Parsing semi-structured data - can I use any classifiers? - parsing

I've got a set of documents which have a semi-regular format. Rows are typically separated by new line characters, and the main components of each row are separated by spaces. Some examples are a set of furniture assembly instructions, a set of table of contents, a set of recipes and a set of bank statements.
The problem is that each specimen in each set is different from its peer members in ways which make RegEx parsing infeasible: the quantity of an item may come before or after the item name, the same items may have different names between specimens, expository text or notes may exist between rows, etc.
I've used classifiers (Neural Nets, Bayesian, GA and GP) to deal with whole documents or data sets, but not to extract items from documents and classify them within a context. Can this be done? Is there a more feasible approach?

If your data has structure, arguably you can use a grammar to describe some of that structure. (Classically you use grammars to recognize what they can, often too much, and extra-grammatical checks to prune away what the grammars cannot eliminate).
If you use a grammar that can run parallel potential parses, which eliminate parses as they become infeasible,
you can parse different ordering straightforwardly. (A GLR parser can do this nicely).
Imaging you have NUMBERS describing amounts, NOUNS describing various objects, and VERBS for actions.
Then a grammar that can accept varying orders of items might be:
G = SENTENCE '.' ;
SENTENCE = VERB NOUN NUMBER ;
SENTENCE = NOUN VERB NUMBER;
VERB = 'ORDER' | 'SAW' ;
NUMBER = '1' | '2' | '10' ;
NOUN = 'JOE' | 'TABLE' | 'SAW' ;
This sample is extremely simple, but it will handle:
JOE ORDERED 10.
JOE SAW 1.
ORDER 2 SAW.
It will also accept:
SAW SAW 10.
You can eliminate this by adding an external constraint that actors must be people.

There are plenty of methods to do that. It is an active research area called: information extraction. In particular information extraction from semi-structured sources.

Related

All viable prefixes of a Context Free Grammer

I am stuck to a problem from the famous dragon Book of Compiler Design.How to find all the viable prefixes of the following grammar:
S -> 0S1 | 01
The grammar is actually the language of the regex 0n1n.
I presume the set of all viable prefixes might come as a regex too.I came up with the following solution
0+
0+S
0+S1
0+1
S
(By plus , I meant no of zeroes is 1..inf)
after reducing string 000111 with the following steps:
stack input
000111
0 00111
00 0111
000 111
0001 11
00S 11
00S1 1
0S 1
0S1 $
S $
Is my solution correct or I am missing something?
0n1n is not a regular language; regexen don't have variables like n and they cannot enforce an equal number of repetitions of two distinct subsequences. Nonetheless, for any context-free grammar, the set of viable prefixes is a regular language. (A proof of this fact, in some form, appears at the beginning of Part II of Donald Knuth's seminal 1965 paper, On the Translation of Languages from Left to Right, which demonstrated both a test for the LR(k) property and an algorithm for parsing LR(k) grammars in linear time.)
OK, to the actual question. A viable prefix for a grammar is (by definition) the prefix of a sentential form which can appear on the stack during a parse using that grammar. It's called "viable" (which means "still alive" or "could continue growing") precisely because it must be the prefix of some right sentential form whose suffix contains no non-terminal symbol. In other words, there exists a sequence of terminals which can be appended to the viable prefix in order to produce a right-sentential form; the viable prefix can grow.
Knuth shows how to create a DFA which produces all viable prefixes, but it's easier to see this DFA if we already have the LR(k) parser produced by an LR(k) algorithm. That parser is a finite-state machine whose alphabet is the set of terminal and non-terminal symbols of a grammar. To get the viable-prefix grammar, we use exactly the same state machine, but we remove the stack (so that it becomes just a state machine) and the reduce actions, leaving only the shift and goto actions as transitions. All states in the viable-prefix machine are accepting states, since any prefix of a viable prefix is itself a viable prefix.
A key feature of this new automaton is that it cannot extend a prefix with a reduce action (since we removed all the reduce actions). A prefix with a reduce action is a prefix which ends in a handle -- recall that a handle is the right-hand side of some production -- so another definition of a viable prefix is that it is a right-sentential form (that is, a possible step in a derivation) which does not extend beyond the right-most handle.
The grammar you are working with has only two productions, so there are only two handles, 01 and 0S1. Note that 10 and 1S cannot be subsequences of any right-sentential form, nor can a right-sentential form contain more than one S. Any right-sentential form must either be a sentence 0n1n or a sentential form 0nS1n where n>0. But every handle ends at the first 1 of a sentential form, and so a viable prefix must end at or before the first 1. This produces precisely the four possibilities you list, which we can condense to the regular expression 0*0(S1?)?.
Chopping off the suffix removed the second n from the formula, so there is no longer a requirement of concordance and the language is regular.
Note:
Questions like this and their answers are begging to be rendered using MathJax. StackOverflow, unfortunately, does not provide this extension, which is apparently considered unnecessary for programming. However, there is a site in the StackExchange constellation dedicated to computing science questions, http://cs.stackexchange.com, and another one dedicated to mathematical questions, http://math.stackexchange.com. Formal language theory is part of both computing science and mathematics. Both of those sites permit MathJax, and questions on those sites will not be closed because they are not programming questions. I suggest you take this information into account for questions like this one.

Extracting from .bib file with Raku (previously aka Perl 6)

I have this .bib file for reference management while writing my thesis in LaTeX:
#article{garg2017patch,
title={Patch testing in patients with suspected cosmetic dermatitis: A retrospective study},
author={Garg, Taru and Agarwal, Soumya and Chander, Ram and Singh, Aashim and Yadav, Pravesh},
journal={Journal of Cosmetic Dermatology},
year={2017},
publisher={Wiley Online Library}
}
#article{hauso2008neuroendocrine,
title={Neuroendocrine tumor epidemiology},
author={Hauso, Oyvind and Gustafsson, Bjorn I and Kidd, Mark and Waldum, Helge L and Drozdov, Ignat and Chan, Anthony KC and Modlin, Irvin M},
journal={Cancer},
volume={113},
number={10},
pages={2655--2664},
year={2008},
publisher={Wiley Online Library}
}
#article{siperstein1997laparoscopic,
title={Laparoscopic thermal ablation of hepatic neuroendocrine tumor metastases},
author={Siperstein, Allan E and Rogers, Stanley J and Hansen, Paul D and Gitomirsky, Alexis},
journal={Surgery},
volume={122},
number={6},
pages={1147--1155},
year={1997},
publisher={Elsevier}
}
If anyone wants to know what bib file is, you can find it detailed here.
I'd like to parse this with Perl 6 to extract the key along with the title like this:
garg2017patch: Patch testing in patients with suspected cosmetic dermatitis: A retrospective study
hauso2008neuroendocrine: Neuroendocrine tumor epidemiology
siperstein1997laparoscopic: Laparoscopic thermal ablation of hepatic neuroendocrine tumor metastases
Can you please help me to do this, maybe in two ways:
Using basic Perl 6
Using a Perl 6 Grammar
TL;DR
A complete and detailed answer that does just exactly as #Suman asks.
An introductory general answer to "I want to parse X. Can anyone help?"
A one-liner in a shell
I'll start with terse code that's perfect for some scenarios[1], and which someone might write if they're familiar with shell and Raku basics and in a hurry:
> raku -e 'for slurp() ~~ m:g / "#article\{" (<-[,]>+) \, \s+
"title=\{" (<-[}]>+) \} / -> $/ { put "$0: $1\n" }' < derm.bib
This produces precisely the output you specified:
garg2017patch: Patch testing in patients with suspected cosmetic dermatitis: A retrospective study
hauso2008neuroendocrine: Neuroendocrine tumor epidemiology
siperstein1997laparoscopic: Laparoscopic thermal ablation of hepatic neuroendocrine tumor metastases
Same single statement, but in a script
Skipping shell escapes and adding:
Whitespace.
Comments.
► use tio.run to run the code below
for slurp() # "slurp" (read all of) stdin and then
~~ m :global # match it "globally" (all matches) against
/ '#article{' (<-[,]>+) ',' \s+ # a "nextgen regex" that uses (`(...)`) to
'title={' (<-[}]>+) '}' / # capture the article id and title and then
-> $/ { put "$0: $1\n" } # for each article, print "article id: title".
Don't worry if the above still seems like pure gobbledygook. Later sections explain the above while also introducing code that's more general, clean, and readable.[2]
Four statements instead of one
my \input = slurp;
my \pattern = rule { '#article{' ( <-[,]>+ ) ','
'title={' ( <-[}]>+ ) }
my \articles = input .match: pattern, :global;
for articles -> $/ { put "$0: $1\n" }
my declares a lexical variable. Raku supports sigils at the start of variable names. But it also allows devs to "slash them out" as I have done.
my \pattern ...
my \pattern = rule { '#article{' ( <-[,]>+ ) ','
'title={' ( <-[}]>+ ) }
I've switched the pattern syntax from / ... / in the original one-liner to rule { ... }. I did this to:
Eliminate the risk of pathological backtracking
Classic regexes risk pathological backtracking. That's fine if you can just kill a program that's gone wild, but click the link to read how bad it can get! 🤪 We don't need backtracking to match the .bib format.
Communicate that the pattern is a rule
If you write a good deal of pattern matching code, you'll frequently want to use rule { ... }. A rule eliminates any risk of the classic regex problem just described (pathological backtracking), and has another superpower. I'll cover both aspects below, after first introducing the adverbs corresponding to those superpowers.
Raku regexes/rules can be (often are) used with "adverbs". These are convenient shortcuts that modify how patterns are applied.
I've already used an adverb in the earlier versions of this code. The "global" adverb (specified using :global or its shorthand alias :g) directs the matching engine to consume all of the input, generating a list of as many matches as it contains, instead of returning just the first match.
While there are shorthand aliases for adverbs, some are used so repeatedly that it's a lot tidier to bundle them up into distinct rule declarators. That's why I've used rule. It bundles up two adverbs appropriate for matching many data formats like .bib files:
:ratchet (alias :r)
:sigspace (alias :s)
Ratcheting (:r / :ratchet) tells the compiler that when an "atom" (a sub-pattern in a rule that is treated as one unit) has matched, there can be no going back on that. If an atom further on in the pattern in the same rule fails, then the whole rule immediately fails.
This eliminates any risk of the "pathological backtracking" discussed earlier.
Significant space handling (:s / :sigspace) tells the compiler that an atom followed by literal spacing that is in the pattern indicates that a "token" boundary pattern, aka ws should be appended to the atom.
Thus this adverb deals with tokenizing. Did you spot that I'd dropped the \s+ from the pattern compared to the original one in the one-liner? That's because :sigspace, which use of rule implies, takes care of that automatically:
say 'x#y x # y' ~~ m:g:s /x\#y/; # (「x#y」) <-- only one match
say 'x#y x # y' ~~ m:g /x \# y/; # (「x#y」) <-- only one match
say 'x#y x # y' ~~ m:g:s /x \# y/; # (「x#y」 「x # y」) <-- two matches
You might wonder why I've reverted to using / ... / to show these two examples. Turns out that while you can use rule { ... } with the .match method (described in the next section), you can't use rule with m. No problem; I just used :s instead to get the desired effect. (I didn't bother to use :r for ratcheting because it makes no difference for this pattern/input.)
To round out this dive into the difference between classic regexes (which can also be written regex { ... }) and rule rules, let me mention the other main option: token. The token declarator implies the :ratchet adverb, but not the :sigspace one. So it also eliminates the pathological backtracking risk of a regex (or / ... /) but, just like a regex, and unlike a rule, a token ignores whitespace used by a dev in writing out the rule's pattern.
my \articles = input .match: pattern, :global
This line uses the method form (.match) of the m routine used in the one-liner solution.
The result of a match when :global is used is a list of Match objects rather than just one. In this case we'll get three, corresponding to the three articles in the input file.
for articles -> $/ { put "$0: $1\n" }
This for statement successively binds a Match object corresponding to each of the three articles in your sample file to the symbol $/ inside the code block ({ ... }).
Per Raku doc on $/, "$/ is the match variable, so it usually contains objects of type Match.". It also provides some other conveniences; we take advantage of one of these conveniences related to numbered captures:
The pattern that was matched earlier contained two pairs of parentheses;
The overall Match object ($/) provides access to these two Positional captures via Positional subscripting (postfix []), so within the for's block, $/[0] and $/[1] provide access to the two Positional captures for each article;
Raku aliases $0 to $/[0] (and so on) for convenience, so most devs use the shorter syntax.
Interlude
This would be a good time to take a break. Maybe just a cuppa, or return here another day.
The last part of this answer builds up and thoroughly explains a grammar-based approach. Reading it may provide further insight into the solutions above and will show how to extend Raku's parsing to more complex scenarios.
But first...
A "boring" practical approach
I want to parse this with Raku. Can anyone help?
Raku may make writing parsers less tedious than with other tools. But less tedious is still tedious. And Raku parsing is currently slow.
In most cases, the practical answer when you want to parse well known formats and/or really big files is to find and use an existing parser. This might mean not using Raku at all, or using an existing Raku module, or using an existing non-Raku parser in Raku.
A suggested starting point is to search for the file format on modules.raku.org or raku.land. Look for a publicly shared parsing module already specifically packaged for Raku for the given file format. Then do some simple testing to see if you have a good solution.
At the time of writing there are no matches for 'bib'.
Even if you don't know C, there's almost certainly a 'bib' parsing C library already available that you can use. And it's likely to be the fastest solution. It's typically surprisingly easy to use an external library in your own Raku code, even if it's written in another programming language.
Using C libs is done using a feature called NativeCall. The doc I just linked may well be too much or too little, but please feel free to visit the freenode IRC channel #raku and ask for help. (Or post an SO question.) We're friendly folk. :)
If a C lib isn't right for a particular use case, then you can probably still use packages written in some other language such as Perl, Python, Ruby, Lua, etc. via their respective Inline::* language adapters.
The steps are:
Install a package (that's written in Perl, Python or whatever);
Make sure it runs on your system using a compiler of the language it's written for;
Install the appropriate Inline language adapter that lets Raku run packages in that other language;
Use the "foreign" package as if it were a Raku package containing exported Raku functions, classes, objects, values, etc.
(At least, that's the theory. Again, if you need help, please pop on the IRC channel or post an SO question.)
The Perl adapter is the most mature so I'll use that as an example. Let's say you use Perl's Text::BibTex packages and now wish to use Raku with that package. First, setup it up as it's supposed to be per its README. Then, in Raku, write something like:
use Text::BibTeX::BibFormat:from<Perl5>;
...
#blocks = $entry.format;
Explanation of these two lines:
The first line is how you tell Raku that you wish to load a Perl module.
(It won't work unless Inline::Perl5 is already installed and working. But it should be if you're using a popular Raku bundle. And if not, you should at least have the module installer zef so you can run zef install Inline::Perl5.)
The last line is just a mechanical Raku translation of the #blocks = $entry->format; line from the SYNOPSIS of the Perl package Text::BibTeX::BibFormat.
A Raku grammar / parser
OK. Enough "boring" practical advice. Let's now try have some fun creating a grammar based Raku parser good enough for the example from your question.
► use glot.io to run the code below
unit grammar bib;
rule TOP { <article>* }
rule article { '#article{' $<id>=<-[,]>+ ','
<kv-pairs>
'}'
}
rule kv-pairs { <kv-pair>* % ',' }
rule kv-pair { $<key>=\w* '={' ~ '}' $<value>=<-[}]>* }
With this grammar in place, we can now write something like:
die "Use CommaIDE?" unless bib .parsefile: 'derm.bib';
for $<article> -> $/ { put "$<id>: $<kv-pairs><kv-pair>[0]<value>\n" }
to generate exactly the same output as the previous solutions.
When a match or parse fails, by default Raku just returns Nil, which is, well, rather terse feedback.
There are several nice debugging options to figure out what's going on with a regex or grammar, but the best option by far is to use CommaIDE's Grammar-Live-View.
If you haven't already installed and used Comma, you're missing one of the best parts of using Raku. The features built in to the free version of Comma ("Community Edition") include outstanding grammar development / tracing / debugging tools.
Explanation of the 'bib' grammar
unit grammar bib;
The unit declarator is used at the start of a source file to tell Raku that the rest of the file declares a named package of code of a particular type.
The grammar keyword specifies a grammar. A grammar is like a class, but contains named "rules" -- not just named methods, but also named regexs, tokens, and rules. A grammar also inherits a bunch of general purpose rules from a base grammar.
rule TOP {
Unless you specify otherwise, parsing methods (.parse and .parsefile) that are called on a grammar start by calling the grammar's rule named TOP (declared with a rule, token, regex, or method declarator).
As a, er, rule of thumb, if you don't know if you should be using a rule, regex, token, or method for some bit of parsing, use a token. (Unlike regex patterns, tokens don't risk pathological backtracking.)
But I've used a rule. Like token patterns, rules also avoid the pathological backtracking risk. But, in addition rules interpret some whitespace in the pattern to be significant, in a natural manner. (See this SO answer for precise details.)
rules are typically appropriate towards the top of the parse tree. (Tokens are typically appropriate towards the leaves.)
rule TOP { <article>* }
The space at the end of the rule (between the * and pattern closing }) means the grammar will match any amount of whitespace at the end of the input.
<article> invokes another named rule in this grammar.
Because it looks like one should allow for any number of articles per bib file, I added a * (zero or more quantifier) at the end of <article>*.
rule article { '#article{' $<id>=<-[,]>+ ','
<kv-pairs>
'}'
}
If you compare this article pattern with the ones I wrote for the earlier Raku rules based solutions, you'll see various changes:
Rule in original one-liner
Rule in this grammar
Kept pattern as simple as possible.
Introduced <kv-pairs> and closing }
No attempt to echo layout of your input.
Visually echoes your input.
<[...]> is the Raku syntax for a character class, like[...] in traditional regex syntax. It's more powerful, but for now all you need to know is that the - in <-[,]> indicates negation, i.e. the same as the ^ in the [^,] syntax of ye olde regex. So <-[,]>+ attempts a match of one or more characters, none of which are ,.
$<id>=<-[,]>+ tells Raku to attempt to match the quantified "atom" on the right of the = (i.e. the <-[,]>+ bit) and store the results at the key <id> within the current match object. The latter will be hung from a branch of the parse tree; we'll get to precisely where later.
rule kv-pairs { <kv-pair>* % ',' }
This pattern illustrates one of several convenient Raku regex features. It declares you want to match zero or more kv-pairs separated by commas.
(In more detail, the % regex infix operator requires that matches of the quantified atom on its left are separated by the atom on its right.)
rule kv-pair { $<key>=\w* '={' ~ '}' $<value>=<-[}]>* }
The new bit here is '={' ~ '}'. This is another convenient regex feature. The regex Tilde operator parses a delimited structure (in this case one with a ={ opener and } closer) with the bit between the delimiters matching the quantified regex atom on the right of the closer. This confers several benefits but the main one is that error messages can be clearer.
I could have used the ~ approach in the /.../ regex in the one-liner, and vice-versa. But I wanted this grammar solution to continue the progression toward illustrating "better practice" idioms.
Constructing / deconstructing the parse tree
for $<article> { put "$<id>: $<kv-pairs><kv-pair>[0]<value>\n" }`
$<article>, $<id> etc. refer to named match objects that are stored somewhere in the "parse tree". But how did they get there? And exactly where is "there"?
Returning to the top of the grammar:
rule TOP {
If a .parse is successful, a single 'TOP' level match object is returned. (After a parse is complete the variable $/ is also bound to that top match object.) During parsing a tree will have been formed by hanging other match objects off this top match object, and then others hung off those, and so on.
Addition of match objects to a parse tree is done by adding either a single generated match object, or a list of them, to either a Positional (numbered) or Associative (named) capture of a "parent" match object. This process is explained below.
rule TOP { <article>* }
<article> invokes a match of the rule named article. An invocation of the rule <article> has two effects:
Raku tries to match the rule.
If it matches, Raku captures that match by generating a corresponding match object and adding it to the parse tree under the key <article> of the parent match object. (In this case the parent is the top match object.)
If the successfully matched pattern had been specified as just <article>, rather than as <article>*, then only one match would have been attempted, and only one value, a single match object, would have been generated and added under the key <article>.
But the pattern was <article>*, not merely <article>. So Raku attempts to match the article rule as many times as it can. If it matches at all, then a list of one or more match objects is stored as the value of the <article> key. (See my answer to "How do I access the captures within a match?" for a more detailed explanation.)
$<article> is short for $/<article>. It refers to the value stored under the <article> key of the current match object (which is stored in $/). In this case that value is a list of 3 match objects corresponding to the 3 articles in the input.
rule article { '#article{' $<id>=<-[,]>+ ','
Just as the top match object has several match objects hung off of it (the three captures of article matches that are stored under the top match object's <article> key), so too do each of those three article match objects have their own "child" match objects hanging off of them.
To see how that works, let's consider just the first of the three article match objects, the one corresponding to the text that starts "#article{garg2017patch,...". The article rule matches this article. As it's doing that matching, the $<id>=<-[,]>+ part tells Raku to store the match object corresponding to the id part of the article ("garg2017patch") under that article match object's <id> key.
Hopefully this is enough (quite possibly way too much!) and I can at last exhaustively (exhaustingly?) explain the last line of code, which, once again, was:
for $<article> -> $/ { put "$<id>: $<kv-pairs><kv-pair>[0]<value>\n" }`
At the level of the for, the variable $/ refers to the top of the parse tree generated by the parse that just completed. Thus $<article>, which is shorthand for $/<article>, refers to the list of three article match objects.
The for then iterates over that list, binding $/ within the lexical scope of the -> $/ { ... } block to each of those 3 article match objects in turn.
The $<id> bit is shorthand for $/<id>, which inside the block refers to the <id> key within the article match object that $/ has been bound to. In other words, $<id> inside the block is equivalent to $<article><id> outside the block.
The $<kv-pairs><kv-pair>[0]<value> follows the same scheme, albeit with more levels and a positional child (the [0]) in the midst of all the key (named/ associative) children.
(Note that there was no need for the article pattern to include a $<kv-pairs>=<kv-pairs> because Raku just presumes a pattern of the form <foo> should store its results under the key <foo>. If you wish to disable that, write a pattern with a non-alpha character as the first symbol. For example, use <.foo> if you want to have exactly the same matching effect as <foo> but just not store the matched input in the parse tree.)
Phew!
When the automatically generated parse tree isn't what you want
As if all the above were not enough, I need to mention one more thing.
The parse tree strongly reflects the tree structure of the grammar's rules calling one another from the top rule down to leaf rules. But the resulting structure is sometimes inconvenient.
Often one still wants a tree, but a simpler one, or perhaps some non-tree data structure.
The primary mechanism for generating exactly what you want from a parse, when the automatic results aren't suitable, is make. (This can be used in code blocks inside rules or factored out into Action classes that are separate from grammars.)
In turn, the primary use case for make is to generate a sparse tree of nodes hanging off the parse tree, such as an AST.
Footnotes
[1] Basic Raku is good for exploratory programming, spikes, one-offs, PoCs and other scenarios where the emphasis is on quickly producing working code that can be refactored later if need be.
[2] Raku's regexes/rules scale up to arbitrary parsing, as introduced in the latter half of this answer. This contrasts with past generations of regex which could not.[3]
[3] That said, ZA̡͊͠͝LGΌ ISͮ̂҉̯͈͕̹̘̱ TO͇̹̺ͅƝ̴ȳ̳ TH̘Ë͖́̉ ͠P̯͍̭O̚​N̐Y̡ remains a great and relevant read. Not because Raku rules can't parse (X)HTML. In principle they can. But for a task as monumental as correctly handling full arbitrary in-the-wild XHTML I would strongly recommend you use an existing parser written expressly for that purpose. And this applies generally for existing formats; it's best not to reinvent the wheel. But the good news with Raku rules is that if you need to write a full parser, not just a bunch of regexes, you can do so, and it need not involve going insane!

building a lexer with very many tokens

I've been searching for two hours now And I don't really know what to do.
I'm trying to build a analyser which use a lexer that can match several thousand words. Those are natural language words, that's why they are so many.
I tried first in a simple way with just 1000 differents matches for one token :
TOKEN :
{
<VIRG: ",">
| <COORD: "et">
| <ADVERBE: "vraiment">
| <DET: "la">
| <ADJECTIF: "bonne">
| <NOM: "pomme"
| "émails"
| "émaux"
| "APL"
| "APLs"
| "Acide"
| "Acides"
| "Inuk"
[...]
After javac compilation it returns that the code is too large.
So, how could I manage thousands tokens in my lexer ?
I've read that it is more efficient to use n tokens for each word, than using one token for n words. But in this case I will have rules with 1000+ tokens, which doesn't look like a better idea;
I could modify the token manager, or build one, so it just matchs words in a list;
Here I know that the lexer is a finite state machine, and this is why it's not possible, so is there anyway to use an other lexer ? ;
I could automatically generate a huge regular expression which match every word, but that wouldn't let me handle the words independantly afterwards, and I'm not sure that writing a 60-lines-regular-expression would be a great idea;
Maybe is there a way to load the token from a file, this solution is pretty close to solutions 2 and 3;
Maybe I should use another language ? I'm trying to migrate from XLE (which can handle a lexicon of more than 70 000 tokens) to java, and what is interesting here is to generate java files !
So here it is, I can find my way to handle several thousands tokens with a javacc lexer. That would be great if any one is use to that and have an idea ?
Best
Corentin
I don't know how javacc builds its DFA, but it's certain that a DFA capable of distinguishing thousands of words would be quite large. (But by no means unreasonably large: I've gotten flex to build DFAs with hundreds of thousands of states without major problems.)
The usual approach to lexicons with a huge number of fixed lexemes is to use the DFA to recognize a potential word (eg., a sequence of alphabetical characters) and then look the word up in a dictionary to get the token type. That's also more flexible because you can update the dictionary without recompiling.

What is parsing? (And differences from search and grep?

What exactly is parsing? I mean, generally. How different is parsing different from searching? On command line, if I use the grep tool/command; is that parsing?
For example, if I have just one string:
"Hello world! How are you doing today?"
and I tried to search (using grep or any other tool) whether the word "you" is within that string; is that parsing?
What if I do a web search; for example in Google? Is that parsing?
Or is parsing the name of the process that is a part of the process known as "Search"?
The verb "parse" is essentially related to the word "part", as in "part of speech". (See, for example, the on-line etymology dictionary.)
To "parse" a sentence has traditionally meant to break the sentence down into its component parts and identify their relationship with each other. For example, given "I asked a question.", we can parse it into a subject ("I"), a transitive verb in past tense ("asked"), and an object phrase consisting of an article ("a") and a noun ("question"). The parse indicates that the subject performed some action on the object; this is not the same statement as *"A question asked I", and not just because the latter is ungrammatical.
With the advent of computer languages and computational theory, the term "parsing" has been generalized to include analysis of strings which are not human languages. Some people would even use it to simply mean "to divide a string into its component parts", such as "parsing" a line in a CSV file into fields.
It's quite a stretch to apply that to merely searching for a string inside another string, although there may be contexts in which that is an acceptable use of the word. Personally, I would only use it for the action of completely deconstructing a structured string.

How to create a Recipe / Ingredient parser

Given a line such as
1 pound of Beef
I want to extract the ingredient. Initially im only interested in the ingredient name.
Ive looked at rubys famous time parser Chronic and like its use of regexs.
def self.scan_for_month_names(token)
scanner = {/^jan\.?(uary)?$/ => :january,
/^feb\.?(ruary)?$/ => :february,
/^mar\.?(ch)?$/ => :march,
/^apr\.?(il)?$/ => :april,
/^may$/ => :may,
/^jun\.?e?$/ => :june,
/^jul\.?y?$/ => :july,
/^aug\.?(ust)?$/ => :august,
/^sep\.?(tember)?$/ => :september,
/^oct\.?(ober)?$/ => :october,
/^nov\.?(ember)?$/ => :november,
/^dec\.?(ember)?$/ => :december}
scanner.keys.each do |scanner_item|
return Chronic::RepeaterMonthName.new(scanner[scanner_item]) if scanner_item =~ token.word
end
return nil
end
However in my case Id probably have to create over 300 regexs for each individual ingredient.
I'd also have to take into account of synonyms such as Cilantro & Corriander Leaf
Ive never done parsing before but is the use of regexs here still the best way to go. I cant think of any other reasonable alternative.
Firstly, I'm assuming that the ingredients don't always take the form of QUANTITY UNIT of INGREDIENT - otherwise, this would be a very trivial task (just copy the substring after of
This is a difficult problem - the solution will not be simple.
I think using regex may not be the best approach here:
As you mention, you'll have to write a lot of expressions for each
ingredient
Your list of possible ingredients will always be limited
by the regex list, and you can't detect new ingredients without
compiling more.
it will be very difficult to parse some ingredients(cheese, 1 pound (parmesan))
I think that natural language processing is the way to go here. You have unstructured input, but in a very restricted context.
Perhaps counter-intuitively, I think the best way to find the ingredient may very well be to not look for it - look for everything else instead. If you assume that a line will always have
a numeral (quantity)
a unit (pounds, teaspoons, etc)
a ingredient
and that it's pretty easy to detect numerals and units, it should be straightforward to recognize those first and then extract the ingredient.
If you use a part-of-speech tagger, it's easy to identify relevant words:
[('1', 'LS'), ('pound', 'NN'), ('of', 'IN'), ('Beef', 'NNP')]
From there, you may want to use a classifier. For that, you'll need to label the ingredients manually on a good quantity of lines (say, hundreds). Some possibly good features to use:
position of the word in the line
presence in a precomputed ingredient dictionary (possibly using some partial string matching metric like Levenshtein's
output of part-of-speech tagger
words immediately before and after (if you have an 'of' before the word, there's a high probability it's a ingredient
I'm sure you'll be able to find countless others after working on a few lines.
Finally, I expect that some lines will be very difficult to work on. 1 pound of parmesan cheese, 1 pound of emmentaler: you'd have to infer that the second ingredient is a cheese, too.
As to software, if you can choose the language to use, python has the fantastic Natural Language Toolkit. I can't vouch for toolkits in other languages, but maybe someone else will.
I think I would start by running a series of regex checks against each line, and adjust the parsed text as you go. For example (pseudocode):
First, check for instruction:
/^(add|fold in|stir in|etc...)/
If you found an instruction, remove it from the line, set a flag, and continue:
instruction = $1
this_line = this_line.substring(instruction.length())
If an instruction was found, check to see if there was a subsequent instruction (like "and cover" or "and set aside")
/\b(and\s)(.*)$/
If found, strip that and insert it before the next line of the recipe
instruction = instruction.substring(0, instuction.length - $1.length - $2.length)
splice $2 into the array of lines immediately following this one
Next, maybe you'll check for a preposition:
/((?in)to\s(.+)/
If found, you might use that to check for equipment names, bowls, measuring cups, etc.
Even if you don't use it, you can probably remove it from the string you're parsing, to improve your matching.
Finally, the real work is done with the text that's left:
Check against /^(\d+\s+(?a\s)?\w+)\s*(?of\s*)?(.+)$/
Which should give you $1 containing the unit of measure and $2 containing the ingredient.
Lather. Rinse. Repeat.
After that, do whatever magic your app does with this information.
First of all, I suggest doing some searching to see if someone else has already created a solution to this problem which is good enough for you to use, rather than reinventing the wheel.
For instance, you may find this project to be interesting. It uses machine learning to attempt to parse ingredient phrases, including type of ingredients and amounts.
Other interesting projects also come up when googling for "ingredient parser".
If you are really determined to write this yourself, then I suggest that you do some research into the category of software tools known as a "parser generator", which is a tool which will allow you to write the language you want to recognize in an abstract form (a "grammar"), and then will generate code in your language of choice which will parse text according to that grammar and will identify specific subconstructs within it it very efficiently (much more efficiently than could be done by hundreds of regular expression matches).
For instance, a grammar used as input to a parser generator might look something like this:
// I am making up the following syntax for demonstration purposes, but it illustrates the
// sort of things that one could specify in a grammar, and is not terribly different from
// the grammar languages that real parser generators use.
//
// Note that everything in the curly braces is code to be inserted into the generated parser.
// Each such code block will be invoked when the preceding parsing rule is matched.
%declare { bool organic=false; bool dried=false; bool smoked=false; }
INGREDIENT ::= "organic" INGREDIENT { organic=true; }
| INGREDIENT "(" "organic" ")" { organic=true; }
| "dried" INGREDIENT { dried=true; }
| "smoked" INGREDIENT { smoked=true; }
| AMOUNT "of" INGREDIENT
| INGREDIENT "(" AMOUNT ")"
| BASE_INGREDIENT
BASE_INGREDIENT ::= ( WORD )* {
doSomethingWithBaseIngredient(organic, dried, smoked, $BASE_INGREDIENT);
}
AMOUNT ::= NUMBER ( VOLUME_UNIT | WEIGHT_UNIT )
VOLUME_UNIT ::= "cup" | "liter"
WEIGHT_UNIT ::= "mg" | "kg" | "pound"
NUMBER ::= [0-9]+
WORD ::= [a-zA-Z]+
... and so forth.
The parser generator, when run, would take this grammar as input, and would generate code in your desired programming language as output. This code would parse input text according to the grammar and would also set variables and/or call functions of yours as desired when certain parsing rules are matched. The parsers generated by such tools often use special parsing techniques (often involving large tables, state machines, and so forth) to parse very efficiently in a single pass without having to do any more work than necessary, and avoiding backtracking when possible.
Some common examples of parser generators are lexx/yacc, bison, and Antlr. Many others exist. (Personally, I have gotten good results with Antlr in the past, and am particularly fond of the fact that it can generate parsers in many different programming languages.) Many of these parser generators are mostly intended for use by compiler writers, but that does not mean that they can't be used for other purposes, such as recognizing the various forms that ingredients in recipes take.
This article provides an overview of parser generators, and this article contains a table of various parser generators and their attributes (output languages, etc.) as well as links on where to find more.

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