I am running neo4j enterprise 1.8 on grails and wanted to upgrade to 1.8.1. As I am also using the Cypher Engine extensively, after upgrade I tried to execute some queries. Unfortunately I encountered an Exception when trying to initiate the Cypher ExecutionEngine.
I've written a small Service which does the work for me:
import org.neo4j.cypher.javacompat.ExecutionEngine
import org.neo4j.kernel.impl.util.StringLogger
class CypherService {
def graphDatabaseService
static transactional = true
def executeString(String cypherString) {
log.debug "start method executeString"
ExecutionEngine executionEngine = new ExecutionEngine(graphDatabaseService, StringLogger.DEV_NULL)
if(executionEngine) {
def result = executionEngine.execute(cypherString)
return result
} else {
log.error "Could not initialize the execution engine for Cypher"
return null
}
}
}
When initiating the Execution Engine, I got the following Exception:
java.lang.NoSuchMethodError: com.googlecode.concurrentlinkedhashmap.ConcurrentLinkedHashMap$Builder.maximumWeightedCapacity(J)Lcom/googlecode/concurrentlinkedhashmap/ConcurrentLinkedHashMap$Builder;
at org.neo4j.cypher.internal.LRUCache.<init>(LRUCache.scala:31)
at org.neo4j.cypher.ExecutionEngine$$anon$1.<init>(ExecutionEngine.scala:91)
at org.neo4j.cypher.ExecutionEngine.<init>(ExecutionEngine.scala:91)
at org.neo4j.cypher.javacompat.ExecutionEngine.<init>(ExecutionEngine.java:54)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:77)
at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrapNoCoerce.callConstructor(ConstructorSite.java:102)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:52)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:190)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:202)
at com.netjay.fanorakel.CypherService.executeString(CypherService.groovy:16)
Any idea what is going wrong here, and is there a solution to avoid this?
Best
Michael
You could probably also just rebuild Neo4j's cypher module against the older version of the lib, or actually exclude the dependency from neo4j.
I had the same issue- with 1.8.1 I needed to separately include concurrentlinkedhashmap-lru.1.3.1.jar
http://code.google.com/p/concurrentlinkedhashmap/downloads/detail?name=concurrentlinkedhashmap-lru-1.3.1.jar&can=2&q=
The problem here is that:
Neo4j 1.8.1 introduced a new dependency to concurrentlinkedhashmap_lru version 1.3.1, AND
Grails has a dependency to concurrentlinkedhashmap_lru version 1.2_jdk5, AND
concurrentlinkedhashmap_lru's API is not backwards compatible for these two versions.
Therefore the grails codebase has been recently upgraded to move the dependency to 1.3.1, see https://github.com/SpringSource/grails-data-mapping/commit/b15e207a2a08ac16e77de399733cb9cc14eff48e and
https://github.com/grails/grails-core/commit/6dfab1a5db4da8c176351f23d65c7fc0d4aa6364.
So to use Neo4j 1.8.1 (and newer) with Grails you could either wait for a new Grails release or build a Grails snaptshot on your own.
Related
I've been trying to get Jung 2.1.1 to work successfully but whatever breaking changes were made are just not making sense.
After importing the 2.1.1 jars, I get the error:
The constructor VisualizationViewer(Network, LayoutAlgorithm, Dimension) is undefined
for the line:
VisualizationViewer vv = new
VisualizationViewer(g, layoutAlgorithm, new Dimension(900, 900));
where
Network g = NetworkBuilder.undirected().build(); // and other load steps
There are other imports that aren't working, like
import edu.uci.ics.jung.visualization.decorators.PickableNodePaintFunction;
import edu.uci.ics.jung.visualization.layout.LayoutAlgorithmTransition;
Edit: It appears the classes in the Jung 2.1.1 JAR still use the old definitions, for example
VisualizationViewer(Layout<V,E>,Dimension)
and not
VisualizationViewer(Network<N,E>,Dimension,Dimension)
This question was answered in https://github.com/jrtom/jung/issues/201
The short version is that you should not be cloning the HEAD version on the JUNG website; that's the 3.0 version in development, which is not yet ready for release, and is incompatible with 2.1.1. Use the 2.1.1 version explicitly for both the jars and the samples.
I deployed a Grails 3.2.0 WAR on Tomcat 8.5.6 and JDK 1.8.0_91 with a simple controller having following code:
package com.test
class MailController {
static responseFormats = ['json']
def index() {
Map headers = (request.headerNames as List).collectEntries { // It fails on this line
return [(it): request.getHeader(it)]
}
println "Incoming email $headers"
render status: 200
}
}
This code fails with the following exception:
Caused by: java.lang.NoClassDefFoundError: groovy/lang/GroovyObject
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.lang.ClassLoader.defineClass(ClassLoader.java:642)
at groovy.util.ProxyGenerator.instantiateDelegateWithBaseClass(ProxyGenerator.java:225)
at groovy.util.ProxyGenerator.instantiateDelegateWithBaseClass(ProxyGenerator.java:193)
at groovy.util.ProxyGenerator.instantiateDelegate(ProxyGenerator.java:185)
at groovy.util.ProxyGenerator.instantiateDelegate(ProxyGenerator.java:181)
at org.grails.web.converters.ConverterUtil.invokeOriginalAsTypeMethod(ConverterUtil.java:161)
at org.grails.web.converters.ConvertersExtension.asType(ConvertersExtension.groovy:56)
at com.test.MailController.index(MailController.groovy:7)
at org.grails.core.DefaultGrailsControllerClass$MethodHandleInvoker.invoke(DefaultGrailsControllerClass.java:222)
at org.grails.core.DefaultGrailsControllerClass.invoke(DefaultGrailsControllerClass.java:187)
at org.grails.web.mapping.mvc.UrlMappingsInfoHandlerAdapter.handle(UrlMappingsInfoHandlerAdapter.groovy:90)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:963)
... 14 common frames omitted
Caused by: java.lang.ClassNotFoundException: groovy.lang.GroovyObject
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
... 27 common frames omitted
Before building the WAR file, I've changed the embedded tomcat to provided in build.gradle and also commented the groovy-ant dependency related to grails-core#10196
I see a answer here but that didn't worked and the above code is working fine when we run via grails run-app.
Update
I shorted down the issue. It is failing on this part only request.headerNames as List
I am pretty sure the problem is with the use of "as List". Mostly because Grails will overwrite Groovy's asType implementation which makes the "as X" coercion syntax work.
Grails does this to add support for things like JSON for marshalling known Grails types to web transport formats.
Unfortunately, in doing so Grails also breaks any asType function you might have declared yourself. Or in this case Groovy itself already declared for converting an Enumeration into a List.
It's quite annoying as Grails is effectively breaking existing contracts here and forcing you to modify upstream code to allow it to run on Grails.
That or dump Grails because it doesn't play nice with perfectly valid Groovy code.
I believe replacing "as List" with .asType(List) won't even fix the issue as you're still invoking the same code. At best you could try .collect([]) {it} instead. It may not be necessary to add the empty array as the first argument to collect.
I am following a book example (Grails in Action 2nd edition) which is based on Grails 2.* but I am using the new Grails 3.0.1.
When I create a domain class that looks like:
package qotd
class Quote {
String content
String author
Date created = new Date()
}
I get an Exception thrown whenever I try to interact with the DB through the groovy console.
org.springframework.dao.DataAccessResourceFailureException: Could not obtain current Hibernate Session;
Caused by: org.hibernate.HibernateException: No Session found for current thread
I have tried to add #Transactional to the domain class and also swith to a lower JDK version(7) but none of them works.
I have also tested with Grails 3.0 and results are same.
If I downgrade to Grails 2.5.0 it works so it is a Grails 3.* issue. Gradle could be the issue.
I wrapped everything inside a transaction for Grails 3
qotd.Quote.withTransaction {
new qotd.Quote(author: 'Larry Wall',
content: 'There is more than one method to our madness.').save()
}
So, I recently upgraded our Grails app from version 1.3.7 to 2.3.4. I'm now getting an exception in a SOAP handler that attempts to extract the message content and log it to the DB. This worked in 1.3.7, but I'm assuming that some new dependency or something has messed with the classpath.
The code looks like this:
private String extractSOAPMessage(SOAPMessageContext smc) {
Source source = smc.getMessage().getSOAPPart().getContent()
TransformerFactory factory = TransformerFactory.newInstance()
Transformer transformer = factory.newTransformer()
transformer.setOutputProperty( OutputKeys.METHOD, "xml" )
java.io.StringWriter writer = new StringWriter()
Result result = new StreamResult( writer )
transformer.transform( source, result )
return writer.toString()
}
The exception I'm seeing is:
Caused by: java.lang.LinkageError: loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "javax/activation/DataHandler"
It happens on this line:
Source source = smc.getMessage().getSOAPPart().getContent()
It looks like the culprit is the getSOAPart() call.
Note that I am using the 1.1.1 version of the cxf plugin for Grails. Any help on this would be greatly appreciated. I've found several similar issues with solutions, but none of them have been for the "javax/activation/DataHandler", so I am not sure what's going on here.
I suspect something has a transitive dependency on the activation library which you need to exclude - try running a dependency-report. Since Java 6 that JAR has been un-necessary as it's built in to the core Java class library, but many things still have dependencies on it so they can work on Java 5 (or date back to when Java 5 was still in widespread use).
Using grails 2.3.2, Java 1.6.0_65, trying to compile the following placed in the services directory. Even if it is not a service, and just put in the src/groovy directory, it still causes the same compile error.
I installed groovy 2.1.9 (and tried 2.2.0) which appears to be the version used by grails 2.3.2 and ran groovyc -cp quava-13.0.1.jar TestCache.groovy and it worked fine. So it appears to be something related to grails.
package somewhere
import com.google.common.cache.Cache
import groovy.transform.CompileStatic
#CompileStatic
class TestCacheService {
private final Cache<URL, String> cache
TestCacheService() {
cache = null
}
}
I receive the following error:
General error during instruction selection: sun.reflect.annotation.EnumConstantNotPresentExceptionProxy
java.lang.ArrayStoreException: sun.reflect.annotation.EnumConstantNotPresentExceptionProxy
at sun.reflect.annotation.AnnotationParser.parseEnumArray(AnnotationParser.java:673)
at sun.reflect.annotation.AnnotationParser.parseArray(AnnotationParser.java:462)
at sun.reflect.annotation.AnnotationParser.parseMemberValue(AnnotationParser.java:286)
at sun.reflect.annotation.AnnotationParser.parseAnnotation(AnnotationParser.java:222)
at sun.reflect.annotation.AnnotationParser.parseAnnotations2(AnnotationParser.java:69)
at sun.reflect.annotation.AnnotationParser.parseAnnotations(AnnotationParser.java:52)
at java.lang.Class.initAnnotationsIfNecessary(Class.java:3127)
at java.lang.Class.getAnnotation(Class.java:3086)
at sun.reflect.annotation.AnnotationType.<init>(AnnotationType.java:113)
at sun.reflect.annotation.AnnotationType.getInstance(AnnotationType.java:66)
at sun.reflect.annotation.AnnotationParser.parseAnnotation(AnnotationParser.java:202)
at sun.reflect.annotation.AnnotationParser.parseAnnotations2(AnnotationParser.java:69)
at sun.reflect.annotation.AnnotationParser.parseAnnotations(AnnotationParser.java:52)
at java.lang.reflect.Method.declaredAnnotations(Method.java:693)
at java.lang.reflect.Method.getDeclaredAnnotations(Method.java:686)
at java.lang.reflect.AccessibleObject.getAnnotations(AccessibleObject.java:175)
at org.codehaus.groovy.vmplugin.v5.Java5.configureClassNode(Java5.java:362)
at org.codehaus.groovy.ast.ClassNode.lazyClassInit(ClassNode.java:258)
at org.codehaus.groovy.ast.ClassNode.getInterfaces(ClassNode.java:353)
at org.codehaus.groovy.ast.ClassNode.declaresInterface(ClassNode.java:945)
at org.codehaus.groovy.ast.ClassNode.implementsInterface(ClassNode.java:925)
at org.codehaus.groovy.transform.stc.StaticTypeCheckingVisitor.getResultType(StaticTypeCheckingVisitor.java:2629)
at org.codehaus.groovy.transform.stc.StaticTypeCheckingVisitor.visitBinaryExpression(StaticTypeCheckingVisitor.java:421)
at org.codehaus.groovy.ast.expr.BinaryExpression.visit(BinaryExpression.java:49)
at org.codehaus.groovy.ast.CodeVisitorSupport.visitExpressionStatement(CodeVisitorSupport.java:69)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitExpressionStatement(ClassCodeVisitorSupport.java:193)
at org.codehaus.groovy.ast.stmt.ExpressionStatement.visit(ExpressionStatement.java:40)
at org.codehaus.groovy.ast.CodeVisitorSupport.visitBlockStatement(CodeVisitorSupport.java:35)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitBlockStatement(ClassCodeVisitorSupport.java:163)
at org.codehaus.groovy.ast.stmt.BlockStatement.visit(BlockStatement.java:69)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitClassCodeContainer(ClassCodeVisitorSupport.java:101)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitConstructorOrMethod(ClassCodeVisitorSupport.java:112)
at org.codehaus.groovy.transform.stc.StaticTypeCheckingVisitor.visitConstructorOrMethod(StaticTypeCheckingVisitor.java:1435)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitConstructor(ClassCodeVisitorSupport.java:119)
at org.codehaus.groovy.ast.ClassNode.visitContents(ClassNode.java:1051)
at org.codehaus.groovy.ast.ClassCodeVisitorSupport.visitClass(ClassCodeVisitorSupport.java:50)
at org.codehaus.groovy.transform.stc.StaticTypeCheckingVisitor.visitClass(StaticTypeCheckingVisitor.java:162)
at org.codehaus.groovy.transform.sc.StaticCompilationVisitor.visitClass(StaticCompilationVisitor.java:110)
at org.codehaus.groovy.transform.sc.StaticCompileTransformation.visit(StaticCompileTransformation.java:60)
at org.codehaus.groovy.transform.ASTTransformationVisitor.visitClass(ASTTransformationVisitor.java:132)
at org.codehaus.groovy.transform.ASTTransformationVisitor$2.call(ASTTransformationVisitor.java:176)
at org.codehaus.groovy.control.CompilationUnit.applyToPrimaryClassNodes(CompilationUnit.java:1036)
at org.codehaus.groovy.control.CompilationUnit.doPhaseOperation(CompilationUnit.java:572)
at org.codehaus.groovy.control.CompilationUnit.processPhaseOperations(CompilationUnit.java:550)
at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:527)
at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:506)
at org.codehaus.groovy.tools.FileSystemCompiler.compile(FileSystemCompiler.java:59)
at org.codehaus.groovy.tools.FileSystemCompiler.doCompilation(FileSystemCompiler.java:215)
at org.codehaus.groovy.ant.Groovyc.runCompiler(Groovyc.java:1104)
at org.codehaus.groovy.ant.Groovyc.compile(Groovyc.java:1155)
at org.codehaus.groovy.grails.compiler.Grailsc.compile(Grailsc.java:78)
at org.codehaus.groovy.ant.Groovyc.execute(Groovyc.java:770)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
Is this a known bug?
Any workaround?
Google's Cache class uses the Nullable annotation. I had multiple nullable annotation implementations on my classpath. I think removing 'edu.washington.cs.types.checker:checker-framework:1.6.4' from the classpath solved this problem.