Matlab image processing - replacing dark pixels with neighboring pixels - image-processing

I am doing some image processing of the retina images.. I need to replace the blood vessels with background pixels so that I can focus on other aspects of retina. I could not figure out a way to do this. I am using matlab. any suggestions?

Having worked extensively with retinal images, I can tell you that what you're proposing is a complex problem in itself. Sure, if you just want a crude method, you can use imdilate. But that will affect your entire image, and other structures in the image will change appearance. Something, that is not desirable.
However, if you want to do it properly, you will first need to segment all the blood vessels and create a binary mask. Once you have a binary mask, it's up to you how to fill up the vessel regions. You can either interpolate from the boundaries or calculate a background image and replace the vessel regions with pixels from the background image, etc.
Segmentation of the blood vessels is a challenging problem and you will find a lot of literature concerning that on the internet. Ultimately, you will have to choose how accurate a segmentation you want and build your algorithm accordingly.

imdilate should do what you want, since it replaces each pixel with the maximum of its neighbors. For more detailed suggestions, I'd need to see images.

Related

Image Segmentation/Background Subtraction

My current project is to calculate the surface area of the paste covered on the cylinder.
Refer the images below. The images below are cropped from the original images taken via a phone camera.
I am thinking terms like segmentation but due to the light reflection and shadows a simple segmentation won’t work out.
Can anyone tell me how to find the surface area covered by paste on the cylinder?
First I'd simplify the problem by rectifying the perspective effect (you may need to upscale the image to not lose precision here).
Then I'd scan vertical lines across the image.
Further, you can simplify the problem by segmentation of two classes of pixels, base and painted. Make some statistical analysis to find the range for the larger region, consisting of base pixels. Probably will make use of mathematical median of all pixels.
Then you expand the color space around this representative pixel, until you find the highest color distance gap. Repeat the procedure to retrieve the painted pixels. There's other image processing routines you may have to do such as smoothing out the noise, removing outliers and background, etc.

Image Segmentation for Color Analysis in OpenCV

I am working on a project that requires me to:
Look at images that contain relatively well-defined objects, e.g.
and pick out the color of n-most (it's generic, could be 1,2,3, etc...) prominent objects in some space (whether it be RGB, HSV, whatever) and return it.
I am looking into ways to segment images like this into the independent objects. Once that's done, I'm under the impression that it won't be particularly difficult to find the contours of the segments and analyze them for average or centroid color, etc...
I looked briefly into the Watershed algorithm, which seems like it could work, but I was unsure of how to generate the marker image for an indeterminate number of blobs.
What's the best way to segment such an image, and if it's using Watershed, what's the best way to generate the corresponding marker image of integers?
Check out this possible approach:
Efficient Graph-Based Image Segmentation
Pedro F. Felzenszwalb and Daniel P. Huttenlocher
Here's what it looks like on your image:
I'm not an expert but I really don't see how the Watershed algorithm can be very useful to your segmentation problem.
From my limited experience/exposure to this kind of problems, I would think that the way to go would be to try a sliding-windows approach to segmentation. Basically this entails walking the image using a window of a set size, and attempting to determine if the window encompasses background vs. an object. You will want to try different window sizes and steps.
Doing this should allow you to detect the object in the image, presuming that the images contain relatively well defined objects. You might also attempt to perform segmentation after converting the image to black and white with a certain threshold the gives good separation of background vs. objects.
Once you've identified the object(s) via the sliding window you can attempt to determine the most prominent color using one of the methods you mentioned.
UPDATE
Based on your comment, here's another potential approach that might work for you:
If you believe the objects will have mostly uniform color you might attempt to process the image to:
remove noise;
map original image to reduced color space (i.e. 256 or event 16 colors)
detect connected components based on pixel color and determine which ones are large enough
You might also benefit from re-sampling the image to lower resolution (i.e. if the image is 1024 x 768 you might reduce it to 256 x 192) to help speed up the algorithm.
The only thing left to do would be to determine which component is the background. This is where it might make sense to also attempt to do the background removal by converting to black/white with a certain threshold.

blurred image removal in an image database

I have a dataset of about 2000 images. This database contains some blurred images.
How can I automatically remove the blurred images from this database?
I read about fourier transformation to remove the blurred images. First I need to transform my images into fourier domain and then by applying some threshold I will be able to identify the blurred images. Could anybody give me some sample code in matlab for this? I don't know how to determine the threshold. Are there any way to determining this threshold?
This task is really not so simple, if you remove all the images that doesn't contain high frequencies you will end up removing many images that contain smooth scenes even though they are not blurred.
There is no 100% in computer vision, the best thing for you (in my opinion) is to make a human aided software, your software should suggest on the images that it thinks should be removed, but the final call must be made by a human being.

Balancing contrast and brightness between stitched images

I'm working on an image stitching project, and I understand there's different approaches on dealing with contrast and brightness of an image. I could of course deal with this issue before I even stitched the image, but yet the result is not as consistent as I would hope. So my question is if it's possible by any chance to "balance" or rather "equalize" the contrast and brightness in color pictures after the stitching has taken place?
You want to determine the histogram equalization function not from the entire images, but on the zone where they will touch or overlap. You obviously want to have identical histograms in the overlap area, so this is where you calculate the functions. You then apply the equalization functions that accomplish this on the entire images. If you have more than two stitches, you still want to have global equalization beforehand, and then use a weighted application of the overlap-equalizing functions that decreases the impact as you move away from the stitched edge.
Apologies if this is all obvious to you already, but your general question leads me to a general answer.
You may want to have a look at the Exposure Compensator class provided by OpenCV.
Exposure compensation is done in 3 steps:
Create your exposure compensator
Ptr<ExposureCompensator> compensator = ExposureCompensator::createDefault(expos_comp_type);
You input all of your images along with the top left corners of each of them. You can leave the masks completely white by default unless you want to specify certain parts of the image to work on.
compensator->feed(corners, images, masks);
Now it has all the information of how the images overlap, you can compensate each image individually
compensator->apply(image_index, corners[image_index], image, mask);
The compensated image will be stored in image

why we should use gray scale for image processing

I think this can be a stupid question but after read a lot and search a lot about image processing every example I see about image processing uses gray scale to work
I understood that gray scale images use just one channel of color, that normally is necessary just 8 bit to be represented, etc... but, why use gray scale when we have a color image? What are the advantages of a gray scale? I could imagine that is because we have less bits to treat but even today with faster computers this is necessary?
I am not sure if I was clear about my doubt, I hope someone can answer me
thank you very much
As explained by John Zhang:
luminance is by far more important in distinguishing visual features
John also gives an excellent suggestion to illustrate this property: take a given image and separate the luminance plane from the chrominance planes.
To do so you can use ImageMagick separate operator that extracts the current contents of each channel as a gray-scale image:
convert myimage.gif -colorspace YCbCr -separate sep_YCbCr_%d.gif
Here's what it gives on a sample image (top-left: original color image, top-right: luminance plane, bottom row: chrominance planes):
To elaborate a bit on deltheil's answer:
Signal to noise. For many applications of image processing, color information doesn't help us identify important edges or other features. There are exceptions. If there is an edge (a step change in pixel value) in hue that is hard to detect in a grayscale image, or if we need to identify objects of known hue (orange fruit in front of green leaves), then color information could be useful. If we don't need color, then we can consider it noise. At first it's a bit counterintuitive to "think" in grayscale, but you get used to it.
Complexity of the code. If you want to find edges based on luminance AND chrominance, you've got more work ahead of you. That additional work (and additional debugging, additional pain in supporting the software, etc.) is hard to justify if the additional color information isn't helpful for applications of interest.
For learning image processing, it's better to understand grayscale processing first and understand how it applies to multichannel processing rather than starting with full color imaging and missing all the important insights that can (and should) be learned from single channel processing.
Difficulty of visualization. In grayscale images, the watershed algorithm is fairly easy to conceptualize because we can think of the two spatial dimensions and one brightness dimension as a 3D image with hills, valleys, catchment basins, ridges, etc. "Peak brightness" is just a mountain peak in our 3D visualization of the grayscale image. There are a number of algorithms for which an intuitive "physical" interpretation helps us think through a problem. In RGB, HSI, Lab, and other color spaces this sort of visualization is much harder since there are additional dimensions that the standard human brain can't visualize easily. Sure, we can think of "peak redness," but what does that mountain peak look like in an (x,y,h,s,i) space? Ouch. One workaround is to think of each color variable as an intensity image, but that leads us right back to grayscale image processing.
Color is complex. Humans perceive color and identify color with deceptive ease. If you get into the business of attempting to distinguish colors from one another, then you'll either want to (a) follow tradition and control the lighting, camera color calibration, and other factors to ensure the best results, or (b) settle down for a career-long journey into a topic that gets deeper the more you look at it, or (c) wish you could be back working with grayscale because at least then the problems seem solvable.
Speed. With modern computers, and with parallel programming, it's possible to perform simple pixel-by-pixel processing of a megapixel image in milliseconds. Facial recognition, OCR, content-aware resizing, mean shift segmentation, and other tasks can take much longer than that. Whatever processing time is required to manipulate the image or squeeze some useful data from it, most customers/users want it to go faster. If we make the hand-wavy assumption that processing a three-channel color image takes three times as long as processing a grayscale image--or maybe four times as long, since we may create a separate luminance channel--then that's not a big deal if we're processing video images on the fly and each frame can be processed in less than 1/30th or 1/25th of a second. But if we're analyzing thousands of images from a database, it's great if we can save ourselves processing time by resizing images, analyzing only portions of images, and/or eliminating color channels we don't need. Cutting processing time by a factor of three to four can mean the difference between running an 8-hour overnight test that ends before you get back to work, and having your computer's processors pegged for 24 hours straight.
Of all these, I'll emphasize the first two: make the image simpler, and reduce the amount of code you have to write.
I disagree with the implication that gray scale images are always better than color images; it depends on the technique and the overall goal of the processing. For example, if you wanted to count the bananas in an image of a fruit bowl image, then it's much easier to segment when you have a colored image!
Many images have to be in grayscale because of the measuring device used to obtain them. Think of an electron microscope. It's measuring the strength of an electron beam at various space points. An AFM is measuring the amount of resonance vibrations at various points topologically on a sample. In both cases, these tools are returning a singular value- an intensity, so they implicitly are creating a gray-scale image.
For image processing techniques based on brightness, they often can be applied sufficiently to the overall brightness (grayscale); however, there are many many instances where having a colored image is an advantage.
Binary might be too simple and it could not represent the picture character.
Color might be too much and affect the processing speed.
Thus, grayscale is chosen, which is in the mid of the two ends.
First of starting image processing whether on gray scale or color images, it is better to focus on the applications which we are applying. Unless and otherwise, if we choose one of them randomly, it will create accuracy problem in our result. For example, if I want to process image of waste bin, I prefer to choose gray scale rather than color. Because in the bin image I want only to detect the shape of bin image using optimized edge detection. I could not bother about the color of image but I want to see rectangular shape of the bin image correctly.

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