control systems than computer vision. It would be also helpful to know more about your situation, as the performance of the chosen method pretty much depends on your problem constraints. Are you interested in real-time tracking? Are you trying to reconstruct an existing trajectory? Are there multiple targets? Just one? Are the physical properties of the targets (i.e. velocity, direction, acceleration) constant?
One of the most basic tracking methods is implemented by a Linear Dynamic System (LDS) description, in concrete, a discrete implementation, since we’re working with discrete frames of information. This method is purely based on physics, and its prediction is very sensitive. Depending on your application, the error rate could be acceptable… or not.
A more robust solution is Kalman’s Filter, and it is pretty much the go-to answer when tracking is needed. It implements prediction based on all the measurements obtained so far during the model's lifetime. It mainly works on constant-based measurements (velocity and acceleration) although it can be extended to handle non-constant models. If you are working with targets that won't exhibit a drastic change in their velocity, this is what you (probably) should implement.
I'm sorry I can't provide you with more, but the topic is pretty extensive and, admittedly, the details are beyond my area of expertise. Hopefully, this info should give you a little bit of context for finding a solution.
The problem of tracking fast-moving objects (FMO) is a known research topic in computer vision. FMOs are defined as objects which move over a distance larger than their size in one video frame. The solutions which have been proposed use classical image processing and energy minimization to establish their trajectories and sharp appearance.
If you need a demo app, I would suggest this GitHub repository: https://github.com/rozumden/fmo-cpp-demo. The demo is written in OpenCV/C++ and runs in real-time. The authors also provide a mobile app version, which is still in testing mode. Using this demo app you can track any fast moving objects in real-time without even providing an object model. However, if you provide object size in real-world units, the app can also estimate object speed.
A more sophisticated algorithm is open-sourced here: https://github.com/rozumden/deblatting_python, written in Python and PyTorch for speed-up. The repository contains a solution to the deblatting (deblurring and matting) problem, exactly what happens when a Fast Moving Object appears in front of a camera.

Emotion detection through voice/speech solution for Mobile and web [closed]

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I have been searching for emotion detection through voice/speech solution on mobile (iOS) and web.
I found Moodies-iOS and Vokaturi solution, but they are not free.
I couldn't find any open source or paid version software available to integrate in my app and test the solution.
Could someone share if you have any info on this related.
Is there any OPEN SOURCE for iOS for Emotion analysis and detection through Voice/Speech, Please let me know.
As a former research in affective computing, I highly doubt you can find a ready-for-use iOS open source solution for emotion recognition from speech. The main reason is that it is a damn difficult task that requires a lot of research and a lot of proper data to train models. That is why companies like BeyondVerbal and Vokaturi do not share their models with others. Thus, you will be very lucky if you can find anything in open source, I am not even talking about iOS solutions.
I am aware about some toolkits you can use for this task (namely, the openEAR toolkit), but to build something working from it, you need an expert knowledge in the field and data to train models. A comprehensive list of databases can be found here: http://emotion-research.net/wiki/Databases. A lot of them a freely available.
As Dmytro Prylipko said it is very doubtful that there is any open-source lib for emotion recognition from speech.
You may write your own solution. It is not hard. Trouble is, as mentioned before, proper training and/or trasholding takes a lot of time and nerves.
I will give you a short theory how you should begin writing the algo, but training and so on is on you.
First big trouble is that different people differently relay their emotions vocally.
For example: one shocked person will to their shock respond with overexclaimed sentence while another will "freeze" and their response would sound very flat (almost robot-like).
Therefore you will need a lot of templates from which to learn how to classify your input speech by emotions.
You can remove some difficulties by using context recognition along with voice prosody.
That is what I'd advise you to do.
First make an algorithm that will use speech-recognized text to put it into emotion context. E.g. you can use specific words and phrases that people use when expressing different emotions.
That is easily done. You may use a neural network or simple branching or whatever.
So you will be able to recognize whether person is thankful and surprised at the same time by combining context recognition and emotions from prosody.
Now, to recognize the emotion from prosody you have to get prosody parameters and some others.
For example, some emotions may be recognized by looking at duration of particular words in a sentence.
So you have the sentence and the text of that sentence. You know that the speed of normal speech is approximately 200 words per minute. Knowing this and number of words in the sentence you can see how fast is someone talking. Then you measure the duration of each word and get its speed. By knowing how fast is the speech and how long is the word you can get normalized ratios that can be used for classifications in order to determine the closest guess of the emotion.
For instance, when someone is presented with a present that he/she likes very much, the "thank you" will sound pretty long. It will also be of higher pitch than that person's usual speech.
So the next step would be to get the average pitch for each word to see the relation between them. So you will be able to see how the sentence prosody modulates. From lower to higher, or vice versa.
Also, how prosody changes inside the phrases within the sentence.
You may go about this by comparing curves of known emotion directly, or you may use aproximation to get coefficients from the prosody curve vector. The square function does good for normal speech prosody (with no particular emotions in). So some higher order polynomial should do. So, you can get coefficients of the polynom and use them to get what emotion should whole sentence or phrase relay.
The same goes for individual words within the sentence. You get the pitch for each phoneme or syllable or just the pitch curve for e.g. every 20 ms of the word. Then you either calculate few coefficients to aproximate the polynom you decided is good enough for you, or you take the whole curve and normalize it to e.g. 30 points to use it with recognition.
To compare curves directly you may use gesture recognition algorithm by Oleg Dopertchouk:
http://www.gamedev.net/reference/articles/article2039.asp
I tried it on pitch curves of melodies, it works just fine.
The trouble is, you need a database of speech with context and emotion with clear manually done classification to give your algo something to compare with.
If you use polynomials instead of whole curves, you can do some recognition by using thresholds on coefficients, but results will be a bit shaky. Only real excuse for using coeffs at all is that you do not need to know how long is the word in question. I.e. the same polynom should work on a word with 2 phonemes and on one with 5. (should work)
You see, a theory is nice and easy. Use speech recognition, measure speech rate, and duration of each word, construct pitch curve for whole phrase and pitch curve for each word using FFT, do some comparison between ready database and the input. And walla, emotion recognized.
But where will you find the database with word curves marked with emotions.
For example, you would need for each emotion at least one pitch curve for words with different number of phonemes. At least one, because it is important whether the word starts with vowel or ends with one, or simply someone differently relays the same emotion even if the curve represents the same word.
OK, so you can say that you can make one. Where would you find recorded samples to make your curves or calculate coeffs? Hm, perhaps a recording of some drama. Not bad idea, but the acted emotions aren't the same as the natural ones.
It is a big job to teach a machine such a thing.
Oh, yeah, I almost forgot, emotions aren't only, or sometimes at all transfered using pitch changes, sometimes it's only the way in which the word is being pronounced.
So, for some cases, you would probably need LPC or some other coefficients showing some more info on how phonemes in the word sounds. Or you would need to take in view other harmonics from FFT, not just the one representing the pitch of excitation train.
The best that you can do without following my hints and developing your own algo, is to use NLTK (natural language toolkit) to develop a statistical speech (emotionally rich) model and use algorithms from there (perhaps a bit modified) to try to get to the emotion in question.
But I fear it would be a greater job than going from zero. As far as I know NLTK doesn't support emotions. Just normal speech prosody.
You may try to integrate some things I wrote about into Sphinx, to develop emotion based speech models and introduce emotion recognition directly into sphinxes VR algorithm.
If you really need this, I advise you to learn enough DSP to write your own algo, then pay someone to make you initial database from audiobooks, radio dramas and similar stuff (using a tool you provide).
After your algo starts to work reasonably well, implement autolearning by giving users an option to correct the algo's wrong guesses. After some time you will get 90% reliable algo to recognize emotions from speech.

People Detection and Tracking

I want to do pedestrian detection and tracking.
Input: Video Stream from CCTV camera.
Output:
#(no of) people going from left to right
# people going from right to left
# No. of people in the middle
What have i done so far:
For pedestrian detection I am using HOG and SVM. The detection is decent with high false positive rate. And its very slow as i am running in android platform.
Question:
After detection how to do I calculate the required values listed above. Can anyone tell me what is the tracking algorithm I have to use and any good algorithm for pedestrian detection.
Or should I use tracking algorithm? Is there a way to do without it?
Any references to codes/blogs/technical papers is appreciated.
Platform: C++ & OpenCV / android.
--Thanks
This is somehow close to a research problem.
You may want to have a look to this website which gathers a lot of references.
In particular, the work done by the group from Oxford present therein is pretty close to what you are doing, since their are using HOG for detection. (That work has been extremely illuminating for me).
EPFL and Julich have as well work done in the field.
You may also want to give a look to this review which describes several detection/tracking techniques, often involving variants of the HOG algorithm.
Along with #Acorbe response, I suggest the publications section of this (archived) website.
A recent work at the end of last year also released a code base here:
https://bitbucket.org/rodrigob/doppia
There have also been earlier pedestrian detector works that have released code as well:
https://sites.google.com/site/wujx2001/home/c4
http://www.vision.caltech.edu/Image_Datasets/CaltechPedestrians
The best accurate way is to use tracking algorithm instead of statistic appearance counting of incoming people and detection occurred left right and middle..
You can use extended statistical models.. That produce how many inputs producing one of the outputs and back validate from output detection the input.
My experience is that tracking leads to better results than approach above. But is also little bit complicated. We talk about multi target tracking when the critical is match detection with tracked model which should be update based on detection. If tracking is matched with wrong model. The problems are there.
Here on youtube I developed some multi target tracker by simple LBP people detector, but multi model and kalman filter for tracking. Both capabilities are available in opencv. You need to when something is detected create new kalman filter for each object and update in case you match same detection. Predict in case detection is not here in frame and also remove the Kalman i it is not necessary to track any more.
1 Detect
2 Match detections with kalmans, hungarian algorithm and l2 norm. (for example)
3 Lot of work. Decide if kalman shoudl be established, remove, update, or results is not detected and should be predicted. This is lot of work here.
Pure statistic approach is less accurate, second one is for experience people at least one moth of coding and 3 month of tuning.. If you need to be faster and your resources are quite limited. You can by smart statistic achieve your results by pure detection much faster and little bit less accurate. People are judge the image and video tracking even multi target tracking is capable to beat human. Try to count and register each person in video and count exits point. You are not able to do this in some number of people. It is really repents on, what you want, application, customer you have, and results you show to customers. If this is 4 numbers income, left, right, middle and your error is 20 percent is still much more than one bored small paid guard should achieved by all day long counting..
https://www.youtube.com/watch?v=d-RCKfVjFI4
You can find on my BLOG Some dataset for people detection and car detection on my blog same as script for learning ideas, tutorials and tracking examples..
Opencv blog tutorials code and ideas
You can use KLT for this purpose as this will tell you the flow of person traveling from left to right then you can compute that by computing line length which in given example is drawn using cv2.line you can use input parameters of this functions to compute your case, little math involved. if there is a flow of pixels from left to right this is case 1 or right to left then case 3 and for no flow case 2. Or you can use this basic tutorial to track object movement. LINK

Image processing using genetic algorithm

i want to see application of GA in image processing. I was not getting how to write the fitness function for any image. Say I have a image in grey scale,which is not very clear, now if I keep matching my generated solution with this picture value then how is my solution going to be better like better clearity increased contrast/brightness etc.
My favorite example of Genetic Algorithms in image processing is:
http://rogeralsing.com/2008/12/07/genetic-programming-evolution-of-mona-lisa/
It evolves random shapes into something that resembles the Mona Lisa. You can actually try it and play with it here:
http://www.nihilogic.dk/labs/evolving-images/
Your question isn't very clear. One thing that is extremely important with a genetic algorithm though, is to measure how 'good' it is. In the Mona Lisa example, goodness can be measured relatively easily, it's the proximity to the actual Mona Lisa. In your case, it sounds like you are trying to improve a pictures quality somehow with no way of measuring it's 'goodness'.
You should build a function that evaluates the pool of solutions and scores each one. Then breed the good quality solutions with each other. Crucial to all this though, really is, writing an evaluation/scoring function so you know which ones are good.
For aerodynamics, a pool of shapes can be scored on weight, drag, lift etc. For network design, layouts can be scored on latency, physical cost, interference etc. If you explain your problem in more detail we could probably help you come up with a set of metrics to score your solutions on.

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