ML serving service architecture with Docker - docker

I am in the early stage of developing an image segmentation service. Currently, I have a simple Flask server that is responsible for receiving data and running a docker container with an AI model in the local GPU server. But I also think about something asynchronous like FastAPI or Nodejs to implement some scheduler for prediction tasks. What is better: a) when the server calls the docker container by ssh and the docker container run only when it is called, predicted images, saved results, and stopped, or b) running an API server inside the AI container? Each container is around 5-10GB. Running all containers looks more expensive, but I am not sure what practice is better.
I tried to call the container each time and stop it after work was done.

You should avoid approaches based on dynamically starting containers and approaches based on ssh. I'd recommend a long-running process that accepts some network input, like your existing Flask server, and either always has the ML model running or launches it as a subprocess.
If you can use a subprocess that could be a good match here. When the subprocess exits, all of its memory resources will be automatically cleaned up, so you won't have the cost of the subprocess when it's not being used. If the container happens to exit, the subprocess will get cleaned up with it. Subprocesses are also basic Unix functionality, so you can locally develop your service without needing any particular complex setup.
Dynamically launching containers comes with many challenges. It ties your application to the Docker API, which will make it harder to run, even in local development. Using that API grants unrestricted root-level access to the host system (you can very easily run a container that compromises the host). You need to remember to clean up after your own containers. The setup may not work in other container systems like Kubernetes that don't make a Docker socket available.
An ssh-based system presents different complexities. You need to distribute credentials to various places. If you're trying to run an ssh daemon inside a Docker container, that is difficult to configure securely (what creates the host keys? how do you provision users and private keys?). You also need to think about various failure cases around the ssh transport that might not be present in a purely-local system.

Related

Periodic cron-like Functions Across Containers in a Docker Project

I have implemented the LAMP stack for a 3rd party forum application on its own dedicated virtual server. One of my aims here was to use a composed docker project (under Git) to encapsulate the application fully. I wanted to keep this as simple to understand as possible for the other sysAdmins supporting the forum, so this really ruled out using S6 etc., and this in turn meant that I had to stick to the standard of one container per daemon service using the docker runtime to do implement the daemon functionality.
I had one particular design challenge that doesn't seem to be addressed cleanly through the Docker runtime system, and that is I need to run periodic housekeeping activities that need to interact across various docker containers, for example:
The forum application requires a per-minute PHP housekeeping task to be run using php-cli, and I only have php-cli and php-fpm (which runs as the foreground deamon process) installed in the php container.
Letsencrypt certificate renewal need a weekly certbot script to be run in the apache container's file hierarchy.
I use conventional /var/log based logging for high-volume Apache access logs as these generate Gb access files that I want to retain for ~7 days in the event of needing to do hack analysis, but that are otherwise ignored.
Yes I could use the hosts crontab to run docker exec commands but this involves exposing application internals to the host system and IMO this is breaking one of my design rules. What follows is my approach to address this. My Q is really to ask for comments and better alternative approaches, and if not then this can perhaps serve as a template for others searching for an approach to this challenge.
All of my containers contain two special to container scripts: docker-entrypoint.sh which is a well documented convention; docker-service-callback.sh which is the action mechanism to implement the tasking system.
I have one application agnostic host service systemctl: docker-callback-reader.service which uses this bash script, docker-callback-reader. This services requests on a /run pipe that is volume-mapped into any container that need to request such event processes.
In practice I have only one such housekeeping container see here that implements Alpine crond and runs all of the cron-based events. So for example the following entry does the per-minute PHP tasking call:
- * * * * echo ${VHOST} php task >/run/host-callback.pipe
In this case the env variable VHOST identifies the relevant docker stack, as I can have multiple instances (forum and test) running on the server; the next parameter (php in this case) identifies the destination service container; the final parameter (task) plus any optional parameters are passed as arguments to a docker exec of php containers docker-service-callback.sh and magic happens as required.
I feel that the strengths of the system are that:
Everything is suitably encapsulated. The host knows nothing of the internals of the app other than any receiving container must have a docker-service-callback.sh on its execution path. The details of each request are implemented internally in the executing container, and are hidden from the tasking container.
The whole implementation is simple, robust and has minimal overhead.
Anyone is free to browse my Git repo and cherry-pick whatever of this they wish.
Comments?

Architectural question about user-controlled Docker instances

I got a website in Laravel where you can click on a button which sends a message to a Python daemon which is isolated in Docker. This works for an easy MVP to prove a concept, but it's not viable in production because a user would most likely want to pause, resume and stop that process as well because that service is designed to never stop otherwise considering it's a scanner which is looped.
I have thought about a couple of solutions for this, such as fixing it in the software layer but that would add complexity to the program. I have googled Docker and I have found that it is actually possible to do what I want to do with Docker itself with the commands pause, unpause, run and kill.
It would be optimal if I had a service which would interact with the Docker instances with the criteria of above and would be able to take commands from HTTP. Is Docker Swarm the right solution for this problem or is there an easier way?
There are both significant security and complexity concerns to using Docker this way and I would not recommend it.
The core rule of Docker security has always been, if you can run any docker command, then you can easily take over the entire host. (You cannot prevent someone from docker run a container, as container-root, bind-mounting any part of the host filesystem; so they can reset host-root's password in the /etc/shadow file to something they know, allow remote-root ssh access, and reboot the host, as one example.) I'd be extremely careful about connecting this ability to my web tier. Strongly coupling your application to Docker will also make it more difficult to develop and test.
Instead of launching a process per crawling job, a better approach might be to set up some sort of job queue (perhaps RabbitMQ), and have a multi-user worker that pulls jobs from the queue to do work. You could have a queue per user, and a separate control queue that receives the stop/start/cancel messages.
If you do this:
You can run your whole application without needing Docker: you need the front-end, the message queue system, and a worker, but these can all run on your local development system
If you need more crawlers, you can launch more workers (works well with Kubernetes deployments)
If you're generating too many crawl requests, you can launch fewer workers
If a worker dies unexpectedly, you can just restart it, and its jobs will still be in the queue
Nothing needs to keep track of which process or container belongs to a specific end user

Can you run a sandbox container within a Cloud Run container?

Let's say I would to let the user upload some python or bash script, execute it in the cloud run and get the result back. To do this I would create a Cloud Run service with a service account that has no permissions to access project resources. I would as well run the script within the nested container so the user cannot interfere with the server code and manipulate consecutive requests from other users.
How would I make gvisor runsc or some other sandbox runtime available within the container running on Cloud Run?
I found some resources mentioning using the privileged flag on the original container, but that is not possible with Cloud Run. Also, I cannot find any information on how to run rootless containers with runsc. Let me know if I am on the right track or if this is even possible with cloud run or should I use another service?
Thank you.
Currently Cloud Run (fully managed) itself runs on a gVisor sandbox itself, so its support for low-level Linux APIs for creating further container environments using cgroups or Linux namespace APIs are probably not going to be possible.
However, since gVisor is technically an user-space sandboxing technology (though I'm not sure what level of privileges it requires), you might be able to run a gVisor sandbox inside gVisor, though I would not hold my hopes high as it's probably not designed for that. I'm guessing that gVisor sandbox does not provide ptrace capabilities for nested sandboxes to work, though you can probably ask this on gVisor’s own GitHub repository.
For a use case like this, I recommend checking out Cloud Run for Anthos on GKE, it's a similar developer experience to Cloud Run, but runs your applications on GKE nodes (which are GCE VMs) which have full Linux system call suite available to them. Since Kubernetes podspec is available there, you can actually create privileged containers, and run VMs inside them etc.
Usually containers themselves are supposed to be the sandbox, so attempting to create further sandboxes (like you asked earlier) is going to be a lot of platform-dependent work, even if you can get it running somehow.

Best Practices for Cron on Docker

I've transitioned to using docker with cron for some time but I'm not sure my setup is optimal. I have one cron container that runs about 12 different scripts. I can edit the schedule of the scripts but in order to deploy a new version of the software running (some scripts which run for about 1/2 day) I have to create a new container to run some of the scripts while others finish.
I'm considering either running one container per script (the containers will share everything in the image but the crontab). But this will still make it hard to coordinate updates to multiple containers sharing some of the same code.
The other alternative I'm considering is running cron on the host machine and each command would be a docker run command. Doing this would let me update the next run image by using an environment variable in the crontab.
Does anybody have any experience with either of these two solutions? Are there any other solutions that could help?
If you are just running docker standalone (single host) and need to run a bunch of cron jobs without thinking too much about their impact on the host, then making it simple running them on the host works just fine.
It would make sense to run them in docker if you benefit from docker features like limiting memory and cpu usage (so they don't do anything disruptive). If you also use a log driver that writes container logs to some external logging service so you can easily monitor the jobs.. then that's another good reason to do it. The last (but obvious) advantage is that deploying new software using a docker image instead of messing around on the host is often a winner.
It's a lot cleaner to make one single image containing all the code you need. Then you trigger docker run commands from the host's cron daemon and override the command/entrypoint. The container will then die and delete itself after the job is done (you might need to capture the container output to logs on the host depending on what logging driver is configured). Try not to send in config values or parameters you change often so you keep your cron setup as static as possible. It can get messy if a new image also means you have to edit your cron data on the host.
When you use docker run like this you don't have to worry when updating images while jobs are running. Just make sure you tag them with for example latest so that the next job will use the new image.
Having 12 containers running in the background with their own cron daemon also wastes some memory, but the worst part is that cron doesn't use the environment variables from the parent process, so if you are injecting config with env vars you'll have to hack around that mess (write them do disk when the container starts and such).
If you worry about jobs running parallel there are tons of task scheduling services out there you can use, but that might be overkill for a single docker standalone host.

Docker, what is it and what is the purpose

I've heard about Docker some days ago and wanted to go across.
But in fact, I don't know what is the purpose of this "container"?
What is a container?
Can it replace a virtual machine dedicated to development?
What is the purpose, in simple words, of using Docker in companies? The main advantage?
VM: Using virtual machine (VM) software, for example, Ubuntu can be installed inside a Windows. And they would both run at the same time. It is like building a PC, with its core components like CPU, RAM, Disks, Network Cards etc, within an operating system and assemble them to work as if it was a real PC. This way, the virtual PC becomes a "guest" inside an actual PC which with its operating system, which is called a host.
Container: It's same as above but instead of using an entire operating system, it cut down the "unnecessary" components of the virtual OS to create a minimal version of it. This lead to the creation of LXC (Linux Containers). It therefore should be faster and more efficient than VMs.
Docker: A docker container, unlike a virtual machine and container, does not require or include a separate operating system. Instead, it relies on the Linux kernel's functionality and uses resource isolation.
Purpose of Docker: Its primary focus is to automate the deployment of applications inside software containers and the automation of operating system level virtualization on Linux. It's more lightweight than standard Containers and boots up in seconds.
(Notice that there's no Guest OS required in case of Docker)
[ Note, this answer focuses on Linux containers and may not fully apply to other operating systems. ]
What is a container ?
It's an App: A container is a way to run applications that are isolated from each other. Rather than virtualizing the hardware to run multiple operating systems, containers rely on virtualizing the operating system to run multiple applications. This means you can run more containers on the same hardware than VMs because you only have one copy of the OS running, and you do not need to preallocate the memory and CPU cores for each instance of your app. Just like any other app, when a container needs the CPU or Memory, it allocates them, and then frees them up when done, allowing other apps to use those same limited resources later.
They leverage kernel namespaces: Each container by default will receive an environment where the following are namespaced:
Mount: filesystems, / in the container will be different from / on the host.
PID: process id's, pid 1 in the container is your launched application, this pid will be different when viewed from the host.
Network: containers run with their own loopback interface (127.0.0.1) and a private IP by default. Docker uses technologies like Linux bridge networks to connect multiple containers together in their own private lan.
IPC: interprocess communication
UTS: this includes the hostname
User: you can optionally shift all the user id's to be offset from that of the host
Each of these namespaces also prevent a container from seeing things like the filesystem or processes on the host, or in other containers, unless you explicitly remove that isolation.
And other linux security tools: Containers also utilize other security features like SELinux, AppArmor, Capabilities, and Seccomp to limit users inside the container, including the root user, from being able to escape the container or negatively impact the host.
Package your apps with their dependencies for portability: Packaging an application into a container involves assembling not only the application itself, but all dependencies needed to run that application, into a portable image. This image is the base filesystem used to create a container. Because we are only isolating the application, this filesystem does not include the kernel and other OS utilities needed to virtualize an entire operating system. Therefore, an image for a container should be significantly smaller than an image for an equivalent virtual machine, making it faster to deploy to nodes across the network. As a result, containers have become a popular option for deploying applications into the cloud and remote data centers.
Can it replace a virtual machine dedicated to development ?
It depends: If your development environment is running Linux, and you either do not need access to hardware devices, or it is acceptable to have direct access to the physical hardware, then you'll find a migration to a Linux container fairly straight forward. The ideal target for a docker container are applications like web based API's (e.g. a REST app), which you access via the network.
What is the purpose, in simple words, of using Docker in companies ? The main advantage ?
Dev or Ops: Docker is typically brought into an environment in one of two paths. Developers looking for a way to more rapidly develop and locally test their application, and operations looking to run more workload on less hardware than would be possible with virtual machines.
Or Devops: One of the ideal targets is to leverage Docker immediately from the CI/CD deployment tool, compiling the application and immediately building an image that is deployed to development, CI, prod, etc. Containers often reduce the time to move the application from the code check-in until it's available for testing, making developers more efficient. And when designed properly, the same image that was tested and approved by the developers and CI tools can be deployed in production. Since that image includes all the application dependencies, the risk of something breaking in production that worked in development are significantly reduced.
Scalability: One last key benefit of containers that I'll mention is that they are designed for horizontal scalability in mind. When you have stateless apps under heavy load, containers are much easier and faster to scale out due to their smaller image size and reduced overhead. For this reason you see containers being used by many of the larger web based companies, like Google and Netflix.
Same questions were hitting my head some days ago and what i found after getting into it, let's understand in very simple words.
Why one would think about docker and containers when everything seems fine with current process of application architecture and development !!
Let's take an example that we are developing an application using nodeJs , MongoDB, Redis, RabbitMQ etc services [you can think of any other services].
Now we face these following things as problems in application development and shipping process if we forget about existence of docker or other alternatives of containerizing applications.
Compatibility of services(nodeJs, mongoDB, Redis, RabbitMQ etc.) with OS(even after finding compatible versions with OS, if something unexpected happens related to versions then we need to relook the compatibility again and fix that).
If two system components requires a library/dependency with different versions in application in OS(That need a relook every time in case of an unexpected behaviour of application due to library and dependency version issue).
Most importantly , If new person joins the team, we find it very difficult to setup the new environment, person has to follow large set of instructions and run hundreds of commands to finally setup the environment And it takes time and effort.
People have to make sure that they are using right version of OS and check compatibilities of services with OS.And each developer has to follow this each time while setting up.
We also have different environment like dev, test and production.If One developer is comfortable using one OS and other is comfortable with other OS And in this case, we can't guarantee that our application will behave in same way in these two different situations.
All of these make our life difficult in process of developing , testing and shipping the applications.
So we need something which handles compatibility issue and allows us to make changes and modifications in any system component without affecting other components.
Now we think about docker because it's purpose is to
containerise the applications and automate the deployment of applications and ship them very easily.
How docker solves above issues-
We can run each service component(nodeJs, MongoDB, Redis, RabbitMQ) in different containers with its own dependencies and libraries in the same OS but with different environments.
We have to just run docker configuration once then all our team developers can get started with simple docker run command, we have saved lot of time and efforts here:).
So containers are isolated environments with all dependencies and
libraries bundled together with their own process and networking
interfaces and mounts.
All containers use the same OS resources
therefore they take less time to boot up and utilise the CPU
efficiently with less hardware costs.
I hope this would be helpful.
Why use docker:
Docker makes it really easy to install and running software without worrying about setup or dependencies. Docker is really made it easy and really straight forward for you to install and run software on any given computer not just your computer but on web servers as well or any cloud based computing platform. For example when I went to install redis in my computer by using bellow command
wget http://download.redis.io/redis-stable.tar.gz
I got error,
Now I could definitely go and troubleshoot this install that program and then try installing redis again, and I kind of get into endless cycle of trying to do all bellow troubleshooting as you I am installing and running software.
Now let me show you how easy it is to run read as if you are making use of Docker instead. just run the command docker run -it redis, this command will install docker without any error.
What docker is:
To understand what is docker you have to know about docker Ecosystem.
Docker client, server, Machine, Images, Hub, Composes are all projects tools pieces of software that come together to form a platform where ecosystem around creating and running something called containers, now if you run the command docker run redis something called docker CLI reached out to something called the Docker Hub and it downloaded a single file called an image.
An image is a single file containing all the dependencies and all the configuration required to run a very specific program, for example redis this which is what the image that you just downloaded was supposed to run.
This is a single file that gets stored on your hard drive and at some point time you can use this image to create something called a container.
A container is an instance of an image and you can kind of think it as being like a running program with it's own isolated set of hardware resources so it kind of has its own little set or its own little space of memory has its own little space of networking technology and its own little space of hard drive space as well.
Now lets examine when you give bellow command:
sudo docker run hello-world
Above command will starts up the docker client or docker CLI, Docker CLI is in charge of taking commands from you kind of doing a little bit of processing on them and then communicating the commands over to something called the docker server, and docker server is in charge of the heavy lifting when we ran the command Docker run hello-world,
That meant that we wanted to start up a new container using the image with the name of hello world, the hello world image has a tiny tittle program inside of it whose sole purpose or sole job is to print out the message that you see in the terminal.
Now when we ran that command and it was issued over to the docker server a series of actions very quickly occurred in background. The Docker server saw that we were trying to start up a new container using an image called hello world.
The first thing that the docker server did was check to see if it already had a local copy like a copy on your personal machine of the hello world image or that hello world file.So the docker server looked into something called the image cache.
Now because you and I just installed Docker on our personal computers that image cache is currently empty, We have no images that have already been downloaded before.
So because the image cache was empty the docker server decided to reach out to a free service called Docker hub. The Docker Hub is a repository of free public images that you can freely download and run on your personal computer. So Docker server reached out to Docker Hub and and downloaded the hello world file and stored it on your computer in the image-cache, where it can now be re-run at some point the future very quickly without having to re-downloading it from the docker hub.
After that the docker server will use it to create an instance of a container, and we know that a container is an instance of an image, its sole purpose is to run one very specific program. So the docker server then essentially took that image file from image cache and loaded it up into memory to created a container out of it and then ran a single program inside of it. And that single programs purpose was to print out the message that you see.
What a container is:
A container is a process or a set of processes that have a grouping of resource specifically assigned to it, in the bellow is a diagram that anytime that we think about a container we've got some running process that sends a system call to a kernel, the kernel is going to look at that incoming system call and direct it to a very specific portion of the hard drive, the RAM, CPU or what ever else it might need and a portion of each of these resources is made available to that singular process.
Let me try to provide as simple answers as possible:
But in fact, I don't know what is the purpose of this "container"?
What is a container?
Simply put: a package containing software. More specifically, an application and all its dependencies bundled together. A regular, non-dockerised application environment is hooked directly to the OS, whereas a Docker container is an OS abstraction layer.
And a container differs from an image in that a container is a runtime instance of an image - similar to how objects are runtime instances of classes in case you're familiar with OOP.
Can it replace a virtual machine dedicated to development?
Both VMs and Docker containers are virtualisation techniques, in that they provide abstraction on top of system infrastructure.
A VM runs a full “guest” operating system with virtual access to host resources through a hypervisor. This means that the VM often provides the environment with more resources than it actually needs In general, VMs provide an environment with more resources than most applications need. Therefore, containers are a lighter-weight technique. The two solve different problems.
What is the purpose, in simple words, of using Docker in companies?
The main advantage?
Containerisation goes hand-in-hand with microservices. The smaller services that make up the larger application are often tested and run in Docker containers. This makes continuous testing easier.
Also, because Docker containers are read-only they enforce a key DevOps principle: production services should remain unaltered
Some general benefits of using them:
Great isolation of services
Great manageability as containers contain everything the app needs
Encapsulation of implementation technology (in the containers)
Efficient resource utilisation (due to light-weight os virtualisation) in comparison to VMs
Fast deployment
If you don't have any prior experience with Docker this answer will cover the basics needed as a developer.
Docker has become a standard tool for DevOps as it is an effective application to improve operational efficiencies. When you look at why Docker was created and why it is very popular, it is mostly for its ability to reduce the amount of time it takes to set up the environments where applications run and are developed.
Just look at how long it takes to set up an environment where you have React as the frontend, a node and express API for backend, which also needs Mongo. And that's just to start. Then when your team grows and you have multiple developers working on the same front and backend and therefore they need to set up the same resources in their local environment for testing purposes, how can you guarantee every developer will run the same environment resources, let alone the same versions? All of these scenarios play well into Docker's strengths where it's value comes from setting containers with specific settings, environments and even versions of resources. Simply type a few commands to have Docker set up, install, and run your resources automatically.
Let's briefly go over the main components. A container is basically where your application or specific resource is located. For example, you could have the Mongo database in one container, then the frontend React application, and finally your node express server in the third container.
Then you have an image, which is from what the container is built. The images contains all the information that a container needs to build a container exactly the same way across any systems. It's like a recipe.
Then you have volumes, which holds the data of your containers. So if your applications are on containers, which are static and unchanging, the data that change is on the volumes.
And finally, the pieces that allow all these items to speak is networking. Yes, that sounds simple, but understand that each container in Docker have no idea of the existence of each container. They're fully isolated. So unless we set up networking in Docker, they won't have any idea how to connect to one and another.
There are really good answers above which I found really helpful.
Below I had drafted a simpler answer:
Reasons to dockerize my web application?
a. One OS for multiple applications ( Resources are shared )
b. Resource manangement ( CPU / RAM) is efficient.
c. Serverless Implementation made easier -Yes, AWS ECS with Fargate, But serverless can be achieved with Lamdba
d. Infra As Code - Agree, but IaC can be achieved via Terraforms
e. "It works in my machine" Issue
Still, below questions are open when choosing dockerization
A simple spring boot application
a. Jar file with size ~50MB
b. creates a Docker Image ~500MB
c. Cant I simply choose a small ec2 instance for my microservices.
Financial Benefits (reducing the individual instance cost) ?
a. No need to pay for individual OS subscription
b. Is there any monetary benefit like the below implementation?
c. let say select t3.2xlarge ( 8 core / 32 GB) and start 4-5 docker images ?

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