How to upgrade docker container after its image changed - docker

Let's say I have pulled the official mysql:5.6.21 image.
I have deployed this image by creating several docker containers.
These containers have been running for some time until MySQL 5.6.22 is released. The official image of mysql:5.6 gets updated with the new release, but my containers still run 5.6.21.
How do I propagate the changes in the image (i.e. upgrade MySQL distro) to all my existing containers? What is the proper Docker way of doing this?

After evaluating the answers and studying the topic I'd like to summarize.
The Docker way to upgrade containers seems to be the following:
Application containers should not store application data. This way you can replace app container with its newer version at any time by executing something like this:
docker pull mysql
docker stop my-mysql-container
docker rm my-mysql-container
docker run --name=my-mysql-container --restart=always \
-e MYSQL_ROOT_PASSWORD=mypwd -v /my/data/dir:/var/lib/mysql -d mysql
You can store data either on host (in directory mounted as volume) or in special data-only container(s). Read more about it
About volumes (Docker docs)
Tiny Docker Pieces, Loosely Joined (by Tom Offermann)
How to deal with persistent storage (e.g. databases) in Docker (Stack Overflow question)
Upgrading applications (eg. with yum/apt-get upgrade) within containers is considered to be an anti-pattern. Application containers are supposed to be immutable, which shall guarantee reproducible behavior. Some official application images (mysql:5.6 in particular) are not even designed to self-update (apt-get upgrade won't work).
I'd like to thank everybody who gave their answers, so we could see all different approaches.

I don't like mounting volumes as a link to a host directory, so I came up with a pattern for upgrading docker containers with entirely docker managed containers. Creating a new docker container with --volumes-from <container> will give the new container with the updated images shared ownership of docker managed volumes.
docker pull mysql
docker create --volumes-from my_mysql_container [...] --name my_mysql_container_tmp mysql
By not immediately removing the original my_mysql_container yet, you have the ability to revert back to the known working container if the upgraded container doesn't have the right data, or fails a sanity test.
At this point, I'll usually run whatever backup scripts I have for the container to give myself a safety net in case something goes wrong
docker stop my_mysql_container
docker start my_mysql_container_tmp
Now you have the opportunity to make sure the data you expect to be in the new container is there and run a sanity check.
docker rm my_mysql_container
docker rename my_mysql_container_tmp my_mysql_container
The docker volumes will stick around so long as any container is using them, so you can delete the original container safely. Once the original container is removed, the new container can assume the namesake of the original to make everything as pretty as it was to begin.
There are two major advantages to using this pattern for upgrading docker containers. Firstly, it eliminates the need to mount volumes to host directories by allowing volumes to be directly transferred to an upgraded containers. Secondly, you are never in a position where there isn't a working docker container; so if the upgrade fails, you can easily revert to how it was working before by spinning up the original docker container again.

Just for providing a more general (not mysql specific) answer...
In short
Synchronize with service image registry (https://docs.docker.com/compose/compose-file/#image):
docker-compose pull
Recreate container if docker-compose file or image have changed:
docker-compose up -d
Background
Container image management is one of the reason for using docker-compose
(see https://docs.docker.com/compose/reference/up/)
If there are existing containers for a service, and the service’s configuration or image was changed after the container’s creation, docker-compose up picks up the changes by stopping and recreating the containers (preserving mounted volumes). To prevent Compose from picking up changes, use the --no-recreate flag.
Data management aspect being also covered by docker-compose through mounted external "volumes" (See https://docs.docker.com/compose/compose-file/#volumes) or data container.
This leaves potential backward compatibility and data migration issues untouched, but these are "applicative" issues, not Docker specific, which have to be checked against release notes and tests...

I would like to add that if you want to do this process automatically (download, stop and restart a new container with the same settings as described by #Yaroslav) you can use WatchTower. A program that auto updates your containers when they are changed https://github.com/v2tec/watchtower

Consider for this answers:
The database name is app_schema
The container name is app_db
The root password is root123
How to update MySQL when storing application data inside the container
This is considered a bad practice, because if you lose the container, you will lose the data. Although it is a bad practice, here is a possible way to do it:
1) Do a database dump as SQL:
docker exec app_db sh -c 'exec mysqldump app_schema -uroot -proot123' > database_dump.sql
2) Update the image:
docker pull mysql:5.6
3) Update the container:
docker rm -f app_db
docker run --name app_db --restart unless-stopped \
-e MYSQL_ROOT_PASSWORD=root123 \
-d mysql:5.6
4) Restore the database dump:
docker exec app_db sh -c 'exec mysql -uroot -proot123' < database_dump.sql
How to update MySQL container using an external volume
Using an external volume is a better way of managing data, and it makes easier to update MySQL. Loosing the container will not lose any data. You can use docker-compose to facilitate managing multi-container Docker applications in a single host:
1) Create the docker-compose.yml file in order to manage your applications:
version: '2'
services:
app_db:
image: mysql:5.6
restart: unless-stopped
volumes_from: app_db_data
app_db_data:
volumes: /my/data/dir:/var/lib/mysql
2) Update MySQL (from the same folder as the docker-compose.yml file):
docker-compose pull
docker-compose up -d
Note: the last command above will update the MySQL image, recreate and start the container with the new image.

Similar answer to above
docker images | awk '{print $1}' | grep -v 'none' | grep -iv 'repo' | xargs -n1 docker pull

Here's what it looks like using docker-compose when building a custom Dockerfile.
Build your custom Dockerfile first, appending a next version number to differentiate. Ex: docker build -t imagename:version . This will store your new version locally.
Run docker-compose down
Edit your docker-compose.yml file to reflect the new image name you set at step 1.
Run docker-compose up -d. It will look locally for the image and use your upgraded one.
-EDIT-
My steps above are more verbose than they need to be. I've optimized my workflow by including the build: . parameter to my docker-compose file. The steps looks this now:
Verify that my Dockerfile is what I want it to look like.
Set the version number of my image name in my docker-compose file.
If my image isn't built yet: run docker-compose build
Run docker-compose up -d
I didn't realize at the time, but docker-compose is smart enough to simply update my container to the new image with the one command, instead of having to bring it down first.

If you do not want to use Docker Compose, I can recommend portainer. It has a recreate function that lets you recreate a container while pulling the latest image.

You need to either rebuild all the images and restart all the containers, or somehow yum update the software and restart the database. There is no upgrade path but that you design yourself.

Taking from http://blog.stefanxo.com/2014/08/update-all-docker-images-at-once/
You can update all your existing images using the following command pipeline:
docker images | awk '/^REPOSITORY|\<none\>/ {next} {print $1}' | xargs -n 1 docker pull

Make sure you are using volumes for all the persistent data (configuration, logs, or application data) which you store on the containers related to the state of the processes inside that container. Update your Dockerfile and rebuild the image with the changes you wanted, and restart the containers with your volumes mounted at their appropriate place.

Tried a bunch of things from here, but this worked out for me eventually.
IF you have AutoRemove: On on the Containers you can't STOP and EDIT the contianers, or a Service is running that can't be stopped even momentarily,
You must:
PULL latest image --> docker pull [image:latest]
Verify if the correct image is pulled, you can see the UNUSED tag in the Portainer Images section
UPDATE the service using Portainer or CLI and make sure you use LATEST VERSION of the image, Portainer will give you the option to do same.
THis would not only UPDATE the Container with Latest Image, but also keep the Service Running.

This is something I've also been struggling with for my own images. I have a server environment from which I create a Docker image. When I update the server, I'd like all users who are running containers based on my Docker image to be able to upgrade to the latest server.
Ideally, I'd prefer to generate a new version of the Docker image and have all containers based on a previous version of that image automagically update to the new image "in place." But this mechanism doesn't seem to exist.
So the next best design I've been able to come up with so far is to provide a way to have the container update itself--similar to how a desktop application checks for updates and then upgrades itself. In my case, this will probably mean crafting a script that involves Git pulls from a well-known tag.
The image/container doesn't actually change, but the "internals" of that container change. You could imagine doing the same with apt-get, yum, or whatever is appropriate for you environment. Along with this, I'd update the myserver:latest image in the registry so any new containers would be based on the latest image.
I'd be interested in hearing whether there is any prior art that addresses this scenario.

Update
This is mainly to query the container not to update as building images is the way to be done
I had the same issue so I created docker-run, a very simple command-line tool that runs inside a docker container to update packages in other running containers.
It uses docker-py to communicate with running docker containers and update packages or run any arbitrary single command
Examples:
docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run exec
by default this will run date command in all running containers and return results but you can issue any command e.g. docker-run exec "uname -a"
To update packages (currently only using apt-get):
docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run update
You can create and alias and use it as a regular command line
e.g.
alias docker-run='docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run'

Related

How to Recreate a Docker Container Without Docker Compose

TLDR: When using docker compose, I can simply recreate a container by changing its configuration and/or image in the docker-compose.yml file along with running docker-compose up. Is there any generic equivalent for recreating a container (to apply changes) which was created by a bare docker create/run command?
Elaborating a bit:
The associated docker compose documentation states:
If there are existing containers for a service, and the service’s configuration or image was changed after the container’s creation, docker-compose up picks up the changes by stopping and recreating the containers (preserving mounted volumes).
I'm having troubles to understand which underlaying steps are actually performed during this recreation, as e.g. the docker (without compose) documentation doesn't really seem to use the recreate term at all.
Is it safe to simply run docker container rm xy and then docker container create/run (along with passing the full and modified configuration)? Or is docker compose actually doing more under the hood?
I already found answers about applying specific configuration changes like e.g. this one about port mappings, but I'm still wondering whether there is a more general answer to this.
I'm having troubles to understand which underlaying steps are actually performed during this recreation, as e.g. the docker (without compose) documentation doesn't really seem to use the recreate term at all.
docker-compose is a high level tool; it performs in a single operation what would require multiple commands using the docker cli. When docker-compose says, "docker-compose up picks up the changes by stopping and recreating the containers", it means it is doing the equivalent of:
docker stop <somecontainer>
docker rm <somecontainer>
docker run ...
(Where ... represents whatever configuration is implied by the service definition in your docker-compose.yaml).
Let's say it recognizes a change in container1 it does (not really, working via API):
docker compose rm -fs container1
docker compose create (--build) container1
docker compose start container1
What is partially close to (depending on your compose-config):
docker rm -f projectname_container1
(docker build --flags)
docker create --allDozensOfAttributes projectname_container1
docker start projectname_container1
docker network connect (--flags) projectname_networkname projectname_container1
and maybe more..
so i would advise to use the docker compose commands for single services instead of docker cli if suitable..
The issue is that the variables and settings are not exposed through any docker apis. It may be possible by way of connecting directly to the docker socket, parsing the variables, and then stopping/removing the container and recreating it.
This would be prone to all kinds of errors and would require lots of debugging to get these values.
What I do is to simply store my docker commands in a shell script. You can just save the command you need to run into a text file, name it .sh, set the -x on the file, then run it. Then when you stop/delete the container, you can just rerun the shell script.
Another thing you can do would be to replace the docker command with a function (in something like your ~/.bashrc) that stores the arguments to a text file and rechecks that text file with a passed argument (like "recreate" followed by a name). However, I'm more a fan of doing docker containers in their own shell scripts as its more portable.

How to store all container's data in docker?

I am trying to execute ubuntu in docker. I use this command docker run -it ubuntu, and I want to install some packages and store some files. I know about volumes, but I have used it only in docker-compose. Is it possible to store all the container's data or how can I do that properly?
when you run a container, Docker creates a namespace and loads the image filesystem in that namespace. any changes you apply in a running container including installing some packages only remains during the lifetime of the container if you remove the container and rerun it they're gone.
if you want to your changes be permanent you have to commit the running container and actually create an image for that using this command:
As David pointed out in the comments
You should pretty much never run docker commit. It leads to images that can't be reproduced, and you'll be in trouble if there's a security fix you're required to take a year down the road.
sudo docker commit [CONTAINER_ID] [new_image_name]
if you have an app inside the container like MySQL and wants the data stored in that app be permanent you should map a volume from the host like this:
docker run -d -v /home/username/mysql-data:/var/lib/mysql --name mysql mysql

How to restart the ROS docker container with GUI enabled [duplicate]

Let's say I have pulled the official mysql:5.6.21 image.
I have deployed this image by creating several docker containers.
These containers have been running for some time until MySQL 5.6.22 is released. The official image of mysql:5.6 gets updated with the new release, but my containers still run 5.6.21.
How do I propagate the changes in the image (i.e. upgrade MySQL distro) to all my existing containers? What is the proper Docker way of doing this?
After evaluating the answers and studying the topic I'd like to summarize.
The Docker way to upgrade containers seems to be the following:
Application containers should not store application data. This way you can replace app container with its newer version at any time by executing something like this:
docker pull mysql
docker stop my-mysql-container
docker rm my-mysql-container
docker run --name=my-mysql-container --restart=always \
-e MYSQL_ROOT_PASSWORD=mypwd -v /my/data/dir:/var/lib/mysql -d mysql
You can store data either on host (in directory mounted as volume) or in special data-only container(s). Read more about it
About volumes (Docker docs)
Tiny Docker Pieces, Loosely Joined (by Tom Offermann)
How to deal with persistent storage (e.g. databases) in Docker (Stack Overflow question)
Upgrading applications (eg. with yum/apt-get upgrade) within containers is considered to be an anti-pattern. Application containers are supposed to be immutable, which shall guarantee reproducible behavior. Some official application images (mysql:5.6 in particular) are not even designed to self-update (apt-get upgrade won't work).
I'd like to thank everybody who gave their answers, so we could see all different approaches.
I don't like mounting volumes as a link to a host directory, so I came up with a pattern for upgrading docker containers with entirely docker managed containers. Creating a new docker container with --volumes-from <container> will give the new container with the updated images shared ownership of docker managed volumes.
docker pull mysql
docker create --volumes-from my_mysql_container [...] --name my_mysql_container_tmp mysql
By not immediately removing the original my_mysql_container yet, you have the ability to revert back to the known working container if the upgraded container doesn't have the right data, or fails a sanity test.
At this point, I'll usually run whatever backup scripts I have for the container to give myself a safety net in case something goes wrong
docker stop my_mysql_container
docker start my_mysql_container_tmp
Now you have the opportunity to make sure the data you expect to be in the new container is there and run a sanity check.
docker rm my_mysql_container
docker rename my_mysql_container_tmp my_mysql_container
The docker volumes will stick around so long as any container is using them, so you can delete the original container safely. Once the original container is removed, the new container can assume the namesake of the original to make everything as pretty as it was to begin.
There are two major advantages to using this pattern for upgrading docker containers. Firstly, it eliminates the need to mount volumes to host directories by allowing volumes to be directly transferred to an upgraded containers. Secondly, you are never in a position where there isn't a working docker container; so if the upgrade fails, you can easily revert to how it was working before by spinning up the original docker container again.
Just for providing a more general (not mysql specific) answer...
In short
Synchronize with service image registry (https://docs.docker.com/compose/compose-file/#image):
docker-compose pull
Recreate container if docker-compose file or image have changed:
docker-compose up -d
Background
Container image management is one of the reason for using docker-compose
(see https://docs.docker.com/compose/reference/up/)
If there are existing containers for a service, and the service’s configuration or image was changed after the container’s creation, docker-compose up picks up the changes by stopping and recreating the containers (preserving mounted volumes). To prevent Compose from picking up changes, use the --no-recreate flag.
Data management aspect being also covered by docker-compose through mounted external "volumes" (See https://docs.docker.com/compose/compose-file/#volumes) or data container.
This leaves potential backward compatibility and data migration issues untouched, but these are "applicative" issues, not Docker specific, which have to be checked against release notes and tests...
I would like to add that if you want to do this process automatically (download, stop and restart a new container with the same settings as described by #Yaroslav) you can use WatchTower. A program that auto updates your containers when they are changed https://github.com/v2tec/watchtower
Consider for this answers:
The database name is app_schema
The container name is app_db
The root password is root123
How to update MySQL when storing application data inside the container
This is considered a bad practice, because if you lose the container, you will lose the data. Although it is a bad practice, here is a possible way to do it:
1) Do a database dump as SQL:
docker exec app_db sh -c 'exec mysqldump app_schema -uroot -proot123' > database_dump.sql
2) Update the image:
docker pull mysql:5.6
3) Update the container:
docker rm -f app_db
docker run --name app_db --restart unless-stopped \
-e MYSQL_ROOT_PASSWORD=root123 \
-d mysql:5.6
4) Restore the database dump:
docker exec app_db sh -c 'exec mysql -uroot -proot123' < database_dump.sql
How to update MySQL container using an external volume
Using an external volume is a better way of managing data, and it makes easier to update MySQL. Loosing the container will not lose any data. You can use docker-compose to facilitate managing multi-container Docker applications in a single host:
1) Create the docker-compose.yml file in order to manage your applications:
version: '2'
services:
app_db:
image: mysql:5.6
restart: unless-stopped
volumes_from: app_db_data
app_db_data:
volumes: /my/data/dir:/var/lib/mysql
2) Update MySQL (from the same folder as the docker-compose.yml file):
docker-compose pull
docker-compose up -d
Note: the last command above will update the MySQL image, recreate and start the container with the new image.
Similar answer to above
docker images | awk '{print $1}' | grep -v 'none' | grep -iv 'repo' | xargs -n1 docker pull
Here's what it looks like using docker-compose when building a custom Dockerfile.
Build your custom Dockerfile first, appending a next version number to differentiate. Ex: docker build -t imagename:version . This will store your new version locally.
Run docker-compose down
Edit your docker-compose.yml file to reflect the new image name you set at step 1.
Run docker-compose up -d. It will look locally for the image and use your upgraded one.
-EDIT-
My steps above are more verbose than they need to be. I've optimized my workflow by including the build: . parameter to my docker-compose file. The steps looks this now:
Verify that my Dockerfile is what I want it to look like.
Set the version number of my image name in my docker-compose file.
If my image isn't built yet: run docker-compose build
Run docker-compose up -d
I didn't realize at the time, but docker-compose is smart enough to simply update my container to the new image with the one command, instead of having to bring it down first.
If you do not want to use Docker Compose, I can recommend portainer. It has a recreate function that lets you recreate a container while pulling the latest image.
You need to either rebuild all the images and restart all the containers, or somehow yum update the software and restart the database. There is no upgrade path but that you design yourself.
Taking from http://blog.stefanxo.com/2014/08/update-all-docker-images-at-once/
You can update all your existing images using the following command pipeline:
docker images | awk '/^REPOSITORY|\<none\>/ {next} {print $1}' | xargs -n 1 docker pull
Make sure you are using volumes for all the persistent data (configuration, logs, or application data) which you store on the containers related to the state of the processes inside that container. Update your Dockerfile and rebuild the image with the changes you wanted, and restart the containers with your volumes mounted at their appropriate place.
Tried a bunch of things from here, but this worked out for me eventually.
IF you have AutoRemove: On on the Containers you can't STOP and EDIT the contianers, or a Service is running that can't be stopped even momentarily,
You must:
PULL latest image --> docker pull [image:latest]
Verify if the correct image is pulled, you can see the UNUSED tag in the Portainer Images section
UPDATE the service using Portainer or CLI and make sure you use LATEST VERSION of the image, Portainer will give you the option to do same.
THis would not only UPDATE the Container with Latest Image, but also keep the Service Running.
This is something I've also been struggling with for my own images. I have a server environment from which I create a Docker image. When I update the server, I'd like all users who are running containers based on my Docker image to be able to upgrade to the latest server.
Ideally, I'd prefer to generate a new version of the Docker image and have all containers based on a previous version of that image automagically update to the new image "in place." But this mechanism doesn't seem to exist.
So the next best design I've been able to come up with so far is to provide a way to have the container update itself--similar to how a desktop application checks for updates and then upgrades itself. In my case, this will probably mean crafting a script that involves Git pulls from a well-known tag.
The image/container doesn't actually change, but the "internals" of that container change. You could imagine doing the same with apt-get, yum, or whatever is appropriate for you environment. Along with this, I'd update the myserver:latest image in the registry so any new containers would be based on the latest image.
I'd be interested in hearing whether there is any prior art that addresses this scenario.
Update
This is mainly to query the container not to update as building images is the way to be done
I had the same issue so I created docker-run, a very simple command-line tool that runs inside a docker container to update packages in other running containers.
It uses docker-py to communicate with running docker containers and update packages or run any arbitrary single command
Examples:
docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run exec
by default this will run date command in all running containers and return results but you can issue any command e.g. docker-run exec "uname -a"
To update packages (currently only using apt-get):
docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run update
You can create and alias and use it as a regular command line
e.g.
alias docker-run='docker run --rm -v /var/run/docker.sock:/tmp/docker.sock itech/docker-run'

Docker: How a container persists data without volumes in the container?

I'm running the official solr 6.6 container used in a docker-compose environment without any relevant volumes.
If i modify a running solr container the data survives a restart.
I dont see any volumes mounted and it works for a plain solr container:
docker run --name solr_test -d -p 8983:8983 -t library/solr:6.6
docker exec -it solr_test /bin/bash -c 'echo woot > /opt/solr/server/solr/testfile'
docker stop solr_test
docker start solr_test
docker exec -it solr_test cat /opt/solr/server/solr/testfile
Above example prints 'woot'. I thought that a container doesnt persist any data? Also the documentation mentions that the solr cores are persisted in the container.
All i found, regarding container persistence is that i need to add volumes on my own like mentioned here.
So i'm confused: do containers store the data changed within the container or not? And how does the solr container achive this behaviour? The only option i see is that i misunderstood peristence in case of docker or the build of the container can set some kind of option to achieve this which i dont know about and didnt see in the solr Dockerfile.
This is expected behaviour.
The data you create inside a container persist as long as you don't delete the container.
But think containers in some way of throw away mentality. Normally you would want to be able to remove the container with docker rm and spawn a new instance including your modified config files. That's why you would need an e.g. named volume here, which survives a container life cycle on your host.
The Dockerfile, because you mention it in your question, actually only defines the image. When you call docker run you create a container from it. Exactly as defined in the image. A fresh instance without any modifications.
When you call docker commit on your container you snapshot it (including the changes you made to the files) and create a new image out of it. They achieve the data persistence this way.
The documentation you referring to explains this in detail.

Why the docker keeps both image and image container on VM?

The problem I encounter when working with large images is that Docker copies all the data when you create a container from it: so having 25gb image and a container for it totally takes about 50gb on Docker VM. Am I doing something wrong or does Docker always function like that? If so, why? E. g. in Git you may use the code directly after you clone the repo, most of the time you don't need to make one more additional copy of branch or whatever.
P. S. My use case is the following: I want to keep different versions of my MySQL database (because currently it is changed exclusively by developers and it happens not so often) and because I want to enable fast restoration (the only way MySQL allows restoration is from *.sql file and it takes 7 hours - too long to be able to play with db freely)
MySql databases use volumes at least the official image. You only need two containers withe same image using different named volumes:
docker create volume devdb
docker run --name devdb -v devdb:/var/lib/mysql -p 3306:3306-e MYSQL_ROOT_PASSWORD=my-secret-pw -d mysql
Then another for you:
docker create volume mydb
docker run --name mydb -v mydb:/var/lib/mysql -p 3307:3306 -e MYSQL_ROOT_PASSWORD=my-secret-pw -d mysql
And I am afraid that docker copies all the image content into the new container. But I am not sure about that.
Regards

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