seaching a repeated pattern in neo4j - neo4j

One bill of material relationship is composed of two relationships.
I then find my component definition by searchin this relationship :
(a:Part)-[:consumes]->(b:partBom)-[:referencedBy]->(c:Part)
How can I repeat this pattern in a cypher request in order to find n levels of my bill of material ?

Yoann,
As a follow-on to Michael's answer, if you capture the path in a query of the form
MATCH (a:Part), p=(a)-[:consumes|referencedBy*2..]->(c:Part)
WHERE NOT (c)-[:consumes]->()
WITH a, rels(p) AS rs, nodes(p) AS ns
WITH a, rs, ns, FILTER(n IN ns WHERE 'partBom' IN LABELS(n)) AS boms, FILTER(n in ns WHERE 'Part' in LABELS(n)) AS parts
any following clauses have access to all of the nodes and relationships in the collections ns and rs, and to the BOMs in the collection boms, and the parts in collection parts. The query fragment above will match all of the longest chains of your pattern. You can read more about this relationship pattern concept in the Neo4j manual at this link. You might want to put an upper bound on the number of hops in the initial match if there is a chance of looping.
Grace and peace,
Jim

If you know the number of levels, then you can just spell them out.
(a:Part)-[:consumes]->(b:partBom)-[:referencedBy]->(c:Part)
(c)-[:consumes]->(d:partBom)-[:referencedBy]->(e:Part)
....
Or you can do it more dynamic.
(a:Part)-[:consumes|referencedBy*8]->(c:Part)
WITH rels(path) as rels, nodes(path) as nodes
WHERE ALL(idx in range(0,length(rels)-1,2) WHERE type(rels[idx]) = 'consumes')
AND ALL(idx in range(1,length(rels)-1,2) WHERE type(rels[idx]) = 'referencedBy')
AND ALL(idx in range(1,length(nodes)-1,2) WHERE labels(nodes[idx])[0] = 'partBom')
Usually for something like this, I'd look into the Java API for efficient incremental evaluation of something like that.

Related

Remove automorphisms of a cypher query output

When doing a Cypher query to retrieve a specific subgraph with automorphisms, let's say
MATCH (a)-[:X]-(b)-[:X]-(c),
RETURN a, b, c
It seems that the default behaviour is to return every retrieved subgraph and all their automorphisms.
In that exemple, if (u)-[:X]-(v)-[:X]-(w) is a graph matching the pattern, the output will be u,v,w but also w,v,u, which consist in the same graph.
Is there a way to retrieve each subgraph only once ?
EDIT: It would be great if Cypher have a feature to do that in the search, using some kind of symmetry breaking condition as it would reduce the computing time. If that is not the case, how would you post-process to find the desired output ?
In the query you are making, (a)-[r:X]-(b) and (a)-[t:X]-(c) refer to a similar pattern. Since (b) and (c) can be interchanged. What is the need to repeat matching twice? MATCH (a)-[r:X]-(b) RETURN a, r, b returns all the subgraphs you are looking for.
EDIT
You can do something as follows to find the nodes, which are having two relations of type X.
MATCH (a)-[r:X]-(b) WHERE size((a)-[:X]-()) = 2 RETURN a, r, b
For these kind of mirrored patterns, we can add a restriction on the internal graph ids so only one of the two paths is kept:
MATCH (a)-[:X]-(b)-[:X]-(c)
WHERE id(a) < id(c)
RETURN a, b, c
This will also prevent the case where a = c.

Neo4J match and create relationship is very very slow with few millions records

I have about 3.5M nodes with label A and about 400 nodes with label B.
Nodes with label B already have directed relation like (b1:B)-(c:CONNECTS)->(b2:B) now I need to add 3.5M another type of relationships by comparing A node properties with :CONNECTS relationship properties.
My statement looks like this:
MATCH (a:A)
MATCH (c:C)
MATCH (b1:B {id: a.a1_id})-[rl:CONNECTS*1..21]->(b2:B {id: a.b2_id}) WHERE ALL(x in rl WHERE x.connect_id = c.connect_id)
MATCH (new_a:B)-[r:TO]->(new_b:B) WHERE r in rl
CREATE (new_a)-[:TICKET {ticket_id: ID(a)}]->(new_b)
This statement is extremely slow and just hangs up. I even tried to do some performance tuning mentioned here, especially I allocated heap size to 16GB.
I find it quite strange that it can't handle this size of data. What am I missing? I tried to model differently and reduce relationship queries and use more schema index, but I failed to do a lot differently because of type of data I have and type of query I want to perform after all data is there.
I also tried to use periodic commit while creating A nodes with csv import. It has same issues.
I hope I am clear enough. I would really appreciate some inputs. Thanks.
What are the labels A, B, C ? A CONNECTS relationship is also free of meaning.
Queries like this are meant to be comprehensible not the opposite!
// generates 3.5M rows
MATCH (a:A)
// generates x-times 3.5M rows
// you never use that C except for checking an connect id?
MATCH (c:C)
// many million times execute this variable length expand
MATCH (b1:B {id: a.a1_id})-[rl:CONNECTS*1..21]->(b2:B {id: b2_id})
WHERE ALL(x in rl WHERE x.connect_id = c.connect_id)
// lookup by relationship is very bad esp. as you looking over a cross product of all 400x400 B's
MATCH (new_a:B)-[r:TO]->(new_b:B) WHERE r in rl
// why do you store the id of a on this self!!-relationship?
CREATE (new_b)-[:TICKET {ticket_id: ID(a)}]->(new_b);
Where does b2_id come from?
Perhaps something like this:
MATCH (a:A)
MATCH (b1:B {id: a.a1_id})
MATCH (b2:B {id: {b2_id}})
MATCH (b1)-[rels:CONNECTS*..21]->(b2)
WHERE ALL(x in tail(rels) WHERE x.connect_id = head(rels).connect_id)
UNWIND rels AS r
WITH a,startNode(r) as new_a, endNode(r) as new_b
CREATE (new_a)-[:TICKET {ticket_id: ID(a)}]->(new_b);

Optimizing Cypher Query Neo4j

I want to write a query in Cypher and run it on Neo4j.
The query is:
Given some start vertexes, walk edges and find all vertexes that is connected to any of start vertex.
(start)-[*]->(v)
for every edge E walked
if startVertex(E).someproperty != endVertex(E).someproperty, output E.
The graph may contain cycles.
For example, in the graph above, vertexes are grouped by "group" property. The query should return 7 rows representing the 7 orange colored edges in the graph.
If I write the algorithm by myself it would be a simple depth / breadth first search, and for every edge visited if the filter condition is true, output this edge. The complexity is O(V+E)
But I can't express this algorithm in Cypher since it's very different language.
Then i wrote this query:
find all reachable vertexes
(start)-[*]->(v), reachable = start + v.
find all edges starting from any of reachable. if an edge ends with any reachable vertex and passes the filter, output it.
match (reachable)-[]->(n) where n in reachable and reachable.someprop != n.someprop
so the Cypher code looks like this:
MATCH (n:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})
WITH n MATCH (n:Col)-[*]->(m:Col)
WITH collect(distinct n) + collect(distinct m) AS c1
UNWIND c1 AS rn
MATCH (rn:Col)-[]->(xn:Col) WHERE rn.schema<>xn.schema and xn in c1
RETURN rn,xn
The performance of this query is not good as I thought. There are index on :Col(schema)
I am running neo4j 2.3.0 docker image from dockerhub on my windows laptop. Actually it runs on a linux virtual machine on my laptop.
My sample data is a small dataset that contains 0.1M vertexes and 0.5M edges. For some starting nodes it takes 60 or more seconds to complete this query. Any advice for optimizing or rewriting the query? Thanks.
The following code block is the logic I want:
VertexQueue1 = (starting vertexes);
VisitedVertexSet = (empty);
EdgeSet1 = (empty);
While (VertexSet1 is not empty)
{
Vertex0 = VertexQueue1.pop();
VisitedVertexSet.add(Vertex0);
foreach (Edge0 starting from Vertex0)
{
Vertex1 = endingVertex(Edge0);
if (Vertex1.schema <> Vertex0.schema)
{
EdgeSet1.put(Edge0);
}
if (VisitedVertexSet.notContains(Vertex1)
and VertexQueue1.notContains(Vertex1))
{
VertexQueue1.push(Vertex1);
}
}
}
return EdgeSet1;
EDIT:
The profile result shows that expanding all paths has a high cost. Looking at the row number, it seems that Cypher exec engine returns all paths but I want distint edge list only.
LEFT one:
match (start:Col {table:"F_XXY_DSMK_ITRPNL_IDX_STAT_W"})
,(start)-[*0..]->(prev:Col)-->(node:Col)
where prev.schema<>node.schema
return distinct prev,node
RIGHT one:
MATCH (n:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})
WITH n MATCH (n:Col)-[*]->(m:Col)
WITH collect(distinct n) + collect(distinct m) AS c1
UNWIND c1 AS rn
MATCH (rn:Col)-[]->(xn:Col) WHERE rn.schema<>xn.schema and xn in c1
RETURN rn,xn
I think Cypher lets this be much easier than you're expecting it to be, if I'm understanding the query. Try this:
MATCH (start:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})-->(node:Col)
WHERE start.schema <> node.schema
RETURN start, node
Though I'm not sure why you're comparing the schema property on the nodes. Isn't the schema for the start node fixed by the value that you pass in?
I might not be understanding the query though. If you're looking for more than just the nodes connected to the start node, you could do:
MATCH
(start:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})
(start)-[*0..]->(prev:Col)-->(node:Col)
WHERE prev.schema <> node.schema
RETURN prev, node
That open-ended variable length relationship specification might be slow, though.
Also note that when Cypher is browsing a particular path it stops which it finds that it's looped back onto some node (EDIT relationship, not node) in the path matched so far, so cycles aren't really a problem.
Also, is the DWMDATA value that you're passing in interpolated? If so, you should think about using parameters for security / performance:
http://neo4j.com/docs/stable/cypher-parameters.html
EDIT:
Based on your comment I have a couple of thoughts. First limiting to DISTINCT path isn't going to help because every path that it finds is distinct. What you want is the distinct set of pairs, I think, which I think could be achieved by just adding DISTINCT to the query:
MATCH
(start:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})
(start)-[*0..]->(prev:Col)-->(node:Col)
WHERE prev.schema <> node.schema
RETURN DISTINT prev, node
Here is another way to go about it which may or may not be more efficient, but might at least give you an idea for how to go about things differently:
MATCH
path=(start:Col {schema:"${DWMDATA}",table:"CHK_P_T80_ASSET_ACCT_AMT_DD"})-->(node:Col)
WITH rels(path) AS rels
UNWIND rels AS rel
WITH DISTINCT rel
WITH startNode(rel) AS start_node, endNode(rel) AS end_node
WHERE start_node.schema <> end_node.schema
RETURN start_node, end_node
I can't say that this would be faster, but here's another way to try:
MATCH (start:Col)-[*]->(node:Col)
WHERE start.property IN {property_values}
WITH collect(ID(node)) AS node_ids
MATCH (:Col)-[r]->(node:Col)
WHERE ID(node) IN node_ids
WITH DISTINCT r
RETURN startNode(r) AS start_node, endNode(r) AS end_node
I suspect that the problem in all cases is with the open-ended variable length path. I've actually asked on the Slack group to try to get a better understanding of how it works. In the meantime, for all the queries that you try I would suggest prefixing them with the PROFILE keyword to get a report from Neo4j on what parts of the query are slow.
// this is very inefficient!
MATCH (start:Col)-[*]->(node:Col)
WHERE start.property IN {property_values}
WITH distinct node
MATCH (prev)-[r]->(node)
RETURN distinct prev, node;
you might be better off with this:
MATCH (start:Col)
WHERE start.property IN {property_values}
MATCH (node:Col)
WHERE shortestPath((start)-[*]->(node)) IS NOT NULL
MATCH (prev)-[r]->(node)
RETURN distinct prev, node;

neo4j cypher, performance on specifying labels when id(n) is in conditions

has anyone tested/knows if - when querying a Neo4j database with Cypher - specifying the
MATCH node:labels
makes the selection faster even if
WHERE id(node) = x
is in place?
MATCH (n)
WHERE ID(n) = {x}
RETURN n
should be negligibly faster than
MATCH (n:MyLabel)
WHERE ID(n) = {x}
RETURN n
Both queries first get the node by internal id but while the first query returns the second filters the result on hasLabel(n:MyLabel).
It's a good example of where its possible to overuse labels. Similarly, if for the pattern (a:Person {name:"Étienne Gilson"})-[:FRIEND]->(b:Person)-[:FRIEND]->(c:Person) I know that only :Person nodes have -[:FRIEND]- relationships, there is no point in filtering b and c on that label. If a remote node should be retrieved from index then the label should be included to indicate that, i.e. -[:FRIEND]->(b:Person {name:"Jacques Maritain"}), but when no (indexed) property is included in that part of the pattern, the nodes will be reached by traversal and if only people have friends an additional filter on hasLabel(b:Person) would be pointless.
I understand this blog post to mean that filtering on a label is as cheap as a bitwise &, so performance difference should be very small.

Cypher query to find all paths with same relationship type

I'm struggling to find a single clean, efficient Cypher query that will let me identify all distinct paths emanating from a start node such that every relationship in the path is of the same type when there are many relationship types.
Here's a simple version of the model:
CREATE (a), (b), (c), (d), (e), (f), (g),
(a)-[:X]->(b)-[:X]->(c)-[:X]->(d)-[:X]->(e),
(a)-[:Y]->(c)-[:Y]->(f)-[:Y]->(g)
In this model (a) has two outgoing relationship types, X and Y. I would like to retrieve all the paths that link nodes along relationship X as well as all the paths that link nodes along relationship Y.
I can do this programmatically outside of cypher by making a series of queries, the first to
retrieve the list of outgoing relationships from the start node, and then a single query (submitted together as a batch) for each relationship. That looks like:
START n=node(1)
MATCH n-[r]->()
RETURN COLLECT(DISTINCT TYPE(r)) as rels;
followed by:
START n=node(1)
MATCH n-[:`reltype_param`*]->()
RETURN p as path;
The above satisfies my need, but requires at minimum 2 round trips to the server (again, assuming I batch together the second set of queries in one transaction).
A single-query approach that works, but is horribly inefficient is the following single Cypher query:
START n=node(1)
MATCH p = n-[r*]->() WHERE
ALL (x in RELATIONSHIPS(p) WHERE TYPE(x) = TYPE(HEAD(RELATIONSHIPS(p))))
RETURN p as path;
That query uses the ALL predicate to filter the relationships along the paths enforcing that each relationship in the path matches the first relationship in the path. This, however, is really just a filter operation on what it essentially a combinatorial explosion of all possible paths --- much less efficient than traversing a relationship of a known, given type first.
I feel like this should be possible with a single Cypher query, but I have not been able to get it right.
Here's a minor optimization, at least non-matching the paths will fail fast:
MATCH n-[r]->()
WITH distinct type(r) AS t
MATCH p = n-[r*]->()
WHERE type(r[-1]) = t // last entry matches
RETURN p AS path
This is probably one of those things that should be in the Java API if you want it to be really performant, though.

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