I just downloaded neo4j enterprise a few backs ago and had it set it up successfully to run on the cloud (EC2). It stored about 50 nodes in a span of 3 days, was just doing simple testing and playing with the database commands.
Today it suddenly terminated itself and 'failed to start'. On inspecting, message.log shows this:
/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db.names non clean shutdown detected
2013-05-04 05:39:29.957+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2013-05-04 05:39:29.959+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db non clean shutdown detected
2013-05-04 05:39:29.960+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2013-05-04 05:39:29.960+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.strings non clean shutdown detected
2013-05-04 05:39:29.960+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.strings] brickCount=3 brickSize=28288b mappedMem=28311552b (storeSize=84864b)
2013-05-04 05:39:29.961+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index.keys non clean shutdown detected
2013-05-04 05:39:29.961+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index.keys] brickCount=0 brickSize=0b mappedMem=0b (storeSize=874b)
2013-05-04 05:39:29.962+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index non clean shutdown detected
2013-05-04 05:39:29.962+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index] brickCount=0 brickSize=0b mappedMem=0b (storeSize=198b)
2013-05-04 05:39:29.963+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.arrays non clean shutdown detected
2013-05-04 05:39:29.963+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.arrays] brickCount=1 brickSize=32384b mappedMem=32505856b (storeSize=32384b)
2013-05-04 05:39:29.972+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db non clean shutdown detected
2013-05-04 05:39:29.972+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db] brickCount=12 brickSize=33538b mappedMem=33554432b (storeSize=402456b)
2013-05-04 05:39:29.978+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshipstore.db non clean shutdown detected
2013-05-04 05:39:29.978+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshipstore.db] brickCount=0 brickSize=40887b mappedMem=40894464b (storeSize=33b)
2013-05-04 05:39:29.978+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db.labels non clean shutdown detected
2013-05-04 05:39:29.978+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db.labels] brickCount=0 brickSize=0b mappedMem=0b (storeSize=68b)
2013-05-04 05:39:29.980+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db non clean shutdown detected
2013-05-04 05:39:29.980+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db] brickCount=3 brickSize=8386b mappedMem=8388608b (storeSize=25158b)
2013-05-04 05:39:29.981+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.schemastore.db non clean shutdown detected
2013-05-04 05:39:29.981+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2013-05-04 05:39:29.983+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore non clean shutdown detected
2013-05-04 05:39:29.983+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=54b)
2013-05-04 05:39:30.023+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Non clean shutdown detected on log [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/nioneo_logical.log.1]. Recovery started ...
2013-05-04 05:39:30.029+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: [/usr/local/neo4j-enterprise-2.0.0/data/graph.db/nioneo_logical.log.1] logVersion=8 with committed tx=503
2013-05-04 05:39:30.071+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db.names hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.071+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshiptypestore.db hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.071+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.strings hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.071+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index.keys hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.071+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.index hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.075+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db.arrays hit=0 miss=2 switches=0 ooe=0
2013-05-04 05:39:30.080+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.propertystore.db hit=0 miss=33 switches=0 ooe=0
2013-05-04 05:39:30.080+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.relationshipstore.db hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.080+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db.labels hit=0 miss=0 switches=0 ooe=0
2013-05-04 05:39:30.081+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.nodestore.db hit=0 miss=33 switches=0 ooe=0
2013-05-04 05:39:30.081+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore.schemastore.db hit=0 miss=1 switches=0 ooe=0
2013-05-04 05:39:30.083+0000 INFO [o.n.k.i.n.s.StoreFactory]: /usr/local/neo4j-enterprise-2.0.0/data/graph.db/neostore hit=0 miss=3 switches=0 ooe=0
2013-05-04 05:39:30.084+0000 INFO [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics START ---
2013-05-04 05:39:30.084+0000 INFO [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics END ---
2013-05-04 05:39:30.085+0000 INFO [o.n.k.EmbeddedGraphDatabase]: Startup failed: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#58e5f46e' was successfully initialized, but failed to start. Please see attached cause exception.: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#5b0d95cd' was successfully initialized, but failed to start. Please see attached cause exception.: NodeRecord[1231] not in use
enter code here
the /logs folder contains console.log which shows this:
(NeoStoreXaDataSource.java:310)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 15 more
5/4/13 5:35:31 AM org.neo4j.server.CommunityBootstrapper SEVERE: Failed to start Neo Server on port [7474]
5/4/13 5:39:28 AM org.neo4j.server.CommunityBootstrapper WARNING: WARNING! You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
5/4/13 5:39:28 AM org.neo4j.server.AbstractNeoServer INFO: Setting startup timeout to: 120000ms based on -1
Detected incorrectly shut down database, performing recovery..
05:39:29.132 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - WARNING! You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
5/4/13 5:39:30 AM org.neo4j.server.CommunityBootstrapper SEVERE:
java.lang.RuntimeException: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#58e5f46e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:314)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:89)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:205)
at org.neo4j.kernel.impl.recovery.StoreRecoverer.recover(StoreRecoverer.java:115)
at org.neo4j.server.preflight.PerformRecoveryIfNecessary.run(PerformRecoveryIfNecessary.java:59)
at org.neo4j.server.preflight.PreFlightTasks.run(PreFlightTasks.java:70)
at org.neo4j.server.AbstractNeoServer.runPreflightTasks(AbstractNeoServer.java:286)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:129)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:86)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:49)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#58e5f46e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
aused by: org.neo4j.kernel.impl.nioneo.store.InvalidRecordException
... 10 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#5b0d95cd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:128)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: org.neo4j.kernel.impl.nioneo.store.InvalidRecordException: NodeRecord[1231] not in use
at org.d incorrectly shut down database, performing recovery..
05:39:29.132 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - WARNING! You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
5/4/13 5:39:30 AM org.neo4j.server.CommunityBootstrapper SEVERE:
java.lang.RuntimeException: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#58e5f46e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:314)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:89)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:205)
at org.neo4j.kernel.impl.recovery.StoreRecoverer.recover(StoreRecoverer.java:115)
at org.neo4j.server.preflight.PerformRecoveryIfNecessary.run(PerformRecoveryIfNecessary.java:59)
at org.neo4j.server.preflight.PreFlightTasks.run(PreFlightTasks.java:70)
at org.neo4j.server.AbstractNeoServer.runPreflightTasks(AbstractNeoServer.java:286)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:129)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:86)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:49)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#58e5f46e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
aused by: org.neo4j.kernel.impl.nioneo.store.InvalidRecordException
... 10 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#5b0d95cd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:128)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: org.neo4j.kernel.impl.nioneo.store.InvalidRecordException: NodeRecord[1231] not in use
at org.neo4j.kernel.impl.nioneo.store.NodeStore.getRecord(NodeStore.java:239)
at org.neo4j.kernel.impl.nioneo.store.NodeStore.getRecord(NodeStore.java:112)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.gatherUpdatesFromPropertyCommands(WriteTransaction.java:692)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.convertIntoLogicalPropertyUpdates(WriteTransaction.java:669)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.applyCommit(WriteTransaction.java:619)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.doCommit(WriteTransaction.java:561)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:321)
eo4j.kernel.impl.nioneo.store.NodeStore.getRecord(NodeStore.java:112)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.gatherUpdatesFromPropertyCommands(WriteTransaction.java:692)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.convertIntoLogicalPropertyUpdates(WriteTransaction.java:669)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.applyCommit(WriteTransaction.java:619)
at org.neo4j.kernel.impl.nioneo.xa.WriteTransaction.doCommit(WriteTransaction.java:561)
at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:321)
at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPhaseCommit(XaResourceManager.java:407)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseCommitEntry(XaLogicalLog.java:562)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:437)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:771)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:206)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:161)
at org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:64)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:310)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 15 more
5/4/13 5:39:30 AM org.neo4j.server.CommunityBootstrapper SEVERE: Failed to start Neo Server on port [7474]
I'm not a JAVA programmer so I do not know how to debug this issue. I mainly use node-neo4j (node.js) to talk to my neo4j server.
Please help thank you.
Check out this post in the Neo4j google group.
https://groups.google.com/forum/#!topic/neo4j/3BVM4kmso5c
While it may work for a while on Java 6, eventually you are going to encounter some bugs due to wrong JDK versions. Update to Java 7 and the problem should disappear.
If it doesn't, please also make sure you are not running OpenJDK but Oracle JDK.
The exception says:
You are using an unsupported Java runtime. Please use Oracle(R)
Java(TM) Runtime Environment 7.
You are probably running java version 5 or 6. You can download Java SE 7 from the oracle website.
Related
I install kylin by https://github.com/cas-packone/ambari-kylin-service/
2020-01-13 01:52:16,673 INFO [main] utils.Compatibility:41 : Running in ZooKeeper 3.4.x compatibility mode
2020-01-13 01:52:16,710 INFO [main] imps.CuratorFrameworkImpl:284 : Starting
2020-01-13 01:52:16,715 INFO [main] zookeeper.ZooKeeper:438 : Initiating client connection, connectString=node1:2181 sessionTimeout=120000 watcher=org.apache.curator.ConnectionState#6c000e0c
2020-01-13 01:52:16,717 INFO [main-SendThread(node1:2181)] zookeeper.ClientCnxn:1013 : Opening socket connection to server node1/127.0.0.1:2181. Will not attempt to authenticate using SASL (unknown error)
2020-01-13 01:52:16,719 INFO [main-SendThread(node1:2181)] zookeeper.ClientCnxn:856 : Socket connection established, initiating session, client: /127.0.0.1:49768, server: node1/127.0.0.1:2181
2020-01-13 01:52:16,721 INFO [main-SendThread(node1:2181)] zookeeper.ClientCnxn:1273 : Session establishment complete on server node1/127.0.0.1:2181, sessionid = 0x16f798087cc03af, negotiated timeout = 60000
2020-01-13 01:52:16,722 INFO [main] imps.CuratorFrameworkImpl:326 : Default schema
2020-01-13 01:52:16,725 DEBUG [main] util.ZookeeperDistributedLock:142 : 6521#node1 trying to lock /kylin/kylin_metadata/create_htable/kylin_metadata/lock
2020-01-13 01:52:16,730 INFO [main-EventThread] state.ConnectionStateManager:237 : State change: CONNECTED
Exception in thread "main" java.lang.IllegalArgumentException: Failed to find metadata store by url: kylin_metadata#hbase
at org.apache.kylin.common.persistence.ResourceStore.createResourceStore(ResourceStore.java:89)
at org.apache.kylin.common.persistence.ResourceStore.getStore(ResourceStore.java:101)
at org.apache.kylin.rest.service.AclTableMigrationTool.checkIfNeedMigrate(AclTableMigrationTool.java:94)
at org.apache.kylin.tool.AclTableMigrationCLI.main(AclTableMigrationCLI.java:41)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.kylin.common.persistence.ResourceStore.createResourceStore(ResourceStore.java:83)
... 3 more
Caused by: java.lang.NoSuchMethodError: org.apache.curator.framework.api.CreateBuilder.creatingParentsIfNeeded()Lorg/apache/curator/framework/api/ProtectACLCreateModePathAndBytesable;
at org.apache.kylin.storage.hbase.util.ZookeeperDistributedLock.lock(ZookeeperDistributedLock.java:145)
at org.apache.kylin.storage.hbase.util.ZookeeperDistributedLock.lock(ZookeeperDistributedLock.java:166)
at org.apache.kylin.storage.hbase.HBaseConnection.createHTableIfNeeded(HBaseConnection.java:305)
at org.apache.kylin.storage.hbase.HBaseResourceStore.createHTableIfNeeded(HBaseResourceStore.java:110)
at org.apache.kylin.storage.hbase.HBaseResourceStore.<init>(HBaseResourceStore.java:91)
... 8 more
2020-01-13 01:52:16,772 INFO [Curator-Framework-0] imps.CuratorFrameworkImpl:924 : backgroundOperationsLoop exiting
2020-01-13 01:52:16,773 INFO [Thread-1] zookeeper.ReadOnlyZKClient:344 : Close zookeeper connection 0x7b94089b to node1:2181
2020-01-13 01:52:16,775 INFO [ReadOnlyZKClient-node1:2181#0x7b94089b] zookeeper.ZooKeeper:692 : Session: 0x16f798087cc03ae closed
2020-01-13 01:52:16,775 INFO [ReadOnlyZKClient-node1:2181#0x7b94089b-EventThread] zookeeper.ClientCnxn:517 : EventThread shut down
2020-01-13 01:52:16,777 INFO [Thread-4] zookeeper.ZooKeeper:692 : Session: 0x16f798087cc03af closed
2020-01-13 01:52:16,777 INFO [main-EventThread] zookeeper.ClientCnxn:517 : EventThread shut down
ERROR: Unknown error. Please check full log.
I'm trying to run confluence image on a docker container. This behavior is Intermittent - most of the time I can't run it, but at sometimes I can.
After downloading the image I run these commands in order put confluence online:
sudo chown -R daemon /data/confluence
sudo chown -R daemon /var/atlassian/application-data/confluence
docker run -v /data/your-confluence-home:/var/atlassian/application-data/confluence --name="confluence" -d -p 8090:8090 -p 8091:8091 atlassian/confluence-server
But then, I get this error on docker logs confluence
If you encounter issues starting up Confluence, please see the Installation guide at http://confluence.atlassian.com/display/DOC/Confluence+Installation+Guide
Server startup logs are located in /opt/atlassian/confluence/logs/catalina.out
---------------------------------------------------------------------------
Using Java: /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java
2017-05-23 15:33:41,519 INFO [main] [atlassian.confluence.bootstrap.SynchronyProxyWatchdog] A Context element for ${confluence.context.path}/synchrony-proxy is found in /opt/atlassian/confluence/conf/server.xml. No further action is required
---------------------------------------------------------------------------
23-May-2017 15:33:42.013 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8090"]
23-May-2017 15:33:42.026 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
23-May-2017 15:33:42.028 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 381 ms
23-May-2017 15:33:42.033 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Tomcat-Standalone
23-May-2017 15:33:42.033 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.41
SLF4J: A number (1) of logging calls during the initialization phase have been intercepted and are
SLF4J: now being replayed. These are subject to the filtering rules of the underlying logging system.
SLF4J: See also http://www.slf4j.org/codes.html#replay
23-May-2017 15:33:43.517 INFO [localhost-startStop-2] org.apache.catalina.core.ApplicationContext.log Spring WebApplicationInitializers detected on classpath: [com.atlassian.synchrony.proxy.SynchronyDispatcherServletInitializer#335dedfb]
23-May-2017 15:33:43.814 INFO [localhost-startStop-2] org.apache.catalina.core.ApplicationContext.log Initializing Spring FrameworkServlet 'dispatcher'
23-May-2017 15:33:43.814 INFO [localhost-startStop-2] org.springframework.web.servlet.DispatcherServlet.initServletBean FrameworkServlet 'dispatcher': initialization started
23-May-2017 15:33:43.819 INFO [localhost-startStop-2] org.springframework.web.context.support.AnnotationConfigWebApplicationContext.prepareRefresh Refreshing WebApplicationContext for namespace 'dispatcher-servlet': startup date [Tue May 23 15:33:43 UTC 2017]; root of context hierarchy
23-May-2017 15:33:43.864 INFO [localhost-startStop-2] org.springframework.web.context.support.AnnotationConfigWebApplicationContext.loadBeanDefinitions Registering annotated classes: [class com.atlassian.synchrony.proxy.websocket.WebSocketConfig,class com.atlassian.synchrony.proxy.web.SynchronyWebMvcConfig]
2017-05-23 15:33:44,007 INFO [localhost-startStop-1] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 6.2.0 [build 7111 based on commit hash 583f3f4010922d699723a091097524472954c767] - synchrony version 0.3.1-release-confluence_6.1-e20fb944
23-May-2017 15:33:44.371 INFO [localhost-startStop-2] org.springframework.scheduling.concurrent.ThreadPoolTaskScheduler.initialize Initializing ExecutorService 'defaultSockJsTaskScheduler'
23-May-2017 15:33:44.670 INFO [localhost-startStop-2] org.springframework.web.socket.server.support.WebSocketHandlerMapping.registerHandler Mapped URL path [/sockjs/v1/**] onto handler of type [class org.springframework.web.socket.sockjs.support.SockJsHttpRequestHandler]
23-May-2017 15:33:44.854 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerMapping.register Mapped "{[/healthcheck]}" onto public com.atlassian.synchrony.proxy.web.HealthCheckResult com.atlassian.synchrony.proxy.web.SynchronyProxyRestController.getSynchronyProxyInfo()
23-May-2017 15:33:44.855 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerMapping.register Mapped "{[/reload],methods=[PUT]}" onto public org.springframework.http.ResponseEntity com.atlassian.synchrony.proxy.web.SynchronyProxyRestController.reloadConfiguration(com.atlassian.synchrony.proxy.web.SynchronyProxyConfigPayload)
23-May-2017 15:33:44.873 INFO [localhost-startStop-2] org.springframework.web.servlet.handler.SimpleUrlHandlerMapping.registerHandler Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.DefaultServletHttpRequestHandler]
23-May-2017 15:33:44.939 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.initControllerAdviceCache Looking for #ControllerAdvice: WebApplicationContext for namespace 'dispatcher-servlet': startup date [Tue May 23 15:33:43 UTC 2017]; root of context hierarchy
23-May-2017 15:33:45.056 INFO [localhost-startStop-2] org.springframework.context.support.DefaultLifecycleProcessor.start Starting beans in phase 2147483647
23-May-2017 15:33:45.094 INFO [localhost-startStop-2] org.springframework.web.servlet.DispatcherServlet.initServletBean FrameworkServlet 'dispatcher': initialization completed in 1279 ms
2017-05-23 15:33:46,688 WARN [localhost-startStop-1] [com.atlassian.config.ApplicationConfig] setApplicationHome Application home does not exist. Creating directory: /var/atlassian/application-data/confluence/shared-home
2017-05-23 15:33:46,783 ERROR [localhost-startStop-1] [atlassian.config.bootstrap.DefaultAtlassianBootstrapManager] init Home is not configured properly:
com.atlassian.config.ConfigurationException: Couldn't save confluence.cfg.xml to /var/atlassian/application-data/confluence directory.
at com.atlassian.config.xml.AbstractDom4jXmlConfigurationPersister.saveDocument(AbstractDom4jXmlConfigurationPersister.java:86)
at com.atlassian.config.xml.DefaultDom4jXmlConfigurationPersister.save(DefaultDom4jXmlConfigurationPersister.java:24)
at com.atlassian.config.ApplicationConfig.save(ApplicationConfig.java:330)
at com.atlassian.confluence.setup.DefaultBootstrapManager.populateSynchronyConfiguration(DefaultBootstrapManager.java:298)
at com.atlassian.confluence.setup.DefaultBootstrapManager.afterConfigurationLoaded(DefaultBootstrapManager.java:509)
at com.atlassian.config.bootstrap.DefaultAtlassianBootstrapManager.init(DefaultAtlassianBootstrapManager.java:71)
at com.atlassian.config.util.BootstrapUtils.init(BootstrapUtils.java:36)
at com.atlassian.confluence.setup.ConfluenceConfigurationListener.initialiseBootstrapContext(ConfluenceConfigurationListener.java:127)
at com.atlassian.confluence.setup.ConfluenceConfigurationListener.contextInitialized(ConfluenceConfigurationListener.java:60)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4853)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5314)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:145)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1408)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1398)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.io.IOException: Permission denied
at java.io.UnixFileSystem.createFileExclusively(Native Method)
at java.io.File.createTempFile(File.java:2024)
at com.atlassian.config.xml.AbstractDom4jXmlConfigurationPersister.saveDocumentAtomically(AbstractDom4jXmlConfigurationPersister.java:92)
at com.atlassian.config.xml.AbstractDom4jXmlConfigurationPersister.saveDocument(AbstractDom4jXmlConfigurationPersister.java:82)
... 17 more
What am I doing wrong?
Have you tried via named volume (if using a docker version >= 1.9)?
$ sudo docker volume create --name confluenceVolume
$ sudo docker run -v confluenceVolume:/var/atlassian/application-data/confluence --name="confluence" -d -p 8090:8090 -p 8091:8091 atlassian/confluence-server
Add ENTRYPOINT script and use it. Example - https://github.com/AfsmNGhr/dockemacs/blob/master/Dockerfile#L34. See also - http://www.johnzaccone.io/entrypoint-vs-cmd-back-to-basics/.
I know this question has been asked here: GraphAware Neo4j UUID not working. Nobody has answered it and I cant comment to ask that guy because I dont have enough reputation. I have all both the server framework and the uuid jar files in plugins folder and this is my config:
com.graphaware.runtime.enabled=true
com.graphaware.module.UIDM.1=com.graphaware.module.uuid.UuidBootstrapper
com.graphaware.module.UIDM.uuidProperty=uuid
For some reason when I create a node. I'm not getting anything.
This is my log output:
2017-01-13 17:59:47.762+0000 INFO Neo4j Server shutdown initiated by request
2017-01-13 17:59:47.789+0000 INFO [c.g.s.f.b.GraphAwareServerBootstrapper] stopped
2017-01-13 17:59:47.789+0000 INFO Stopping...
2017-01-13 17:59:47.835+0000 INFO Shutting down GraphAware Runtime...
2017-01-13 17:59:47.836+0000 INFO Shutting down module UIDM
2017-01-13 17:59:47.836+0000 INFO Terminating task scheduler...
2017-01-13 17:59:47.836+0000 INFO Task scheduler terminated successfully.
2017-01-13 17:59:47.836+0000 INFO GraphAware Runtime shut down.
2017-01-13 17:59:47.846+0000 INFO Stopped.
2017-01-13 17:59:49.770+0000 INFO Starting...
2017-01-13 17:59:55.480+0000 INFO Bolt enabled on localhost:7687.
2017-01-13 18:00:03.164+0000 INFO [c.g.r.b.RuntimeKernelExtension] GraphAware Runtime enabled, bootstrapping...
2017-01-13 18:00:03.177+0000 INFO Running in a single-node architecture (Neo4j Community)
2017-01-13 18:00:03.186+0000 INFO [c.g.r.b.RuntimeKernelExtension] Bootstrapping module with order 1, ID UIDM, using com.graphaware.module.uuid.UuidBootstrapper
2017-01-13 18:00:03.275+0000 INFO uuidProperty set to uuid
2017-01-13 18:00:03.285+0000 INFO Registering module UIDM with GraphAware Runtime.
2017-01-13 18:00:03.286+0000 INFO [c.g.r.b.RuntimeKernelExtension] GraphAware Runtime bootstrapped, starting the Runtime...
2017-01-13 18:00:07.046+0000 INFO Starting GraphAware...
2017-01-13 18:00:07.047+0000 INFO Loading module metadata...
2017-01-13 18:00:07.047+0000 INFO Loading metadata for module UIDM
2017-01-13 18:00:07.098+0000 INFO Module UIDM seems to have been registered before, metadata loaded successfully.
2017-01-13 18:00:07.098+0000 INFO Module UIDM seems to have changed configuration since last run, will try to re-initialize...
2017-01-13 18:00:07.099+0000 INFO InitializeUntil set to 9223372036854775807 and it is 1484330407098. Will re-initialize.
2017-01-13 18:00:08.797+0000 INFO Started.
2017-01-13 18:00:09.044+0000 INFO [c.g.s.f.b.GraphAwareServerBootstrapper] started
2017-01-13 18:00:09.045+0000 INFO Mounted unmanaged extension [com.graphaware.server] at [/graphaware]
2017-01-13 18:00:14.228+0000 INFO Module metadata loaded.
2017-01-13 18:00:14.228+0000 INFO Starting transaction-driven modules...
2017-01-13 18:00:14.229+0000 INFO Transaction-driven modules started.
2017-01-13 18:00:14.230+0000 INFO There are no timer-driven runtime modules. Not scheduling any tasks.
2017-01-13 18:00:14.230+0000 INFO GraphAware started.
2017-01-13 18:00:14.230+0000 INFO [c.g.r.b.RuntimeKernelExtension] GraphAware Runtime automatically started.
2017-01-13 18:00:14.268+0000 INFO Mounting GraphAware Framework at /graphaware
2017-01-13 18:00:14.283+0000 INFO Will try to scan the following packages: {com.**.graphaware.**,org.**.graphaware.**,net.**.graphaware.**}
2017-01-13 18:00:15.944+0000 INFO Remote interface available at http://localhost:7474/
I use brew install neo4j, when i'm trying to start on terminal by neo4j start, it keep loading forever as following.
$ neo4j start Using additional JVM arguments: -server
-XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties
-Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -XX:-OmitStackTraceInFastThrow -Dneo4j.ext.udc.source=homebrew
-Djava.awt.headless=true Starting Neo4j Server...WARNING: not changing user process [9320]... waiting for server to be ready ........................................................................... ........................................................................... ........................................................................... ......................................................................
Failed to start within 120 seconds.
Neo4j Server may have failed to start, please check the logs.
I checked some logs from neo4j already ...but it show nothing error
log messgea from /usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/messages.log
2015-05-21 06:46:44.248+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2015-05-21 06:46:44.248+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore.relationshipgroupstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=25b)
2015-05-21 06:46:44.249+0000 INFO [o.n.k.i.n.s.StoreFactory]: [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=81b)
2015-05-21 06:46:44.310+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2015-05-21 06:46:44.333+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: No lucene scan store index found, this might just be first use. Preparing to rebuild.
2015-05-21 06:46:44.414+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Opened logical log [/usr/local/Cellar/neo4j/2.1.6/libexec/data/graph.db/nioneo_logical.log.1] version=0, lastTxId=1 (clean)
2015-05-21 06:46:44.417+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Rebuilding lucene scan store, this may take a while
2015-05-21 06:46:44.418+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Lucene scan store rebuilt (roughly -1 nodes)
2015-05-21 06:46:44.421+0000 INFO [o.n.k.i.t.TxManager]: TM new log: tm_tx_log.1
2015-05-21 06:46:44.425+0000 INFO [o.n.k.i.t.KernelHealth]: Kernel health set to OK
log message from /usr/local/Cellar/neo4j/2.1.6/libexec/data/log/console.log
2015-05-21 06:46:43.878+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
2015-05-21 06:57:03.825+0000 INFO [API] Successfully shutdown Neo4j Server.
I try to use brew to re-install neo4j, but it doesn't help.
i'm using mac machine.
java version /Library/Java/JavaVirtualMachines/jdk1.7.0_71.jdk/Contents/Home/bin/java
Can you try to run bin/neo4j console to let it finish the startup.
Probably it is creating / updating an index or an internal structure that takes longer than the 120s timeout?
see
2015-05-21 06:46:44.417+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Rebuilding lucene scan store, this may take a while
2015-05-21 06:46:44.418+0000 INFO [o.n.k.a.i.i.LuceneLabelScanStore]: Lucene scan store rebuilt (roughly -1 nodes)
The server had been running fine and dandy but suddenly stopped. Tried restarting but that didn't help. This is what the log says:
2015-02-18 15:07:58.092+0000 INFO [o.n.k.i.DiagnosticsManager]: --- SHUTDOWN diagnostics END ---
2015-02-18 15:07:58.336+0000 ERROR [o.n.s.CommunityBootstrapper]: Failed to start Neo Server on port [7474]
org.neo4j.server.ServerStartupException: Starting Neo4j Server failed: Error starting org.neo4j.kernel.EmbeddedGraphDatabase, /var/lib/neo4j-community-2.1.4/data/graph.db
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:226) ~[neo4j-server-2.1.4.jar:2.1.4]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108) [neo4j-server-2.1.4.jar:2.1.4]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62) [neo4j-server-2.1.4.jar:2.1.4]
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.EmbeddedGraphDatabase, /var/lib/neo4j-community-2.1.4/data/graph.db
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:366) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.impl.recovery.StoreRecoverer.recover(StoreRecoverer.java:123) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.server.preflight.PerformRecoveryIfNecessary.run(PerformRecoveryIfNecessary.java:65) ~[neo4j-server-2.1.4.jar:2.1.4]
at org.neo4j.server.preflight.PreFlightTasks.run(PreFlightTasks.java:71) ~[neo4j-server-2.1.4.jar:2.1.4]
at org.neo4j.server.AbstractNeoServer.runPreflightTasks(AbstractNeoServer.java:362) ~[neo4j-server-2.1.4.jar:2.1.4]
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:159) ~[neo4j-server-2.1.4.jar:2.1.4]
... 2 common frames omitted
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.StoreLockerLifecycleAdapter#7bd760a1' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343) ~[neo4j-kernel-2.1.4.jar:2.1.4]
... 8 common frames omitted
Caused by: org.neo4j.kernel.StoreLockException: Unable to obtain lock on store lock file: /var/lib/neo4j-community-2.1.4/data/graph.db/store_lock. Please ensure no other process is using this database, and that the directory is writable (required even for read-only access)
at org.neo4j.kernel.StoreLocker.checkLock(StoreLocker.java:82) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.StoreLockerLifecycleAdapter.start(StoreLockerLifecycleAdapter.java:44) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507) ~[neo4j-kernel-2.1.4.jar:2.1.4]
... 10 common frames omitted
Caused by: java.io.IOException: Unable to lock org.neo4j.kernel.impl.nioneo.store.StoreFileChannel#c8925d7
at org.neo4j.kernel.impl.nioneo.store.FileLock.wrapFileChannelLock(FileLock.java:38) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.impl.nioneo.store.FileLock.getOsSpecificFileLock(FileLock.java:93) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.DefaultFileSystemAbstraction.tryLock(DefaultFileSystemAbstraction.java:93) ~[neo4j-kernel-2.1.4.jar:2.1.4]
at org.neo4j.kernel.StoreLocker.checkLock(StoreLocker.java:74) ~[neo4j-kernel-2.1.4.jar:2.1.4]
... 12 common frames omitted
UPDATE
Acted upon the advice given in the answer but unfortunately the server still doesn't start. neo4j start command has been waiting for server to start for the last 10 minutes:
Using additional JVM arguments: -server -XX:+DisableExplicitGC
-Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled Starting Neo4j Server...WARNING: not changing user process [29578]... waiting for
server to be ready.........
The log file says:
2015-02-18 15:50:09.958+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: [/var/lib/neo4j-community-2.1.4/data/graph.db/nioneo_logical.log.1] entries found=91485 lastEntryPos=5328191
2015-02-18 15:50:09.958+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Opened logical log [/var/lib/neo4j-community-2.1.4/data/graph.db/nioneo_logical.log.1] version=8, lastTxId=513504 (recovered)
2015-02-18 15:50:09.959+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] sorting 0 xids
2015-02-18 15:50:09.997+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] checkRecoveryComplete 0 xids
2015-02-18 15:50:10.407+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.relationshiptypestore.db.names rebuild id generator, highId=35 defragged count=0
2015-02-18 15:50:10.490+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.labeltokenstore.db.names rebuild id generator, highId=17 defragged count=0
2015-02-18 15:50:10.571+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.labeltokenstore.db rebuild id generator, highId=16 defragged count=0
2015-02-18 15:50:10.653+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.propertystore.db.index.keys rebuild id generator, highId=49 defragged count=0
2015-02-18 15:50:10.776+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.propertystore.db.index rebuild id generator, highId=44 defragged count=0
2015-02-18 15:50:10.819+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.propertystore.db.strings rebuild id generator, highId=41 defragged count=0
2015-02-18 15:50:11.101+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.propertystore.db.arrays rebuild id generator, highId=7954 defragged count=0
2015-02-18 15:50:15.753+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.propertystore.db rebuild id generator, highId=212690 defragged count=0
2015-02-18 15:50:19.113+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.relationshipstore.db rebuild id generator, highId=234591 defragged count=0
2015-02-18 15:50:19.155+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.nodestore.db.labels rebuild id generator, highId=1 defragged count=0
2015-02-18 15:50:20.131+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.nodestore.db rebuild id generator, highId=46820 defragged count=0
2015-02-18 15:50:20.194+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.schemastore.db rebuild id generator, highId=5 defragged count=0
2015-02-18 15:50:20.300+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore.relationshipgroupstore.db rebuild id generator, highId=14508 defragged count=0
2015-02-18 15:50:20.423+0000 INFO [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j-community-2.1.4/data/graph.db/neostore rebuild id generator, highId=9 defragged count=0
2015-02-18 15:50:20.424+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] recovery completed.
2015-02-18 15:50:20.424+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Recovery on log [/var/lib/neo4j-community-2.1.4/data/graph.db/nioneo_logical.log.1] completed.
2015-02-18 15:50:20.628+0000 INFO [o.n.k.i.t.TxManager]: TM opening log: /var/lib/neo4j-community-2.1.4/data/graph.db/tm_tx_log.2
2015-02-18 15:50:20.992+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: Non clean shutdown detected on log [/var/lib/neo4j-community-2.1.4/data/graph.db/index/lucene.log.1]. Recovery started ...
2015-02-18 15:50:20.992+0000 INFO [o.n.k.i.t.x.XaLogicalLog]: [/var/lib/neo4j-community-2.1.4/data/graph.db/index/lucene.log.1] logVersion=2 with committed tx=199234
My server previously had around 50K nodes and 300K relationships. Is the server attempting to recover the data, and hence causing the delay in starting?
The error message
org.neo4j.kernel.StoreLockException: Unable to obtain lock on store lock file: /var/lib/neo4j-community-2.1.4/data/graph.db/store_lock. Please ensure no other process is using this database, and that the directory is writable (required even for read-only access)
is pretty much self speaking. You either don't have the file system permission to access your graph.db folder or (which I think is more probable) that there is still another Neo4j process running on the same graph.db directory. You can check for running processes using the usual suspects like jps or ps aux | grep java.
I had the same problem with message Unable to obtain a lock on store lock file (...)
What happened? When I was setting up graph.db, acting as sudo, the owner was obviously root/root. Neo4j process was not allowed to access the place.
The solution which worked for me was to change the owner of graph.db folder with:
chown -R neo4j.neo4j /path/to/graphdb/graph.db/