Grails application won't run - grails

After installing export plugin i can not run grails application and get this
java.lang.LinkageError: loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "org/xml/sax/SAXParseException"
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2427)
at java.lang.Class.getDeclaredMethods(Class.java:1791)
at java.security.AccessController.doPrivileged(Native Method)
at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46)
at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33)
at grails.util.PluginBuildSettings.getPluginInfos(PluginBuildSettings.groovy:123)
at grails.util.PluginBuildSettings.getPluginInfos(PluginBuildSettings.groovy)
at grails.util.PluginBuildSettings$getPluginInfos.callCurrent(Unknown Source)
at grails.util.PluginBuildSettings.getPluginInfo(PluginBuildSettings.groovy:167)
at grails.util.PluginBuildSettings$getPluginInfo.callCurrent(Unknown Source)
at grails.util.PluginBuildSettings.getPluginInfoForSource(PluginBuildSettings.groovy:208)
at org.codehaus.groovy.transform.ASTTransformationVisitor$3.call(ASTTransformationVisitor.java:302)
at org.codehaus.groovy.control.CompilationUnit.applyToSourceUnits(CompilationUnit.java:824)
at org.codehaus.groovy.control.CompilationUnit.doPhaseOperation(CompilationUnit.java:521)
at org.codehaus.groovy.control.CompilationUnit.processPhaseOperations(CompilationUnit.java:497)
at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:474)
at _GrailsEvents_groovy.run(_GrailsEvents_groovy:54)
at _GrailsEvents_groovy$run.call(Unknown Source)
at _GrailsClean_groovy$run.call(Unknown Source)
at _GrailsClean_groovy.run(_GrailsClean_groovy:29)
at _GrailsClean_groovy$run.call(Unknown Source)
at _GrailsPlugins_groovy$run.call(Unknown Source)
at _GrailsPlugins_groovy.run(_GrailsPlugins_groovy:32)
at _GrailsPlugins_groovy$run.call(Unknown Source)
at _GrailsRun_groovy$run.call(Unknown Source)
at _GrailsRun_groovy.run(_GrailsRun_groovy:31)
at _GrailsRun_groovy$run.call(Unknown Source)
at RunApp.run(RunApp.groovy:25)
at RunApp$run.call(Unknown Source)
at gant.Gant.prepareTargets(Gant.groovy:606)
Error loading event script from file [/home/natalia/.grails/1.3.7/projects/MEM1.1/plugins/tomcat-1.3.7/scripts/_Events.groovy] loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "org/xml/sax/SAXParseException"
Error executing script RunApp: loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "org/xml/sax/SAXParseException"
java.lang.LinkageError: loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "org/xml/sax/SAXParseException"
at java.lang.Class.getDeclaredMethods0(Native Method)
at java.lang.Class.privateGetDeclaredMethods(Class.java:2427)
at java.lang.Class.getDeclaredMethods(Class.java:1791)
at java.security.AccessController.doPrivileged(Native Method)
at org.codehaus.groovy.util.LazyReference.getLocked(LazyReference.java:46)
at org.codehaus.groovy.util.LazyReference.get(LazyReference.java:33)
at grails.util.PluginBuildSettings.getPluginInfos(PluginBuildSettings.groovy:123)
at grails.util.PluginBuildSettings.getPluginInfos(PluginBuildSettings.groovy)
at grails.util.PluginBuildSettings$getPluginInfos.callCurrent(Unknown Source)
at grails.util.PluginBuildSettings.getPluginInfoForName(PluginBuildSettings.groovy:180)
at grails.util.PluginBuildSettings$getPluginInfoForName.call(Unknown Source)
at _PluginDependencies_groovy$_run_closure1.doCall(_PluginDependencies_groovy:66)
at _PackagePlugins_groovy$_run_closure2.doCall(_PackagePlugins_groovy:69)
at _GrailsPackage_groovy$_run_closure2.doCall(_GrailsPackage_groovy:81)
at RunApp$_run_closure1.doCall(RunApp.groovy:28)
at gant.Gant$_dispatch_closure5.doCall(Gant.groovy:381)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy:415)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy)
at gant.Gant.withBuildListeners(Gant.groovy:427)
at gant.Gant.this$2$withBuildListeners(Gant.groovy)
at gant.Gant$this$2$withBuildListeners.callCurrent(Unknown Source)
at gant.Gant.dispatch(Gant.groovy:415)
at gant.Gant.this$2$dispatch(Gant.groovy)
at gant.Gant.invokeMethod(Gant.groovy)
at gant.Gant.executeTargets(Gant.groovy:590)
at gant.Gelpant.executeTargets(Gant.groovy:589)
Error executing script RunApp: loader constraint violation: loader (instance of <bootloader>) previously initiated loading for a different type with name "org/xml/sax/SAXParseException"
What is wrong? Please help...

Adding this in BuildConfig.groovy worked for me:
inherits("global") {
excludes "xml-apis"
}
Source: http://arrogantprogrammer.blogspot.com.ar/2010/07/grails-linkageerror-for.html

That seems to be the result of a classpath hell...
Two dependencies link the same jar with different versions
Check your dependencies, spot the guilty jar (which seems to be a Sax Parser) and remove this linkage in your BuildConfig.groovy
Cheers
Grooveek

SaxParseException is loaded by the JVM and I guess the plugin is loading an older version.
Just add the excludes parameter to the plugin
Run grails "dependency-report" to find out which jar is causing the problem.

Related

OH-SCM-009: Error occurred while sync. Source parameters not found to download the source file

I have a problem with the OpsHub Visual Studio Migration Utility. It sometimes halts at a apparently randome changeset during migration, and I am not able to get it to continue. The error message of the failed changeset is:
OH-SCM-009: Error occurred while sync. Source parameters not found to
download the source
file:24::3117::$/Solution/Project/ProjectFolder/SomeFile.cs
I have succeded with migration of a couple of project by repeating the whole thing. But for larger projects I never get through the complete migration. And the problematic changeset is different each time.
Looking at the log, i could find some exceptions thrown like this:
08/11/2016 12:10:30,922 ERROR [DefaultQuartzScheduler_Worker-5] (org.jbpm.graph.def.GraphElement) - action threw exception: script evaluation exception
org.jbpm.graph.def.DelegationException: script evaluation exception
at org.jbpm.graph.action.Script.eval(Script.java:139)
at org.jbpm.graph.action.Script.eval(Script.java:73)
at org.jbpm.graph.action.Script.execute(Script.java:62)
at org.jbpm.graph.def.GraphElement.executeAction(GraphElement.java:259)
at org.jbpm.graph.def.GraphElement.executeActions(GraphElement.java:215)
at org.jbpm.graph.def.GraphElement.fireAndPropagateEvent(GraphElement.java:185)
at org.jbpm.graph.def.GraphElement.fireEvent(GraphElement.java:169)
at org.jbpm.graph.def.Transition.take(Transition.java:138)
at org.jbpm.graph.def.Node.leave(Node.java:393)
at org.jbpm.graph.exe.Token.signal(Token.java:192)
at org.jbpm.graph.exe.Token.signal(Token.java:140)
at org.jbpm.graph.exe.ProcessInstance.signal(ProcessInstance.java:270)
at com.opshub.eai.ProcessEngine.executeTask(ProcessEngine.java:190)
at com.opshub.eai.ProcessEngine.executeProcess(ProcessEngine.java:60)
at com.opshub.eai.SyncEaiProcess.syncEvent(SyncEaiProcess.java:230)
at com.opshub.eai.SyncEaiProcess.sync(SyncEaiProcess.java:137)
at com.opshub.eai.OIMEventGenerator.process(OIMEventGenerator.java:428)
at com.opshub.jobs.core.OHJob.execute(OHJob.java:125)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:525)
Caused by: com.opshub.eai.core.exceptions.OIMSCMAdapterException: OH-SCM-009: Error occurred while sync. Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at com.opshub.eai.core.adapters.OIMSCMAdapter.sync(OIMSCMAdapter.java:409)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at bsh.Reflect.invokeMethod(Unknown Source)
at bsh.Reflect.invokeObjectMethod(Unknown Source)
at bsh.Name.invokeMethod(Unknown Source)
at bsh.BSHMethodInvocation.eval(Unknown Source)
at bsh.BSHPrimaryExpression.eval(Unknown Source)
at bsh.BSHVariableDeclarator.eval(Unknown Source)
at bsh.BSHTypedVariableDeclaration.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at org.jbpm.graph.action.Script.eval(Script.java:130)
... 19 more
Caused by: java.lang.RuntimeException: Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at com.opshub.eai.tfssource.adapter.TFSVersionControlConnector.checkInAll(TFSVersionControlConnector.java:166)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter.checkIn(TFSSourceAdapter.java:246)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04.CGLIB$checkIn$17(<generated>)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04$$FastClassByCGLIB$$cee96b8e.invoke(<generated>)
at net.sf.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:167)
at com.opshub.eai.core.adapters.caching.AdapterCacheHandler.intercept(AdapterCacheHandler.java:185)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04.checkIn(<generated>)
at com.opshub.eai.core.adapters.OIMSCMAdapter.sync(OIMSCMAdapter.java:325)
... 34 more
Caused by: Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
at org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
at org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:609)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:1782)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2973)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:606)
at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:117)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:848)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:777)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:649)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:333)
at org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at com.opshub.tfs.test.BasicHttpBinding_ITFSWebServiceStub.checkinAllStatus(BasicHttpBinding_ITFSWebServiceStub.java:6282)
at com.opshub.eai.tfssource.adapter.TFSVersionControlConnector.checkInAll(TFSVersionControlConnector.java:155)
... 41 more
08/11/2016 12:10:30,924 ERROR [DefaultQuartzScheduler_Worker-5] (com.opshub.eai.SyncEaiProcess) - Error in executing process definition : SCM Default Integration Workflow at node callMethodOpsHub-012013: Process execution failed on node: callMethod, in process definition: 'SCM Default Integration Workflow'; nested exception is : script evaluation exception
com.opshub.exceptions.eai.EAIProcessEngineException: OpsHub-012013: Process execution failed on node: callMethod, in process definition: 'SCM Default Integration Workflow'; nested exception is : script evaluation exception
at com.opshub.eai.ProcessEngine.executeTask(ProcessEngine.java:212)
at com.opshub.eai.ProcessEngine.executeProcess(ProcessEngine.java:60)
at com.opshub.eai.SyncEaiProcess.syncEvent(SyncEaiProcess.java:230)
at com.opshub.eai.SyncEaiProcess.sync(SyncEaiProcess.java:137)
at com.opshub.eai.OIMEventGenerator.process(OIMEventGenerator.java:428)
at com.opshub.jobs.core.OHJob.execute(OHJob.java:125)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:525)
Caused by: org.jbpm.graph.def.DelegationException: script evaluation exception
at org.jbpm.graph.action.Script.eval(Script.java:139)
at org.jbpm.graph.action.Script.eval(Script.java:73)
at org.jbpm.graph.action.Script.execute(Script.java:62)
at org.jbpm.graph.def.GraphElement.executeAction(GraphElement.java:259)
at org.jbpm.graph.def.GraphElement.executeActions(GraphElement.java:215)
at org.jbpm.graph.def.GraphElement.fireAndPropagateEvent(GraphElement.java:185)
at org.jbpm.graph.def.GraphElement.fireEvent(GraphElement.java:169)
at org.jbpm.graph.def.Transition.take(Transition.java:138)
at org.jbpm.graph.def.Node.leave(Node.java:393)
at org.jbpm.graph.exe.Token.signal(Token.java:192)
at org.jbpm.graph.exe.Token.signal(Token.java:140)
at org.jbpm.graph.exe.ProcessInstance.signal(ProcessInstance.java:270)
at com.opshub.eai.ProcessEngine.executeTask(ProcessEngine.java:190)
... 7 more
Caused by: com.opshub.eai.core.exceptions.OIMSCMAdapterException: OH-SCM-009: Error occurred while sync. Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at com.opshub.eai.core.adapters.OIMSCMAdapter.sync(OIMSCMAdapter.java:409)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at bsh.Reflect.invokeMethod(Unknown Source)
at bsh.Reflect.invokeObjectMethod(Unknown Source)
at bsh.Name.invokeMethod(Unknown Source)
at bsh.BSHMethodInvocation.eval(Unknown Source)
at bsh.BSHPrimaryExpression.eval(Unknown Source)
at bsh.BSHVariableDeclarator.eval(Unknown Source)
at bsh.BSHTypedVariableDeclaration.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at bsh.Interpreter.eval(Unknown Source)
at org.jbpm.graph.action.Script.eval(Script.java:130)
... 19 more
Caused by: java.lang.RuntimeException: Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at com.opshub.eai.tfssource.adapter.TFSVersionControlConnector.checkInAll(TFSVersionControlConnector.java:166)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter.checkIn(TFSSourceAdapter.java:246)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04.CGLIB$checkIn$17(<generated>)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04$$FastClassByCGLIB$$cee96b8e.invoke(<generated>)
at net.sf.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:167)
at com.opshub.eai.core.adapters.caching.AdapterCacheHandler.intercept(AdapterCacheHandler.java:185)
at com.opshub.eai.tfssource.adapter.TFSSourceAdapter$$EnhancerByCGLIB$$2a6a7d04.checkIn(<generated>)
at com.opshub.eai.core.adapters.OIMSCMAdapter.sync(OIMSCMAdapter.java:325)
... 34 more
Caused by: Source parameters not found to download the source file:24::3117::$/Solution/Project/ApiControllers/PersonServiceController.cs
at org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
at org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
at org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:609)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanEndElement(XMLDocumentFragmentScannerImpl.java:1782)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2973)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:606)
at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:117)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:848)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:777)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:141)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1213)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:649)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl.parse(SAXParserImpl.java:333)
at org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at com.opshub.tfs.test.BasicHttpBinding_ITFSWebServiceStub.checkinAllStatus(BasicHttpBinding_ITFSWebServiceStub.java:6282)
at com.opshub.eai.tfssource.adapter.TFSVersionControlConnector.checkInAll(TFSVersionControlConnector.java:155)
... 41 more
Upgrading to the newest version solved my problem. The failing version was 2.2.4 and the new version is 2.2.5.

Websphere Application server not starting

We have one Websphere Application server instance which went down with OutOfMemory and is not starting after that. The error message in the log below. Any urgent help will be highly appreciated. WAS version is 6.0.2.33
03/04/13 14:16:01:536 BST] 0000000a WsServerImpl E WSVR0009E: Error occurred during startup
META-INF/ws-server-components.xml
[03/04/13 14:16:01:547 BST] 0000000a WsServerImpl E WSVR0009E: Error occurred during startup
com.ibm.ws.exception.ConfigurationError: com.ibm.ws.exception.ConfigurationError: Problem initializing AdminImpl:
at com.ibm.ws.runtime.WsServerImpl.bootServerContainer(WsServerImpl.java:180)
at com.ibm.ws.runtime.WsServerImpl.start(WsServerImpl.java:133)
at com.ibm.ws.runtime.WsServerImpl.main(WsServerImpl.java:387)
at com.ibm.ws.runtime.WsServer.main(WsServer.java:53)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:85)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:58)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:60)
at java.lang.reflect.Method.invoke(Method.java:391)
at com.ibm.ws.bootstrap.WSLauncher.run(WSLauncher.java:219)
at java.lang.Thread.run(Thread.java:568)
Caused by: com.ibm.ws.exception.ConfigurationError: Problem initializing AdminImpl:
at com.ibm.ws.management.component.AdminImpl.initialize(AdminImpl.java:780)
at com.ibm.ws.runtime.component.ContainerImpl.initializeComponent(ContainerImpl.java:1160)
at com.ibm.ws.runtime.component.ContainerImpl.initializeComponents(ContainerImpl.java:1014)
at com.ibm.ws.runtime.component.ServerImpl.initialize(ServerImpl.java:284)
at com.ibm.ws.runtime.WsServerImpl.bootServerContainer(WsServerImpl.java:173)
... 10 more
Caused by: com.ibm.ws.exception.ConfigurationWarning: Problem registering JVM MBean.
at com.ibm.ws.management.component.AdminImpl.initialize(AdminImpl.java:405)
... 14 more
Caused by: com.ibm.websphere.management.exception.AdminException: ADMN0005E: The service is unable to activate MBean: type JVM, collaborator com.ibm.ws.management.component.JVMMBean#6da65714, configuration ID JVM, descriptor null.
at com.ibm.ws.management.MBeanFactoryImpl.activateMBean(MBeanFactoryImpl.java:654)
at com.ibm.ws.management.MBeanFactoryImpl.activateMBean(MBeanFactoryImpl.java:400)
at com.ibm.ws.management.component.AdminImpl.initialize(AdminImpl.java:394)
... 14 more
Caused by: com.ibm.websphere.management.exception.DescriptorParseException: ADMN0001W: The service is unable to parse the MBean descriptor file com/ibm/ws/management/descriptor/xml/JVM.xml.
at com.ibm.ws.management.descriptor.MBeanDescriptorLoader.loadDescriptor(MBeanDescriptorLoader.java:164)
at com.ibm.ws.management.descriptor.MBeanDescriptorManager.loadDescriptorFile(MBeanDescriptorManager.java:349)
at com.ibm.ws.management.descriptor.MBeanDescriptorManager.getDescriptor(MBeanDescriptorManager.java:147)
at com.ibm.ws.management.MBeanFactoryImpl.activateMBean(MBeanFactoryImpl.java:427)
... 16 more
Caused by: java.lang.NullPointerException
at javax.management.MBeanNotificationInfo.equals(MBeanNotificationInfo.java:155)
at com.ibm.ws.management.descriptor.MBeanDescriptorLoader.addFeatures(MBeanDescriptorLoader.java:461)
at com.ibm.ws.management.descriptor.MBeanDescriptorLoader.loadParentTypes(MBeanDescriptorLoader.java:434)
at com.ibm.ws.management.descriptor.MBeanDescriptorLoader.endDocument(MBeanDescriptorLoader.java:217)
at org.apache.xerces.parsers.AbstractSAXParser.endDocument(Unknown Source)
at org.apache.xerces.impl.dtd.XMLDTDValidator.endDocument(Unknown Source)
at org.apache.xerces.impl.XMLDocumentScannerImpl.endEntity(Unknown Source)
at org.apache.xerces.impl.XMLEntityManager.endEntity(Unknown Source)
at org.apache.xerces.impl.XMLEntityScanner.load(Unknown Source)
at org.apache.xerces.impl.XMLEntityScanner.skipSpaces(Unknown Source)
at org.apache.xerces.impl.XMLDocumentScannerImpl$TrailingMiscDispatcher.dispatch(Unknown Source)
at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
at com.ibm.ws.management.descriptor.MBeanDescriptorLoader.loadDescriptor(MBeanDescriptorLoader.java:155)
... 19 more
I think your websphere is trying to use SUN JDK/JRE instead of IBM JDK/JRE.
you can delete all instance of Websphere servers and then you need to restart it and synch the node , node agent before to check jdk version in your environment path in the WAS.

Ant fails to locate XML catalog resolver

My Ant 1.8.2 build started failing with HTTP 303 responses from the W3C web site in response to requests for SVG DTDs. So I'm trying to introduce an XML Catalog to resolve them locally.
If I make no changes to the classpath, I get:
Warning: XML resolver not found; external catalogs will be ignored
If I add resolver.jar from Apache XML Commons 1.2 to the classpath (e.g. by using -lib on the ant invocation), I get
/Users/mike/..../build.xml:123: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tools.ant.types.XMLCatalog$ExternalResolver.processExternalCatalogs(XMLCatalog.java:1115)
at org.apache.tools.ant.types.XMLCatalog$ExternalResolver.resolveEntity(XMLCatalog.java:960)
at org.apache.tools.ant.types.XMLCatalog.resolveEntity(XMLCatalog.java:391)
which suggests to me that the resolver.jar I am using has been located, but doesn't have the interface that Ant is expecting.
Where should I get the correct resolver.jar to use with Ant?
I found the solution (well, a workaround...)
The InvocationTargetException turned out to be a red herring - a secondary error. The primary error was as follows: my catalog file catalog.xml contained a relative reference to a DTD catalog.dtd, and Ant (or the resolver) was failing to resolve the reference to catalog.dtd. It was looking in the directory containing my build file, not the directory containing the catalog. This is clearly a bug somewhere; my suspicion, if I were investigating further, would be that Ant is passing the catalog file to the catalog resolver with no base URI, or with an incorrect base URI, so the XML parser has to guess where to find the DTD, and guesses wrong.
My solution was to remove the reference to the DTD. After this, URIs listed in the catalog were correctly resolved to local copies. Interestingly, the references to local copies are also relative to the catalog, so it seems that the catalog resolver knows where the catalog is, but someone isn't telling Xerces at the time it is parsed.
I had the same issue, but for me, the upgrading from Ant 1.8.1 to 1.9.4 solved the problem.
My guess is that the root cause is bug 52754.
EDIT: The same issue resurfaced in a slightly different form, using JDK 1.6.0_18, with a stack trace like this:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tools.ant.types.XMLCatalog$ExternalResolver.processExternalCatalogs(XMLCatalog.java:1116)
at org.apache.tools.ant.types.XMLCatalog$ExternalResolver.resolve(XMLCatalog.java:1007)
at org.apache.tools.ant.types.XMLCatalog.resolve(XMLCatalog.java:420)
at net.sf.saxon.style.XSLGeneralIncorporate.getIncludedStylesheet(XSLGeneralIncorporate.java:104)
at net.sf.saxon.style.XSLStylesheet.spliceIncludes(XSLStylesheet.java:754)
at net.sf.saxon.style.XSLStylesheet.preprocess(XSLStylesheet.java:676)
at net.sf.saxon.PreparedStylesheet.setStylesheetDocument(PreparedStylesheet.java:331)
at net.sf.saxon.PreparedStylesheet.prepare(PreparedStylesheet.java:163)
at net.sf.saxon.TransformerFactoryImpl.newTemplates(TransformerFactoryImpl.java:139)
at org.apache.tools.ant.taskdefs.optional.TraXLiaison.readTemplates(TraXLiaison.java:300)
at org.apache.tools.ant.taskdefs.optional.TraXLiaison.createTransformer(TraXLiaison.java:317)
at org.apache.tools.ant.taskdefs.optional.TraXLiaison.transform(TraXLiaison.java:178)
at org.apache.tools.ant.taskdefs.XSLTProcess.process(XSLTProcess.java:842)
at org.apache.tools.ant.taskdefs.XSLTProcess.execute(XSLTProcess.java:432)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:435)
at org.apache.tools.ant.Target.performTasks(Target.java:456)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393)
at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
at org.apache.tools.ant.Project.executeTargets(Project.java:1248)
at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:441)
at org.apache.tools.ant.taskdefs.CallTarget.execute(CallTarget.java:105)
at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:435)
at org.apache.tools.ant.Target.performTasks(Target.java:456)
at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393)
at org.apache.tools.ant.Project.executeTarget(Project.java:1364)
at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
at org.apache.tools.ant.Project.executeTargets(Project.java:1248)
at org.apache.tools.ant.Main.runBuild(Main.java:851)
at org.apache.tools.ant.Main.startAnt(Main.java:235)
at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
Caused by: java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.substring(String.java:1937)
at java.lang.String.substring(String.java:1904)
at org.apache.xml.resolver.helpers.PublicId.normalize(Unknown Source)
at org.apache.xml.resolver.Catalog.addEntry(Unknown Source)
at org.apache.tools.ant.types.resolver.ApacheCatalog.addEntry(ApacheCatalog.java:118)
at org.apache.xml.resolver.readers.OASISXMLCatalogReader.startElement(Unknown Source)
at org.apache.xml.resolver.readers.SAXCatalogReader.startElement(Unknown Source)
at org.apache.xml.resolver.readers.SAXParserHandler.startElement(Unknown Source)
at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)
at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at org.apache.xml.resolver.readers.SAXCatalogReader.readCatalog(Unknown Source)
at org.apache.xml.resolver.Catalog.parseCatalogFile(Unknown Source)
at org.apache.xml.resolver.Catalog.parsePendingCatalogs(Unknown Source)
at org.apache.xml.resolver.Catalog.parseCatalog(Unknown Source)
at org.apache.tools.ant.types.resolver.ApacheCatalogResolver.parseCatalog(ApacheCatalogResolver.java:118)
... 47 more
Interestingly, the error only occurred on Windows and only sporadically, maybe one time out of seven or so.
The error originates in the normalize function of the PublicId class in the Apache Resolver library.
normal.indexOf(" ") would sometimes return the wrong value. For example, if the input string was -//OASIS//ELEMENTS DITA 1.x Programming Domain//EN, the pos variable would get 50 as its value, even though the public ID string has no extra spaces whatsoever.
That leads me to think that the root cause might be somehow related to JDK bug #6967156, but I can't be sure at all, since in our case, the error was intermittent, but nothing in the bug report suggests that.

Tomcat ClassNotFound exception when trying to run Application

I have a grails application that I was running fine until yesterday when I decided to download an Email plugin into the STS. The download failed for some reason and I got around the issue with a few searches around. Once I resolved the plugin issues, my application stopped to work. I tried a lot of things including re-installing STS. I was maintaining a GIT repository and I reverted all my changes to the last known working one. This did not help either. I created a new Grails project and copied all my source files over there and everything was working fine.
I compared all the build paths and properties files between the working one and the non working one and they seem to be the same except the .classpath which is getting changed every time I try to run the application like the below
+ <classpathentry exported="true" kind="con" path="GROOVY_DSL_SUPPORT"/>
<classpathentry kind="con" path="com.springsource.sts.grails.core.CLASSP
- <classpathentry kind="src" path=".link_to_grails_plugins/tomcat-1.3.7/sr
- <attributes>
- <attribute name="com.springsource.sts.grails.core.SOURCE
- </attributes>
- </classpathentry>
Can anyone please help me with where I should be looking to get this application back on track??
Here is the Error that I get:
Welcome to Grails 1.3.7 - http://grails.org/
Licensed under Apache Standard License 2.0
Grails home is set to: /Users/mymac/springsource/grails-1.3.7/
Base Directory: /Users/mymac/MyProjects/MyGitSources/books_grails/books
Resolving dependencies...
Dependencies resolved in 862ms.
Running script /Users/mymac/springsource/grails-1.3.7/scripts/RunApp.groovy
Environment set to development
[copy] Copying 1 file to /Users/mymac/.grails/1.3.7/projects/books
WARNING: No default container found, installing Tomcat..
Resolving plugin tomcat. Please wait...
Error executing script RunApp: java.lang.ClassNotFoundException: org.grails.tomcat.TomcatServerFactory
java.lang.ClassNotFoundException: org.grails.tomcat.TomcatServerFactory
at gant.Gant$_dispatch_closure5.doCall(Gant.groovy:391)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy:415)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy)
at gant.Gant.withBuildListeners(Gant.groovy:427)
at gant.Gant.this$2$withBuildListeners(Gant.groovy)
at gant.Gant$this$2$withBuildListeners.callCurrent(Unknown Source)
at gant.Gant.dispatch(Gant.groovy:415)
at gant.Gant.this$2$dispatch(Gant.groovy)
at gant.Gant.invokeMethod(Gant.groovy)
at gant.Gant.executeTargets(Gant.groovy:590)
at gant.Gant.executeTargets(Gant.groovy:589)
Caused by: java.lang.ClassNotFoundException: org.grails.tomcat.TomcatServerFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
at java_lang_ClassLoader$loadClass.call(Unknown Source)
at _GrailsRun_groovy$_loadServerFactory_closure11.doCall(_GrailsRun_groovy:85)
at _GrailsRun_groovy.loadServerFactory(_GrailsRun_groovy:101)
at _GrailsRun_groovy.this$4$loadServerFactory(_GrailsRun_groovy)
at _GrailsRun_groovy$this$4$loadServerFactory.callCurrent(Unknown Source)
at _GrailsRun_groovy.runInline(_GrailsRun_groovy:114)
at _GrailsRun_groovy.this$4$runInline(_GrailsRun_groovy)
at _GrailsRun_groovy$_run_closure1.doCall(_GrailsRun_groovy:59)
at RunApp$_run_closure1.doCall(RunApp:33)
at gant.Gant$_dispatch_closure5.doCall(Gant.groovy:381)
... 10 more
--- Nested Exception ---
java.lang.ClassNotFoundException: org.grails.tomcat.TomcatServerFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
at java_lang_ClassLoader$loadClass.call(Unknown Source)
at _GrailsRun_groovy$_loadServerFactory_closure11.doCall(_GrailsRun_groovy:85)
at _GrailsRun_groovy.loadServerFactory(_GrailsRun_groovy:101)
at _GrailsRun_groovy.this$4$loadServerFactory(_GrailsRun_groovy)
at _GrailsRun_groovy$this$4$loadServerFactory.callCurrent(Unknown Source)
at _GrailsRun_groovy.runInline(_GrailsRun_groovy:114)
at _GrailsRun_groovy.this$4$runInline(_GrailsRun_groovy)
at _GrailsRun_groovy$_run_closure1.doCall(_GrailsRun_groovy:59)
at RunApp$_run_closure1.doCall(RunApp:33)
at gant.Gant$_dispatch_closure5.doCall(Gant.groovy:381)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy:415)
at gant.Gant$_dispatch_closure7.doCall(Gant.groovy)
at gant.Gant.withBuildListeners(Gant.groovy:427)
at gant.Gant.this$2$withBuildListeners(Gant.groovy)
at gant.Gant$this$2$withBuildListeners.callCurrent(Unknown Source)
at gant.Gant.dispatch(Gant.groovy:415)
at gant.Gant.this$2$dispatch(Gant.groovy)
at gant.Gant.invokeMethod(Gant.groovy)
at gant.Gant.executeTargets(Gant.groovy:590)
at gant.Gant.executeTargets(Gant.groovy:589)
Error executing script RunApp: java.lang.ClassNotFoundException: org.grails.tomcat.TomcatServerFactory
[UPDATE]:
When I tried to install the mail plugin in my new working project again, The same error is reproduced if I try to run my application. Somehow the plugin is screwing up my application. Now I don't know how the plugins are installed and what they change in a project :-(
Thanks!!
Posting it as an answer just in case anybody needs to find a solution...
I removed all the projects from under ~/.grails and also cleared the files that had my Project references. I re-imported my project into STS and it started to work again.
I guess the issue was because of the mail plugin. Since my maven repositories was commented out in the BuildConfig.groovy
//mavenLocal()
//mavenCentral()
installation of plugin failed and somehow messed up my project. I created a temp project, installed these plugins with the above lines uncommented, cleaned the original project as mentioned above and re-built my project.
Since now my plugins are locally available, I was able to install them into my main project without any hassle.
Though not a clean one and not sure if there is an existing issue with the failed plugin installations, I am posting this in case anyone runs into the same issue again!
Thanks!!

jgrapht-jdk1.6 "HelloJGraphT.java" compilation problem

JGraphT package includes some examples to experiment oneself. HelloJGraphT.java is one of them. I can run it, without any error, in Netbeans6.0.1. But, when i use dos command prompt in the following way:
javac -cp jgrapht-jdk1.6.jar HelloJGraphT.java
it compiles. But, if i run it using:
java HelloJGraphT
it gives the following errors:
Exception in thread "main" java.lang.NoClassDefFoundError: org/jgrapht/Graph
Caused by: java.lang.ClassNotFoundException: org.jgrapht.Graph
at java.net.URLClassLoader$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClassInternal(Unknown Source)
Any clue?
I'm using jdk 1.6
You need to import the JGraphT library to your project.

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