I have an environment file named .env337_dev. I need to run this file to set the environment before running another command. How to run this file?
Inside the file, it contains several variables like this
export AB_HOME=/et/dev/abinitio/sit1/abinitio-V2 #/gcc3p32 # for 32-bit
export PATH=${AB_HOME}/bin:${PATH}
Apart from . ./.env337_devcommand which will run and set the environment, is there any other way to run this file ?
Are you looking for the user-specific .bashrc (bash is the default shell on RHEL 6) or a system-wide /etc/profile.d/<something>.sh? For the first, you would edit $HOME/.bashrc and append a line like . .env337_dev (it's still run before any "regular" command, because .bashrc is the Bash standard personal initialization file). Second option suggests that you use an absolute path.
If this doesn't answer your question, a more specific question and/or more details would be very helpful.
You tagged this ab-initio, so you should only be setting a very few environment variables, including:
export AB_HOME=<path-to-co>operating-system>
export PATH=$AB_HOME/bin:$PATH
If you are working with Ab Initio web applications:
export AB_APPLICATION_HUB=<path-to-application-hub>
export JAVA_HOME=<path-to-jdk>
export PATH=$JAVA_HOME/bin:$PATH
and specific settings for different applications, e.g.
export AB_MHUB_HOME=<path-to-metadata-hub-installation>
Typically you put those into the file .profile in your home directory, which shells evaluate for interactive sessions.
I am writing Ansible playbooks to setup and install our applications on Solaris servers.
The problem is that the (bash) scripts which I need to execute all assume that a certain directory lies on the PATH, namely /data/bin - which would normally not be a problem were it not for Ansible ignoring all the .profile and .bashrc config.
Now, I know that you can specify the environment for shell tasks via the environment flag, for example like this:
- shell: printenv
environment:
PATH: /usr/bin:/usr/sbin:/data/bin
This will properly path the /data/bin folder, and the printenv command will correctly display (or my bash scripts would correctly run).
But. There are two problems however:
First of all it is very annoying to have to specify the environment over and over again. I know that you can define the environment in some playbook base file variable and the reference that, but you still have to set environment: ... on every single shell task.
Secondly, the above example does not allow me to specify the path dynamically, e.g. as PATH: $PATH:/data/bin - because Ansible executes this in a way which does not resolve $PATH, thus the command fails catastrophically. So essentially this will override any other changes to PATH.
I am looking for a solution where
the additional PATH entry should only be added once
the additional PATH entry should not override entries added by other tasks
P.S. I found this nice explanation on how to do this on Linux, but it makes use of /etc/environment which does not exist on Solaris. (And /etc/profile is once again ignored by Ansible.)
try adding -o SendEnv=PATH to ssh_args in ansible.cfg. Requires that
the shell in which you run ansible has /data/bin in PATH. Or however ansible allows you to modify the current/local PATH variable.
remote machine has AcceptEnv set correctly.
I have set up a cron job to run once an hour a script cron/cron.php
This script simply reads a table to check which scripts should run at a given time.
So far no problem.
I just noticed that $_SERVER['DOCUMENT_ROOT'] and $_SERVER['SERVER_NAME'] is empty. Same to $_ENV['HOSTNAME']
What can be the reason? I would prefer to have my cron.php portable so I am searching for a solution which should work on every server.
Thanks in advance for any tips!
When the cron script is run, it's most likely executed by the php-cli binary and not the webserver.
$_SERVER entries are set by the webserver, here is the quote from $_SERVER page in the PHP manual:
$_SERVER is an array containing information such as headers, paths, and script locations. The entries in this array are created by the web server.
As there is no webserver involved with your cron script, these are not set. You can try this your own by executing php on the command-line:
php -r 'var_dump($_SERVER);'
it will output all settings in $_SERVER in your command-line environment, "DOCUMENT_ROOT" most likely will be an empty string and "SERVER_NAME" is not set at all.
The $_ENV superglobal contains the environment variables of the system specifically, it's just that "HOSTNAME" is not set as environment variable by the cron binary.
Further Considerations
I normally suggest to not only create the PHP cron script (as you did with cron/cron.php) but also to create a shell-script that invokes the php script. Then use the shell-script in the crontab. This allows you to modify the environment easily without re-configuring the crontab or the cron.php too often. You can then set environment variables within that shell script as well as changing the working directory etc.
If you want to make your cron.php script more portable, figure out what the injected environment dependencies are (e.g. the document root your have) and make those variable, e.g. with variables or a parameter object. Then create a section in your script where those variables are populated and the rest of your script can run based on them in an injected manner. This reduces configuration changes only to a very limited part of your script and will allow you to create more re-useable code.
I am running Jenkins from user jenkins thats has $PATH set to something and when I go into Jenkins web interface, in the System Properties window (http://$host/systemInfo) I see a different $PATH.
I have installed Jenkins on Centos with the native rpm from Jenkins website. I am using the startup script provided with the installation using sudo /etc/init.d/jenkins start
Can anyone please explain to me why that happens?
Michael,
Two things:
When Jenkins connects to a computer, it goes to the sh shell, and not the bash shell (at least this is what I have noticed - I may be wrong). So any changes you make to $PATH in your bashrc file are not considered.
Also, any changes you make to $PATH in your local shell (one that you personally ssh into) will not show up in Jenkins.
To change the path that Jenkins uses, you have two options (AFAIK):
1) Edit your /etc/profile file and add the paths that you want there
2) Go to the configuration page of your slave, and add environment variable PATH, with value: $PATH:/followed-by/paths/you/want/to/add
If you use the second option, your System Information will still not show it, but your builds will see the added paths.
I kept running into this problem, but now I just add:
source /etc/profile
As the first step in my build process. Now all my subsequent rules are loaded for Jenkins to operate smoothly.
You can also edit the /etc/sysconfig/jenkins file to make any changes to the environment variables, etc. I simply added source /etc/profile to the end of the file. /etc/profile has all all of the proper PATH variables setup. When you do this, make sure you restart Jenkins
/etc/init.d/jenkins restart
We are running ZendServer CE which installs pear, phing, etc in a different path so this was helpful. Also, we don't get the LD_LIBRARY_PATH errors we used to get with Oracle client and Jenkins.
I tried /etc/profile, ~/.profile and ~/.bash_profile and none of those worked. I found that editing ~/.bashrc for the jenkins slave account did.
The information on this answer is out of date. You need to go to Configure Jenkins > And you can then click to add an Environment Variable key-value pair from there.
eg: export MYVAR=test would be MYVAR is the key, and test is the value.
I found two plugins for that.
One loads the values from a file and the other lets you configure the values in the job configuration screen.
Envfile Plugin — This plugin enables you to set environment variables via a file. The file's format must be the standard Java property file format.
EnvInject Plugin — This plugin makes it possible to add environment variables and execute a setup script in order to set up an environment for the Job.
On my newer EC2 instance, simply adding the new value to the Jenkins user's .profile's PATH and then restarting tomcat worked for me.
On an older instance where the config is different, using #2 from Sagar's answer was the only thing that worked (i.e. .profile, .bash* didn't work).
Couldn't you just add it as an environment variable in Jenkins settings:
Manage Jenkins -> Global properties > Environment variables:
And then click "Add" to add a property PATH and its value to what you need.
This is how I solved this annoying issue:
I changed the PATH variable as #sagar suggested in his 2nd option, but still I got different PATH value than I expected.
Eventually I found out that it was the EnvInject plugin that replaced my PATH variable!
So I could either uninstall EnvInject or just use it to inject the PATH variable.
As many of our Jenkins jobs use that plugin, I didn't want to uninstall it...
So I created a file: environment_variables.properties under my Jenkins home directory.
This file contained the path environment value that I needed:
PATH=$PATH:/usr/local/git/bin/.
From the Jenkins web interface: Manage Jenkins -> Configure System.
In that screen - I ticked the Prepare jobs environment option, and in the Properties File Path field I entered the path to my file: /var/lib/jenkins/environment_variables.properties.
This way every Jenkins job we have receive whatever variables I put in this environment_variables.properties file.
Jenkins also supports the format PATH+<name> to prepend to any variable, not only PATH:
Global Environment variables or node Environment variables:
This is also supported in the pipeline step withEnv:
node {
withEnv(['PATH+JAVA=/path/to/java/bin']) {
...
}
}
Just take note, it prepends to the variable. If it must be appended you need to do what the other answers show.
See the pipeline steps document here.
You may also use the syntax PATH+WHATEVER=/something to prepend /something to $PATH
Or the java docs on EnvVars here.
I only had progress on this issue after a "/etc/init.d/jenkins force-reload". I recommend trying that before anything else, and using that rather than restart.
On my Ubuntu 13.04, I tried quite a few tweaks before succeeding with this:
Edit /etc/init/jenkins.conf
Locate the spot where "exec start-stop-server..." begins
Insert the environment update just before that, i.e.
export PATH=$PATH:/some/new/path/bin
Add
/usr/bin/bash
at
Jenkins -> Manage Jenkins -> configure System -> Shell->Shell
executable
Jenkins use the sh so that even /etc/profile doesn't work for me
When I add this, I have all the env.
Solution that worked for me
source ~/.bashrc
Explanation
I first verified Jenkins was running BASH, with echo $SHELL and echo $BASH (note I'm explicitly putting #!/bin/bash atop the textarea in Jenkins, I'm not sure if that's a requirement to get BASH). sourceing /etc/profile as others suggested was not working.
Looking at /etc/profile I found
if [ "$PS1" ]; then
...
and inspecting "$PS1" found it null. I tried spoofing $PS1 to no avail like so
export PS1=1
bash -c 'echo $PATH'
however this did not produce the desired result (add the rest of the $PATH I expect to see). But if I tell bash to be interactive
export PS1=1
bash -ci 'echo $PATH'
the $PATH was altered as I expected.
I was trying to figure out how to properly spoof an interactive shell to get /etc/bash.bashrc to load, however it turns out all I needed was down in ~/.bashrc, so simply sourceing it solved the problem.
I tried all the things from above - didn't work for me.
I found two solution (both for SSH-Slave)
Go to the slave settings
Add a new environment variable
PATH
${PATH}:${HOME}/.pub-cache/bin:${HOME}/.local/bin
The "${HOME}" part is important. This makes the additional PATH absolute.
Relative path did not work for me.
Option II (pipeline-script)
pipeline {
agent {
label 'your-slave'
}
environment {
PATH = "/home/jenkins/.pub-cache/bin:$PATH"
}
stages {
stage('Test') {
steps {
ansiColor('xterm') {
echo "PATH is: $PATH"
}
}
}
}
}
On Ubuntu I just edit /etc/default/jenkins and add source /etc/profile at the end and it works to me.
Running the command with environment variable set is also effective. Of course, you have to do it for each command you run, but you probably have a job script, so you probably only have one command per build. My job script is a python script that uses the environment to decide which python to use, so I still needed to put /usr/local/bin/python2.7 in its path:
PATH=/usr/local/bin <my-command>
What worked for me was overriding the PATH environment for the slave.
Set: PATH
To: $PATH:/usr/local/bin
Then disconnecting and reconnecting the slave.
Despite what the system information was showing it worked.
I have Jenkins 1.639 installed on SLES 11 SP3 via zypper (the package manager).
Installation configured jenkins as a service
# service jenkins
Usage: /etc/init.d/jenkins {start|stop|status|try-restart|restart|force-reload|reload|probe}
Although /etc/init.d/jenkins sources /etc/sysconfig/jenkins, any env variables set there are not inherited by the jenkins process because it is started in a separate login shell with a new environment like this:
startproc -n 0 -s -e -l /var/log/jenkins.rc -p /var/run/jenkins.pid -t 1 /bin/su -l -s /bin/bash -c '/usr/java/default/bin/java -Djava.awt.headless=true -DJENKINS_HOME=/var/lib/jenkins -jar /usr/lib/jenkins/jenkins.war --javaHome=/usr/java/default --logfile=/var/log/jenkins/jenkins.log --webroot=/var/cache/jenkins/war --httpPort=8080 --ajp13Port=8009 --debug=9 --handlerCountMax=100 --handlerCountMaxIdle=20 &' jenkins
The way I managed to set env vars for the jenkins process is via .bashrc in its home directory - /var/lib/jenkins. I had to create /var/lib/jenkins/.bashrc as it did not exist before.
1- add to your profil file".bash_profile" file
it is in "/home/your_user/" folder
vi .bash_profile
add:
export JENKINS_HOME=/apps/data/jenkins
export PATH=$PATH:$JENKINS_HOME
==> it's the e jenkins workspace
2- If you use jetty :
go to jenkins.xml file
and add :
<Arg>/apps/data/jenkins</Arg>
Here is what i did on ubuntu 18.04 LTS with Jenkins 2.176.2
I created .bash_aliases file and added there path, proxy variables and so on.
In beginning of .bashrc there was this defined.
# If not running interactively, don't do anything
case $- in
*i*) ;;
*) return;;
esac
So it's checking that if we are start non-interactive shell then we don't do nothing here.
bottom of the .bashrc there was include for .bash_aliases
# Alias definitions.
# You may want to put all your additions into a separate file like
# ~/.bash_aliases, instead of adding them here directly.
# See /usr/share/doc/bash-doc/examples in the bash-doc package.
if [ -f ~/.bash_aliases ]; then
. ~/.bash_aliases
fi
so i moved .bash_aliases loading first at .bashrc just above non-interactive check.
This didn't work first but then i disconnected slave and re-connected it so it's loading variables again. You don't need to restart whole jenkins if you are modifying slave variables. just disconnect and re-connect.
If your pipeline is executed on the remote node that is connected via SSH, then actually Jenkins runs agent application that performs incoming actions.
By default zsh shell is used, not the bash (my Jenkins has version 2.346.3).
Furthermore jenkins-agent runs non-login shell which makes default PATH values even if you put some configuration to .zshrc. It will be skipped.
My choice is to put the following shebang at a script start
#!/bin/bash -l
-l option makes bash to run in the login mode and in this case bash performs configurations specified in /etc/profile and ~/.bash_profile.
If you run script in Jenkins pipeline it will look like:
steps {
sh '''#!/bin/bash -l
env
'''
}
This would be part of a reverse-engineering project.
To determine and document what a shell script (ksh, bash, sh) does, it is comfortable, if you have information about what other programs/scripts it calls.
How could one automate this task? Do you know any program or framework that can parse a shell script? This way for instance, I could recognize external command calls -- a step to the right direction.
For bash/sh/ksh, I think you can easily modify their source to log what has been executed. That would be a solution.
How about:
Get a list of distinct words in that script
Search $PATH to find a hit for each
?
bash -v script.sh ?
Bash's xtrace is your friend.
You can invoke it with:
set -x at the top of your script,
by calling your script with bash -x (or even bash --debugger -x),
or recursively by doing (set -x; export SHELLOPTS; your-script; )
If you can't actually run the script, try loading it into a text editor that supports syntax highlighting for Bash. It will color-code all of the text and should help indicate what is a reserved word, variable, external command, etc.