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I already tried to search about openCV ROI function, but All of them used rectangle roi function.
I want to get roi using by inclined line that get from hough transform function.
My situation is next :
I have multiple vertical lines(little inclined) that output from hough transform function.
i want to get image(Matrix) between vertical lines.
enter image description here
i want to get divided matrix in my image (For example, A image, B image, C image etc.. )
Is there ROI function that used line in openCV?
or
any another method?
I think you need to use contours to define your roi. If it is not a perfect square you can not use the ROI function, because this is always a perfect square (not even a rotated square)
int main()
{
enum hierIdx { H_NEXT = 0, H_PREVIOUS, H_FIRST_CHILD, H_PARENT };
cv::Mat img = cv::imread("example_image.jpg", cv::IMREAD_UNCHANGED);
// convert RGB to gray scale image
cv::Mat imgGrs;
cv::cvtColor(img, imgGrs, cv::COLOR_RGB2GRAY);
// because it was a .jpg the grey values are messed up
// we fix it by thresholding at 128
cv::threshold(imgGrs, imgGrs, 128, 255, cv::THRESH_BINARY);
imgGrs = ~imgGrs;
// now create contours (we need the hierarchy to find the inner shapes)
std::vector<std::vector<cv::Point> > contours;
std::vector<cv::Vec4i> hierarchy;
cv::findContours(imgGrs.clone(), contours, hierarchy, CV_RETR_TREE, CV_CHAIN_APPROX_SIMPLE);
//cv::drawContours(img, contours, -1, cv::Scalar(255, 0, 0), 1);
int iLen = (int)hierarchy.size();
int idxChild = -1;
// find first child of master
for (int i = 0; i < iLen; i++){
if (hierarchy[i][H_PARENT] < 0) {
idxChild = hierarchy[i][H_FIRST_CHILD];
break;
}
}
// used for erosion of mask
cv::Mat element = cv::getStructuringElement(cv::MORPH_ELLIPSE, cv::Size(3, 3));
while (idxChild >= 0)
{
// create image to use as mask for section
cv::Mat mask = cv::Mat::zeros(imgGrs.size(), CV_8U);
cv::drawContours(mask, contours, idxChild, cv::Scalar(255), CV_FILLED);
// make masker 1 pixel smaller so we wont see the outer contours
cv::erode(mask, mask, element);
// ok nu we create a singled out part we want
cv::Mat part = imgGrs & mask;
// Crop it to the AOI rectangle
cv::Rect aoi = cv::boundingRect(contours[idxChild]);
part = part(aoi);
// part is now the aoi image you asked for
// proceed to next AOI
idxChild = hierarchy[idxChild][H_NEXT];
}
return 0;
}
I am developing an app for iOS with openCV that take a picture from a monitor and extract a curve, but when the image has some bright zones after thresholding, I don't get the complete curve but some black zones
Original image
processed image after thresholding
original = [MAOpenCV cvMatGrayFromUIImage:_sourceImage];
cv::threshold(original, original, 70, 255, CV_THRESH_BINARY | CV_THRESH_OTSU);
findContours(original, contours, hierarchy,CV_RETR_CCOMP, CV_CHAIN_APPROX_SIMPLE );
cv::Mat skel(original.size(), CV_8UC1, cv::Scalar(0));
int idx = 0;
for(; idx >= 0; idx = hierarchy[idx][0])
{
if (contours[idx].size()>250 && idx>-1){
cv::Scalar color( 255,255,255);
drawContours(skel, contours, idx, color, CV_FILLED, 8, hierarchy);
}
}
cv::threshold(skel, skel, 100, 255, CV_THRESH_BINARY_INV);
cv::erode(skel,skel,cv::Mat(),cv::Point(-1,-1),2);
So how I can process the image to extract the curve when the image have some bright zones like the example
When you have a background with an uneven illumination, you may want to apply first a White Top-Hat (or here for MatLab, and here for OpenCV).
Here is the result I got using a structuring element of type disk with radius 3.
Then, whatever thresholding method you choose will work.
Wouldn't be sufficient to use Otsu's thresholding?
Code fragment:
import cv2
image = cv2.imread('d:/so.jpg', cv2.IMREAD_GRAYSCALE)
threshold, thresholded = cv2.threshold(image, 0, 255, type=cv2.THRESH_BINARY + cv2.THRESH_OTSU)
print(threshold)
cv2.imshow('so', image);
cv2.imshow('thresholded', thresholded)
cv2.waitKey(0)
We're currently trying to detect the object regions in medical instruments images using the methods available in OpenCV, C++ version. An example image is shown below:
Here are the steps we're following:
Converting the image to gray scale
Applying median filter
Find edges using sobel filter
Convert the result to binary image using a threshold of 25
Skeletonize the image to make sure we have neat edges
Finding X largest connected components
This approach works perfectly for the image 1 and here is the result:
The yellow borders are the connected components detected.
The rectangles are just to highlight the presence of a connected component.
To get understandable results, we just removed the connected components that are completely inside any another one, so the end result is something like this:
So far, everything was fine but another sample of image complicated our work shown below.
Having a small light green towel under the objects results this image:
After filtering the regions as we did earlier, we got this:
Obviously, it is not what we need..we're excepting something like this:
I'm thinking about clustering the closest connected components found(somehow!!) so we can minimize the impact of the presence of the towel, but don't know yet if it's something doable or someone has tried something like this before? Also, does anyone have any better idea to overcome this kind of problems?
Thanks in advance.
Here's what I tried.
In the images, the background is mostly greenish and the area of the background is considerably larger than that of the foreground. So, if you take a color histogram of the image, the greenish bins will have higher values. Threshold this histogram so that bins having smaller values are set to zero. This way we'll most probably retain the greenish (higher value) bins and discard other colors. Then backproject this histogram. The backprojection will highlight these greenish regions in the image.
Backprojection:
Then threshold this backprojection. This gives us the background.
Background (after some morphological filtering):
Invert the background to get foreground.
Foreground (after some morphological filtering):
Then find the contours of the foreground.
I think this gives a reasonable segmentation, and using this as mask you may be able to use a segmentation like GrabCut to refine the boundaries (I haven't tried this yet).
EDIT:
I tried the GrabCut approach and it indeed refines the boundaries. I've added the code for GrabCut segmentation.
Contours:
GrabCut segmentation using the foreground as mask:
I'm using the OpenCV C API for the histogram processing part.
// load the color image
IplImage* im = cvLoadImage("bFly6.jpg");
// get the color histogram
IplImage* im32f = cvCreateImage(cvGetSize(im), IPL_DEPTH_32F, 3);
cvConvertScale(im, im32f);
int channels[] = {0, 1, 2};
int histSize[] = {32, 32, 32};
float rgbRange[] = {0, 256};
float* ranges[] = {rgbRange, rgbRange, rgbRange};
CvHistogram* hist = cvCreateHist(3, histSize, CV_HIST_ARRAY, ranges);
IplImage* b = cvCreateImage(cvGetSize(im32f), IPL_DEPTH_32F, 1);
IplImage* g = cvCreateImage(cvGetSize(im32f), IPL_DEPTH_32F, 1);
IplImage* r = cvCreateImage(cvGetSize(im32f), IPL_DEPTH_32F, 1);
IplImage* backproject32f = cvCreateImage(cvGetSize(im), IPL_DEPTH_32F, 1);
IplImage* backproject8u = cvCreateImage(cvGetSize(im), IPL_DEPTH_8U, 1);
IplImage* bw = cvCreateImage(cvGetSize(im), IPL_DEPTH_8U, 1);
IplConvKernel* kernel = cvCreateStructuringElementEx(3, 3, 1, 1, MORPH_ELLIPSE);
cvSplit(im32f, b, g, r, NULL);
IplImage* planes[] = {b, g, r};
cvCalcHist(planes, hist);
// find min and max values of histogram bins
float minval, maxval;
cvGetMinMaxHistValue(hist, &minval, &maxval);
// threshold the histogram. this sets the bin values that are below the threshold to zero
cvThreshHist(hist, maxval/32);
// backproject the thresholded histogram. backprojection should contain higher values for the
// background and lower values for the foreground
cvCalcBackProject(planes, backproject32f, hist);
// convert to 8u type
double min, max;
cvMinMaxLoc(backproject32f, &min, &max);
cvConvertScale(backproject32f, backproject8u, 255.0 / max);
// threshold backprojected image. this gives us the background
cvThreshold(backproject8u, bw, 10, 255, CV_THRESH_BINARY);
// some morphology on background
cvDilate(bw, bw, kernel, 1);
cvMorphologyEx(bw, bw, NULL, kernel, MORPH_CLOSE, 2);
// get the foreground
cvSubRS(bw, cvScalar(255, 255, 255), bw);
cvMorphologyEx(bw, bw, NULL, kernel, MORPH_OPEN, 2);
cvErode(bw, bw, kernel, 1);
// find contours of the foreground
//CvMemStorage* storage = cvCreateMemStorage(0);
//CvSeq* contours = 0;
//cvFindContours(bw, storage, &contours);
//cvDrawContours(im, contours, CV_RGB(255, 0, 0), CV_RGB(0, 0, 255), 1, 2);
// grabcut
Mat color(im);
Mat fg(bw);
Mat mask(bw->height, bw->width, CV_8U);
mask.setTo(GC_PR_BGD);
mask.setTo(GC_PR_FGD, fg);
Mat bgdModel, fgdModel;
grabCut(color, mask, Rect(), bgdModel, fgdModel, GC_INIT_WITH_MASK);
Mat gcfg = mask == GC_PR_FGD;
vector<vector<cv::Point>> contours;
vector<Vec4i> hierarchy;
findContours(gcfg, contours, hierarchy, CV_RETR_LIST, CV_CHAIN_APPROX_SIMPLE, cv::Point(0, 0));
for(int idx = 0; idx < contours.size(); idx++)
{
drawContours(color, contours, idx, Scalar(0, 0, 255), 2);
}
// cleanup ...
UPDATE: We can do the above using the C++ interface as shown below.
const int channels[] = {0, 1, 2};
const int histSize[] = {32, 32, 32};
const float rgbRange[] = {0, 256};
const float* ranges[] = {rgbRange, rgbRange, rgbRange};
Mat hist;
Mat im32fc3, backpr32f, backpr8u, backprBw, kernel;
Mat im = imread("bFly6.jpg");
im.convertTo(im32fc3, CV_32FC3);
calcHist(&im32fc3, 1, channels, Mat(), hist, 3, histSize, ranges, true, false);
calcBackProject(&im32fc3, 1, channels, hist, backpr32f, ranges);
double minval, maxval;
minMaxIdx(backpr32f, &minval, &maxval);
threshold(backpr32f, backpr32f, maxval/32, 255, THRESH_TOZERO);
backpr32f.convertTo(backpr8u, CV_8U, 255.0/maxval);
threshold(backpr8u, backprBw, 10, 255, THRESH_BINARY);
kernel = getStructuringElement(MORPH_ELLIPSE, Size(3, 3));
dilate(backprBw, backprBw, kernel);
morphologyEx(backprBw, backprBw, MORPH_CLOSE, kernel, Point(-1, -1), 2);
backprBw = 255 - backprBw;
morphologyEx(backprBw, backprBw, MORPH_OPEN, kernel, Point(-1, -1), 2);
erode(backprBw, backprBw, kernel);
Mat mask(backpr8u.rows, backpr8u.cols, CV_8U);
mask.setTo(GC_PR_BGD);
mask.setTo(GC_PR_FGD, backprBw);
Mat bgdModel, fgdModel;
grabCut(im, mask, Rect(), bgdModel, fgdModel, GC_INIT_WITH_MASK);
Mat fg = mask == GC_PR_FGD;
I would consider a few options. My assumption is that the camera does not move. I haven't used the images or written any code, so this is mostly from experience.
Rather than just looking for edges, try separating the background using a segmentation algorithm. Mixture of Gaussian can help with this. Given a set of images over the same region (i.e. video), you can cancel out regions which are persistent. Then, new items such as instruments will pop out. Connected components can then be used on the blobs.
I would look at segmentation algorithms to see if you can optimize the conditions to make this work for you. One major item is to make sure your camera is stable or you stabilize the images yourself pre-processing.
I would consider using interest points to identify regions in the image with a lot of new material. Given that the background is relatively plain, small objects such as needles will create a bunch of interest points. The towel should be much more sparse. Perhaps overlaying the detected interest points over the connected component footprint will give you a "density" metric which you can then threshold. If the connected component has a large ratio of interest points for the area of the item, then it is an interesting object.
On this note, you can even clean up the connected component footprint by using a Convex Hull to prune the objects you have detected. This may help situations such as a medical instrument casting a shadow on the towel which stretches the component region. This is a guess, but interest points can definitely give you more information than just edges.
Finally, given that you have a stable background with clear objects in view, I would take a look at Bag-of-Features to see if you can just detect each individual object in the image. This may be useful since there seems to be a consistent pattern to the objects in these images. You can build a big database of images such as needles, gauze, scissors, etc. Then BoF, which is in OpenCV will find those candidates for you. You can also mix it in with other operations you are doing to compare results.
Bag of Features using OpenCV
http://www.codeproject.com/Articles/619039/Bag-of-Features-Descriptor-on-SIFT-Features-with-O
-
I would also suggest an idea to your initial version. You can also skip the contours, whose regions have width and height greater than the half the image width and height.
//take the rect of the contours
Rect rect = Imgproc.boundingRect(contours.get(i));
if (rect.width < inputImageWidth / 2 && rect.height < inputImageHeight / 2)
//then continue to draw or use for next purposes.
I know that there are a hundred topics about my question in all over the web, but i would like to ask specific for my problem because I tried almost all solutions without any success.
I am trying to count circles in an image (yes i have already tried hough circles but due to light reflections, i think, on my object is not very robust).
Then I tried to create a classifier (no success i think there is no enough features so the detection is not good)
I have also tried HSV conversation and tried to find my object with color (again I had some problems because of the light and the variations of colors)
As you can see on image, there are 8 caps and i would like to be able to count them.
Using all of this methods, i was able to detect the objects on an image (because I was optimizing all the parameters of functions for the specific image) but as soon as I load a new, similar, image the results was disappointing.
Please follow this link to see the Image
Bellow you can find parts of everything i have tried:
1. Hough circles
img = cv2.imread('frame71.jpg',1)
img = cv2.medianBlur(img,5)
cimg = cv2.cvtColor(img,cv2.COLOR_GRAY2BGR)
if img == None:
print "There is no image file. Quiting..."
quit()
circles = cv2.HoughCircles(img,cv.CV_HOUGH_GRADIENT,3,50,
param1=55,param2=125,minRadius=25,maxRadius=45)
circles = np.uint16(np.around(circles))
for i in circles[0,:]:
# draw the outer circle
cv2.circle(cimg,(i[0],i[1]),i[2],(0,255,0),2)
# draw the center of the circle
cv2.circle(cimg,(i[0],i[1]),2,(0,0,255),3)
print len(circles[0,:])
cv2.imshow('detected circles',cimg)
cv2.waitKey(0)
cv2.destroyAllWindows()
2. HSV Transform, color detection
def image_process(frame, h_low, s_low, v_low, h_up, s_up, v_up, ksize):
temp = ksize
if(temp%2==1):
ksize = temp
else:
ksize = temp+1
#if(True):
# return frame
#thresh = frame
#try:
#TODO: optimize as much as possiblle this part of code
try:
hsv = cv2.cvtColor(frame, cv2.COLOR_BGR2HSV)
lower = np.array([h_low, s_low, v_low],np.uint8)
upper = np.array([h_up,s_up,h_up],np.uint8)
mask = cv2.inRange(hsv, lower, upper)
res = cv2.bitwise_and(hsv,hsv, mask= mask)
thresh = cv2.cvtColor(res, cv2.COLOR_BGR2GRAY)
#thresh = cv2.threshold(res, 50, 255, cv2.THRESH_BINARY)[1]
thresh = cv2.threshold(thresh, 50, 255, cv2.THRESH_BINARY)[1]
thresh = cv2.medianBlur(thresh,ksize)
except Exception as inst:
print type(inst)
#cv2.imshow('thresh', thresh)
return thresh
3. Cascade classifier
img = cv2.imread('frame405.jpg', 1)
cap_cascade = cv2.CascadeClassifier('haar_30_17_16_stage.xml')
caps = cap_cascade.detectMultiScale(img, 1.3, 5)
#print caps
for (x,y,w,h) in caps:
cv2.rectangle(img, (x,y), (x+w,y+h), (255,0,0),2)
#cv2.rectangle(img, (10,10),(100,100),(0,255,255),4)
cv2.imshow('image', img)
cv2.waitKey(0)
cv2.destroyAllWindows()
quit()
About training the classifier I really used a lot of variations of images, samples, negatives and positives, number of stages, w and h but the results was not very accurate.
Finally I would like to know from your experience which is the best method I should follow and I will stick on that in order to optimize my detection. Keep in mind that all images are similiar but NOT identical. There are some differences due to light, movement etc
Than you in advance,
I did some experiment with the sample image. I'm posting my results, and if you find it useful, you can improve it further and optimize. Here are the steps:
downsample the image
perform morphological opening
find Hough circles
cluster the circles by radii (bottle circles should get the same label)
filter the circles by a radius threshold
you can also cluster circles by their center x and y coordinates (I haven't done this)
prepare a mask from the filtered circles and extract the possible bottles region
cluster this region by color
Code is in C++. I'm attaching my results.
Mat im = imread(INPUT_FOLDER_PATH + string("frame71.jpg"));
Mat small;
int kernelSize = 9; // try with different kernel sizes. 5 onwards gives good results
pyrDown(im, small); // downsample the image
Mat morph;
Mat kernel = getStructuringElement(MORPH_ELLIPSE, Size(kernelSize, kernelSize));
morphologyEx(small, morph, MORPH_OPEN, kernel); // open
Mat gray;
cvtColor(morph, gray, CV_BGR2GRAY);
vector<Vec3f> circles;
HoughCircles(gray, circles, CV_HOUGH_GRADIENT, 2, gray.rows/8.0); // find circles
// -------------------------------------------------------
// cluster the circles by radii. similarly you can cluster them by center x and y for further filtering
Mat circ = Mat(circles);
Mat data[3];
split(circ, data);
Mat labels, centers;
kmeans(data[2], 2, labels, TermCriteria(CV_TERMCRIT_EPS+CV_TERMCRIT_ITER, 10, 1.0), 2, KMEANS_PP_CENTERS, centers);
// -------------------------------------------------------
Mat rgb;
small.copyTo(rgb);
//cvtColor(gray, rgb, CV_GRAY2BGR);
Mat mask = Mat::zeros(Size(gray.cols, gray.rows), CV_8U);
for(size_t i = 0; i < circles.size(); i++)
{
Point center(cvRound(circles[i][0]), cvRound(circles[i][1]));
int radius = cvRound(circles[i][2]);
float r = centers.at<float>(labels.at<int>(i));
if (r > 30.0f && r < 45.0f) // filter circles by radius (values are based on the sample image)
{
// just for display
circle(rgb, center, 3, Scalar(0,255,0), -1, 8, 0);
circle(rgb, center, radius, Scalar(0,0,255), 3, 8, 0);
// prepare a mask
circle(mask, center, radius, Scalar(255,255,255), -1, 8, 0);
}
}
// use each filtered circle as a mask and extract the region from original downsampled image
Mat rgb2;
small.copyTo(rgb2, mask);
// cluster the masked region by color
Mat rgb32fc3, lbl;
rgb2.convertTo(rgb32fc3, CV_32FC3);
int imsize[] = {rgb32fc3.rows, rgb32fc3.cols};
Mat color = rgb32fc3.reshape(1, rgb32fc3.rows*rgb32fc3.cols);
kmeans(color, 4, lbl, TermCriteria(CV_TERMCRIT_EPS+CV_TERMCRIT_ITER, 10, 1.0), 2, KMEANS_PP_CENTERS);
Mat lbl2d = lbl.reshape(1, 2, imsize);
Mat lbldisp;
lbl2d.convertTo(lbldisp, CV_8U, 50);
Mat lblColor;
applyColorMap(lbldisp, lblColor, COLORMAP_JET);
Results:
Filtered circles:
Masked:
Segmented:
Hello finally i think I found a way to count caps on bottles.
Read image
Teach (find correct values for HSV up/low limits)
Select desire color (using HSV and mask)
Find contours on the masked image
Find the minCircles for contours
Reject all circles beyond thresholds
I have also order a polarized filter which I think it will reduce glares a lot. I am open to suggestions for further improvement (robustness and speed). Both robustness and speed is crucial for my application.
Thank you.
I am trying to set up my programme to threshold for a colour (in BGR format). I have not fully decided which colour I will be looking for yet. I would also like the program to record how many pixels it has detected of that colour. My code so far is below but it is not working.
#include "cv.h"
#include "highgui.h"
int main()
{
// Initialize capturing live feed from the camera
CvCapture* capture = 0;
capture = cvCaptureFromCAM(0);
// Couldn't get a device? Throw an error and quit
if(!capture)
{
printf("Could not initialize capturing...\n");
return -1;
}
// The two windows we'll be using
cvNamedWindow("video");
cvNamedWindow("thresh");
// An infinite loop
while(true)
{
// Will hold a frame captured from the camera
IplImage* frame = 0;
frame = cvQueryFrame(capture);
// If we couldn't grab a frame... quit
if(!frame)
break;
//create image where threshloded image will be stored
IplImage* imgThreshed = cvCreateImage(cvGetSize(frame), 8, 1);
//i want to keep it BGR format. Im not sure what colour i will be looking for yet. this can be easily changed
cvInRangeS(frame, cvScalar(20, 100, 100), cvScalar(30, 255, 255), imgThreshed);
//show the original feed and thresholded feed
cvShowImage("thresh", imgThreshed);
cvShowImage("video", frame);
// Wait for a keypress
int c = cvWaitKey(10);
if(c!=-1)
{
// If pressed, break out of the loop
break;
}
cvReleaseImage(&imgThreshed);
}
cvReleaseCapture(&capture);
return 0;
}
To threshold for a color,
1) convert the image to HSV
2) Then apply cvInrangeS
3) Once you got threshold image, you can count number of white pixels in it.
Try this tutorial to track yellow color: Tracking colored objects in OpenCV
I can tell how to do it in both Python and C++ and both with and without converting to HSV.
C++ Version (Converting to HSV)
Convert the image into an HSV image:
// Convert the image into an HSV image
IplImage* imgHSV = cvCreateImage(cvGetSize(img), 8, 3);
cvCvtColor(img, imgHSV, CV_BGR2HSV);
Create a new image that will hold the threholded image:
IplImage* imgThreshed = cvCreateImage(cvGetSize(img), 8, 1);
Do the actual thresholding using cvInRangeS
cvInRangeS(imgHSV, cvScalar(20, 100, 100), cvScalar(30, 255, 255), imgThreshed);
Here, imgHSV is the reference image. And the two cvScalars represent the lower and upper bound of values that are yellowish in colour. (These bounds should work in almost all conditions. If they don't, try experimenting with the last two values).
Consider any pixel. If all three values of that pixel (H, S and V, in that order) lie within the stated ranges, imgThreshed gets a value of 255 at that corresponding pixel. This is repeated for all pixels. So what you finally get is a thresholded image.
Use countNonZero to count the number of white pixels in the thresholded image.
Python Version (Without converting to HSV):
Create the lower and upper boundaries of the range you are interested in, in Numpy array format (Note: You need to use import numpy as np)
lower = np.array((a,b,c), dtype = "uint8")
upper = np.array((x,y,z), dtype = "uint8")
In the above (a,b,c) is the lower bound and (x,y,z) is the upper bound.
2.Get the mask for the pixels that satisfy the range:
mask = cv2.inRange(image, lower, upper)
In the above, image is the image on which you want to work.
Count the number of white pixels that are present in the mask using countNonZero:
yellowpixels = cv2.countNonZero(mask)
print "Number of Yellow pixels are %d" % (yellowpixels)
Sources:
http://srikanthvidyasagar.blogspot.com/2016/01/tracking-colored-objects-in-opencv.html
http://www.pyimagesearch.com/2014/08/04/opencv-python-color-detection/
count number of black pixels in an image in Python with OpenCV