training a decision tree - machine-learning

I am trying to get started with Machine Learning. I have some training data representing pixel values of digits in images and I am trying to train a decision tree out of this. What would be a good way of getting started? What tools should I consider (pointers on related documentation would help)? I also want to train a random forest on the data to compare performance versus decision tree. Any guidance would be of great help.

The best way to get started is probably Weka. Apart from offering implementations of a random forest classifier as well as several decision trees (among lots of other algorithms), it also provides tools for processing and visualizing the data. It comes with a relatively easy to use GUI.

The random forest uses trees, so I'd probably counsel you to get the trees working first. Once you know all about trees, you can read about forests and it will be very straightforward. However, you should start by trying to learn about machine learning rather than just jumping into a library. I would start by understanding how to use decision trees on Boolean features (much simpler) using the method of maximizing entropy. Once you understand that algorithm well enough to run it by hand on a small dataset, read up on how to use decision-trees on real valued features. Then check out the library.

Related

Simple machine learning for website classification

I am trying to generate a Python program that determines if a website is harmful (porn etc.).
First, I made a Python web scraping program that counts the number of occurrences for each word.
result for harmful websites
It's a key value dictionary like
{ word : [ # occurrences in harmful websites, # of websites that contain these words] }.
Now I want my program to analyze the words from any websites to check if the website is safe or not. But I don't know which methods will suit to my data.
The key thing here is your training data. You need some sort of supervised learning technique where your training data consists of website's data itself (text document) and its label (harmful or safe).
You can certainly use the RNN but there also other natural language processing techniques and much faster ones.
Typically, you should use a proper vectorizer on your training data (think of each site page as a text document), for example tf-idf (but also other possibilities; if you use Python I would strongly suggest scikit that provides lots of useful machine learning techniques and mentioned sklearn.TfidfVectorizer is already within). The point is to vectorize your text document in enhanced way. Imagine for example the English word the how many times it typically exists in text? You need to think of biases such as these.
Once your training data is vectorized you can use for example stochastic gradient descent classifier and see how it performs on your test data (in machine learning terminology the test data means to simply take some new data example and test what your ML program outputs).
In either case you will need to experiment with above options. There are many nuances and you need to test your data and see where you achieve the best results (depending on ML algorithm settings, type of vectorizer, used ML technique itself and so on). For example Support Vector Machines are great choice when it comes to binary classifiers too. You may wanna play with that too and see if it performs better than SGD.
In any case, remember that you will need to obtain quality training data with labels (harmful vs. safe) and find the best fitting classifier. On your journey to find the best one you may also wanna use cross validation to determine how well your classifier behaves. Again, already contained in scikit-learn.
N.B. Don't forget about valid cases. For example there may be a completely safe online magazine where it only mentions the harmful topic in some article; it doesn't mean the website itself is harmful though.
Edit: As I think of it, if you don't have any experience with ML at all it could be useful to take any online course because despite the knowledge of API and libraries you will still need to know what it does and the math behind the curtain (at least roughly).
What you are trying to do is called sentiment classification and is usually done with recurrent neural networks (RNNs) or Long short-term memory networks (LSTMs). This is not an easy topic to start with machine learning. If you are new you should have a look into linear/logistic regression, SVMs and basic neural networks (MLPs) first. Otherwise it will be hard to understand what is going on.
That said: there are many libraries out there for constructing neural networks. Probably easiest to use is keras. While this library simplifies a lot of things immensely, it isn't just a magic box that makes gold from trash. You need to understand what happens under the hood to get good results. Here is an example of how you can perform sentiment classification on the IMDB dataset (basically determine whether a movie review is positive or not) with keras.
For people who have no experience in NLP or ML, I recommend using TFIDF vectorizer instead of using deep learning libraries. In short, it converts sentences to vector, taking each word in vocabulary to one dimension (degree is occurrence).
Then, you can calculate cosine similarity to resulting vector.
To improve performance, use stemming / lemmatizing / stopwords supported in NLTK libraires.

How to approach a machine learning programming competition

Many machine learning competitions are held in Kaggle where a training set and a set of features and a test set is given whose output label is to be decided based by utilizing a training set.
It is pretty clear that here supervised learning algorithms like decision tree, SVM etc. are applicable. My question is, how should I start to approach such problems, I mean whether to start with decision tree or SVM or some other algorithm or is there is any other approach i.e. how will I decide?
So, I had never heard of Kaggle until reading your post--thank you so much, it looks awesome. Upon exploring their site, I found a portion that will guide you well. On the competitions page (click all competitions), you see Digit Recognizer and Facial Keypoints Detection, both of which are competitions, but are there for educational purposes, tutorials are provided (tutorial isn't available for the facial keypoints detection yet, as the competition is in its infancy. In addition to the general forums, competitions have forums also, which I imagine is very helpful.
If you're interesting in the mathematical foundations of machine learning, and are relatively new to it, may I suggest Bayesian Reasoning and Machine Learning. It's no cakewalk, but it's much friendlier than its counterparts, without a loss of rigor.
EDIT:
I found the tutorials page on Kaggle, which seems to be a summary of all of their tutorials. Additionally, scikit-learn, a python library, offers a ton of descriptions/explanations of machine learning algorithms.
This cheatsheet http://peekaboo-vision.blogspot.pt/2013/01/machine-learning-cheat-sheet-for-scikit.html is a good starting point. In my experience using several algorithms at the same time can often give better results, eg logistic regression and svm where the results of each one have a predefined weight. And test, test, test ;)
There is No Free Lunch in data mining. You won't know which methods work best until you try lots of them.
That being said, there is also a trade-off between understandability and accuracy in data mining. Decision Trees and KNN tend to be understandable, but less accurate than SVM or Random Forests. Kaggle looks for high accuracy over understandability.
It also depends on the number of attributes. Some learners can handle many attributes, like SVM, whereas others are slow with many attributes, like neural nets.
You can shrink the number of attributes by using PCA, which has helped in several Kaggle competitions.

Advantages of SVM over decion trees and AdaBoost algorithm

I am working on binary classification of data and I want to know the advantages and disadvantages of using Support vector machine over decision trees and Adaptive Boosting algorithms.
Something you might want to do is use weka, which is a nice package that you can use to plug in your data and then try out a bunch of different machine learning classifiers to see how each works on your particular set. It's a well-tread path for people who do machine learning.
Knowing nothing about your particular data, or the classification problem you are trying to solve, I can't really go beyond just telling you random things I know about each method. That said, here's a brain dump and links to some useful machine learning slides.
Adaptive Boosting uses a committee of weak base classifiers to vote on the class assignment of a sample point. The base classifiers can be decision stumps, decision trees, SVMs, etc.. It takes an iterative approach. On each iteration - if the committee is in agreement and correct about the class assignment for a particular sample, then it becomes down weighted (less important to get right on the next iteration), and if the committee is not in agreement, then it becomes up weighted (more important to classify right on the next iteration). Adaboost is known for having good generalization (not overfitting).
SVMs are a useful first-try. Additionally, you can use different kernels with SVMs and get not just linear decision boundaries but more funkily-shaped ones. And if you put L1-regularization on it (slack variables) then you can not only prevent overfitting, but also, you can classify data that isn't separable.
Decision trees are useful because of their interpretability by just about anyone. They are easy to use. Using trees also means that you can also get some idea of how important a particular feature was for making that tree. Something you might want to check out is additive trees (like MART).

How to categorize continuous data?

I have two dependent continuous variables and i want to use their combined values to predict the value of a third binary variable. How do i go about discretizing/categorizing the values? I am not looking for clustering algorithms, i'm specifically interested in obtaining 'meaningful' discrete categories i can subsequently use in in a Bayesian classifier.
Pointers to papers, books, online courses, all very much appreciated!
That is the essence of machine learning and problem one of the most studied problem.
Least-square regression, logistic regression, SVM, random forest are widely used for this type of problem, which is called binary classification.
If your goal is to pragmatically classify your data, several libraries are available, like Scikits-learn in python and weka in java. They have a great documentation.
But if you want to understand what's the intrinsics of machine learning, just search (here or on google) for machine learning resources.
If you wanted to be a real nerd, generate a bunch of different possible discretizations and then train a classifier on it, and then characterize the discretizations by features and then run a classifier on that, and see what sort of discretizations are best!?
In general discretizing stuff is more of an art and having a good understanding of what the input variable ranges mean.

What is machine learning? [closed]

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What is machine learning ?
What does machine learning code do ?
When we say that the machine learns, does it modify the code of itself or it modifies history (database) which will contain the experience of code for given set of inputs?
What is a machine learning ?
Essentially, it is a method of teaching computers to make and improve predictions or behaviors based on some data. What is this "data"? Well, that depends entirely on the problem. It could be readings from a robot's sensors as it learns to walk, or the correct output of a program for certain input.
Another way to think about machine learning is that it is "pattern recognition" - the act of teaching a program to react to or recognize patterns.
What does machine learning code do ?
Depends on the type of machine learning you're talking about. Machine learning is a huge field, with hundreds of different algorithms for solving myriad different problems - see Wikipedia for more information; specifically, look under Algorithm Types.
When we say machine learns, does it modify the code of itself or it modifies history (Data Base) which will contain the experience of code for given set of inputs ?
Once again, it depends.
One example of code actually being modified is Genetic Programming, where you essentially evolve a program to complete a task (of course, the program doesn't modify itself - but it does modify another computer program).
Neural networks, on the other hand, modify their parameters automatically in response to prepared stimuli and expected response. This allows them to produce many behaviors (theoretically, they can produce any behavior because they can approximate any function to an arbitrary precision, given enough time).
I should note that your use of the term "database" implies that machine learning algorithms work by "remembering" information, events, or experiences. This is not necessarily (or even often!) the case.
Neural networks, which I already mentioned, only keep the current "state" of the approximation, which is updated as learning occurs. Rather than remembering what happened and how to react to it, neural networks build a sort of "model" of their "world." The model tells them how to react to certain inputs, even if the inputs are something that it has never seen before.
This last ability - the ability to react to inputs that have never been seen before - is one of the core tenets of many machine learning algorithms. Imagine trying to teach a computer driver to navigate highways in traffic. Using your "database" metaphor, you would have to teach the computer exactly what to do in millions of possible situations. An effective machine learning algorithm would (hopefully!) be able to learn similarities between different states and react to them similarly.
The similarities between states can be anything - even things we might think of as "mundane" can really trip up a computer! For example, let's say that the computer driver learned that when a car in front of it slowed down, it had to slow down to. For a human, replacing the car with a motorcycle doesn't change anything - we recognize that the motorcycle is also a vehicle. For a machine learning algorithm, this can actually be surprisingly difficult! A database would have to store information separately about the case where a car is in front and where a motorcycle is in front. A machine learning algorithm, on the other hand, would "learn" from the car example and be able to generalize to the motorcycle example automatically.
Machine learning is a field of computer science, probability theory, and optimization theory which allows complex tasks to be solved for which a logical/procedural approach would not be possible or feasible.
There are several different categories of machine learning, including (but not limited to):
Supervised learning
Reinforcement learning
Supervised Learning
In supervised learning, you have some really complex function (mapping) from inputs to outputs, you have lots of examples of input/output pairs, but you don't know what that complicated function is. A supervised learning algorithm makes it possible, given a large data set of input/output pairs, to predict the output value for some new input value that you may not have seen before. The basic method is that you break the data set down into a training set and a test set. You have some model with an associated error function which you try to minimize over the training set, and then you make sure that your solution works on the test set. Once you have repeated this with different machine learning algorithms and/or parameters until the model performs reasonably well on the test set, then you can attempt to use the result on new inputs. Note that in this case, the program does not change, only the model (data) is changed. Although one could, theoretically, output a different program, but that is not done in practice, as far as I am aware. An example of supervised learning would be the digit recognition system used by the post office, where it maps the pixels to labels in the set 0...9, using a large set of pictures of digits that were labeled by hand as being in 0...9.
Reinforcement Learning
In reinforcement learning, the program is responsible for making decisions, and it periodically receives some sort of award/utility for its actions. However, unlike in the supervised learning case, the results are not immediate; the algorithm could prescribe a large sequence of actions and only receive feedback at the very end. In reinforcement learning, the goal is to build up a good model such that the algorithm will generate the sequence of decisions that lead to the highest long term utility/reward. A good example of reinforcement learning is teaching a robot how to navigate by giving a negative penalty whenever its bump sensor detects that it has bumped into an object. If coded correctly, it is possible for the robot to eventually correlate its range finder sensor data with its bumper sensor data and the directions that sends to the wheels, and ultimately choose a form of navigation that results in it not bumping into objects.
More Info
If you are interested in learning more, I strongly recommend that you read Pattern Recognition and Machine Learning by Christopher M. Bishop or take a machine learning course. You may also be interested in reading, for free, the lecture notes from CIS 520: Machine Learning at Penn.
Machine learning is a scientific discipline that is concerned with the design and development of algorithms that allow computers to evolve behaviors based on empirical data, such as from sensor data or databases. Read more on Wikipedia
Machine learning code records "facts" or approximations in some sort of storage, and with the algorithms calculates different probabilities.
The code itself will not be modified when a machine learns, only the database of what "it knows".
Machine learning is a methodology to create a model based on sample data and use the model to make a prediction or strategy. It belongs to artificial intelligence.
Machine learning is simply a generic term to define a variety of learning algorithms that produce a quasi learning from examples (unlabeled/labeled). The actual accuracy/error is entirely determined by the quality of training/test data you provide to your learning algorithm. This can be measured using a convergence rate. The reason you provide examples is because you want the learning algorithm of your choice to be able to informatively by guidance make generalization. The algorithms can be classed into two main areas supervised learning(classification) and unsupervised learning(clustering) techniques. It is extremely important that you make an informed decision on how you plan on separating your training and test data sets as well as the quality that you provide to your learning algorithm. When you providing data sets you want to also be aware of things like over fitting and maintaining a sense of healthy bias in your examples. The algorithm then basically learns wrote to wrote on the basis of generalization it achieves from the data you have provided to it both for training and then for testing in process you try to get your learning algorithm to produce new examples on basis of your targeted training. In clustering there is very little informative guidance the algorithm basically tries to produce through measures of patterns between data to build related sets of clusters e.g kmeans/knearest neighbor.
some good books:
Introduction to ML (Nilsson/Stanford),
Gaussian Process for ML,
Introduction to ML (Alpaydin),
Information Theory Inference and Learning Algorithms (very useful book),
Machine Learning (Mitchell),
Pattern Recognition and Machine Learning (standard ML course book at Edinburgh and various Unis but relatively a heavy reading with math),
Data Mining and Practical Machine Learning with Weka (work through the theory using weka and practice in Java)
Reinforcement Learning there is a free book online you can read:
http://www.cs.ualberta.ca/~sutton/book/ebook/the-book.html
IR, IE, Recommenders, and Text/Data/Web Mining in general use alot of Machine Learning principles. You can even apply Metaheuristic/Global Optimization Techniques here to further automate your learning processes. e.g apply an evolutionary technique like GA (genetic algorithm) to optimize your neural network based approach (which may use some learning algorithm). You can approach it purely in form of a probablistic machine learning approach for example bayesian learning. Most of these algorithms all have a very heavy use of statistics. Concepts of convergence and generalization are important to many of these learning algorithms.
Machine learning is the study in computing science of making algorithms that are able to classify information they haven't seen before, by learning patterns from training on similar information. There are all sorts of kinds of "learners" in this sense. Neural networks, Bayesian networks, decision trees, k-clustering algorithms, hidden markov models and support vector machines are examples.
Based on the learner, they each learn in different ways. Some learners produce human-understandable frameworks (e.g. decision trees), and some are generally inscrutable (e.g. neural networks).
Learners are all essentially data-driven, meaning they save their state as data to be reused later. They aren't self-modifying as such, at least in general.
I think one of the coolest definitions of machine learning that I've read is from this book by Tom Mitchell. Easy to remember and intuitive.
A computer program is said to learn from experience E with respect to some class of tasks T and performance measure P, if its performance at tasks in T, as measured by P, improves with experience E
Shamelessly ripped from Wikipedia: Machine learning is a scientific discipline that is concerned with the design and development of algorithms that allow computers to evolve behaviors based on empirical data, such as from sensor data or databases.
Quite simply, machine learning code accomplishes a machine learning task. That can be a number of things from interpreting sensor data to a genetic algorithm.
I would say it depends. No, modifying code is not normal, but is not outside the realm of possibility. I would also not say that machine learning always modifies a history. Sometimes we have no history to build off of. Sometime we simply want to react to the environment, but not actually learn from our past experiences.
Basically, machine learning is a very wide-open discipline that contains many methods and algorithms that make it impossible for there to be 1 answer to your 3rd question.
Machine learning is a term that is taken from the real world of a person, and applied on something that can't actually learn - a machine.
To add to the other answers - machine learning will not (usually) change the code, but it might change it's execution path and decision based on previous data or new gathered data and hence the "learning" effect.
there are many ways to "teach" a machine - you give weights to many parameter of an algorithm, and then have the machine solve it for many cases, each time you give her a feedback about the answer and the machine adjusts the weights according to how close the machine answer was to your answer or according to the score you gave it's answer, or according to some results test algorithm.
This is one way of learning and there are many more...

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