Failing to install Nokogiri gem - ruby-on-rails

Question

I'm working on a rails app that allows for image attachments to each use account. I'm using paperclip and amazon web services:
gem 'paperclip'
gem 'aws-sdk'
When I run bundle install, I get this message:
extconf failed, exit code 1
Gem files will remain installed in /usr/local/rvm/gems/ruby-2.1.2/gems/nokogiri-1.6.5 for inspection.
Results logged to /usr/local/rvm/gems/ruby-2.1.2/extensions/x86_64-darwin-13/2.1.0-static/nokogiri-1.6.5/gem_make.out
An error occurred while installing nokogiri (1.6.5), and Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.6.5'` succeeds before bundling.
When I try running 'gem install nokogiri', I get this message:
extconf failed, exit code 1
Gem files will remain installed in /usr/local/rvm/gems/ruby-2.1.2/gems/nokogiri-1.6.5 for inspection.
Results logged to /usr/local/rvm/gems/ruby-2.1.2/extensions/x86_64-darwin-13/2.1.0-static/nokogiri-1.6.5/gem_make.out
My OS is Mac OS X 10.9.4 Mavericks. What's going on here? How can I get nokogiri to install and behave properly?
Full stack trace:
Building native extensions with: '--use-system-libraries'
This could take a while...
ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.
/usr/local/rvm/rubies/ruby-2.1.2/bin/ruby extconf.rb --use-system-libraries
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... yes
Building nokogiri using system libraries.
libxml2 version 2.6.21 or later is required!
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers. Check the mkmf.log file for more details. You may
need configuration options.
Provided configuration options:
--with-opt-dir
--without-opt-dir
--with-opt-include
--without-opt-include=${opt-dir}/include
--with-opt-lib
--without-opt-lib=${opt-dir}/lib
--with-make-prog
--without-make-prog
--srcdir=.
--curdir
--ruby=/usr/local/rvm/rubies/ruby-2.1.2/bin/ruby
--help
--clean
--use-system-libraries
--with-zlib-dir
--without-zlib-dir
--with-zlib-include
--without-zlib-include=${zlib-dir}/include
--with-zlib-lib
--without-zlib-lib=${zlib-dir}/lib
--with-xml2-dir
--without-xml2-dir
--with-xml2-include
--without-xml2-include=${xml2-dir}/include
--with-xml2-lib
--without-xml2-lib=${xml2-dir}/lib
--with-libxml-2.0-config
--without-libxml-2.0-config
--with-pkg-config
--without-pkg-config
--with-xslt-dir
--without-xslt-dir
--with-xslt-include
--without-xslt-include=${xslt-dir}/include
--with-xslt-lib
--without-xslt-lib=${xslt-dir}/lib
--with-libxslt-config
--without-libxslt-config
--with-exslt-dir
--without-exslt-dir
--with-exslt-include
--without-exslt-include=${exslt-dir}/include
--with-exslt-lib
--without-exslt-lib=${exslt-dir}/lib
--with-libexslt-config
--without-libexslt-config
extconf failed, exit code 1
Gem files will remain installed in /usr/local/rvm/gems/ruby-2.1.2/gems/nokogiri-1.6.5 for inspection.
Results logged to /usr/local/rvm/gems/ruby-2.1.2/extensions/x86_64-darwin-13/2.1.0-static/nokogiri-1.6.5/gem_make.out

Answer 1

This works like a charm!
gem install nokogiri -- --use-system-libraries=true --with-xml2-include=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/usr/include/libxml2
https://stackoverflow.com/a/24511149

Answer 2

On Ubuntu, try installing the following dependencies:
sudo apt-get install gcc ruby-dev libxslt-dev libxml2-dev zlib1g-dev

Answer 3

Have you tried gem install nokogiri -v 1.6.5 -- --use-system-libraries?Most nokogiri errors are to do with libxml2, libxslt or libiconv config.
Nokogiri docs should give you more instructions. If the solution doesn't work, you may want to post full stack trace so others can help more.

Answer 4

after upgrading to Rails 4.2.4 (which inculdes Nokogiri 1.6.6.2) on Ubuntu 14.04 (I'm using RVM) I needed to do this:
sudo apt-get install libgmp-dev
or
sudo apt-get install libgmp3-dev

Answer 5

As per the nokogiri installation instruction installing,
sudo apt-get install zlib1g-dev
solved the issue for me.

Answer 6

Since the OP was referencing bundle install which I happened to use as well I think it is worth pointing out the Installing Nokogiri page which eventually revealed the most elegant solution (which worked for me also on Mac OS X 10.8.5):
bundle config build.nokogiri --use-system-libraries
bundle install
This instructs bundler to install nokogiri as in the answers of #kasperite

Answer 7

I solved this by installing the xcode dependencies that Nokogiri needs to be installed:
xcode-select --install
After that run bundle install again and it should work.

Answer 8

Package that did it:
apt-get install libghc-zlib-dev
Other possible candidate:
zlib1g-dev on 12.04
found it here

Answer 9

To take from dylanjhunt's awesome answer on Github, just in case anyone hasn't tried it,
Just to add to this, I was having a very similar issue that was
resolved by updating dev tools.
xcode-select --install
Hoping someone sees this that had not tried doing this yet and it
helps.

Answer 10

I didn't get the same error message as you, but I wanted to note what I finally found as the extraordinarily simple solution for installing nokogiri on Ubuntu:
Turns out the nokogiri build process depends on patch.
Run: sudo apt-get install patch
I was working on a VM (a vagrant box, actually), which is why I didn't already have patch installed.
The error I got (after a lot of other stuff that looked like an error but was actually just a warning) was:
Extracting libxml2-2.9.2.tar.gz into tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.2... OK
Running patch with /var/lib/gems/1.9.1/gems/nokogiri-1.6.6.2/ports/patches/libxml2/0001-Revert-Missing-initialization-for-the-catalog-module.patch...
Running 'patch' for libxml2 2.9.2... ERROR, review '/var/lib/gems/1.9.1/gems/nokogiri-1.6.6.2/ext/nokogiri/tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.2/patch.log' to see what happened.
I've deleted the log by now (the above was in my terminal session), but the patch.log file referenced above was absurdly simple; it just said something like patch not found.
Boy did I feel silly for all the digging around I did installing libraries trying to fix it! :)

Answer 11

install gcc first
in *buntu :
apt-get install gcc
after that U may requer most dev libs, such as
libxml2 / zlib / etc.
see build log(path in my case) :
/var/lib/gems/2.3.0/extensions/x86_64-linux/2.3.0/nokogiri-1.6.8.1/mkmf.log
for string like - fatal error: zlib.h: No such file or directory

Answer 12

I had the same issue earlier today. I had updated my xcode and had not
agreed to the terms yet. Running sudo xcodebuild -license and agreeing
got my bundle working again.
https://github.com/CocoaPods/CocoaPods/issues/1727#issuecomment-194568428