Cytoscape v3.8.2 problems on mac OS 11.5.2 - system check failure - cytoscape

I recently tried downloading Cytoscape v3.8.2 to my computer (mac OS 11.5.2). I saw the warning about the issue with the latest mac OS update and downloaded the disable-opencl.dummy file and placed it in the CytoscapeConfiguration directory as suggested. I still had trouble opening Cytoscape so I continued looking through the suggested troubleshooting protocol. I checked my Java version and ran the system checker script:
java version "12.0.1" 2019-04-16
Java(TM) SE Runtime Environment (build 12.0.1+12)
Java HotSpot(TM) 64-Bit Server VM (build 12.0.1+12, mixed mode, sharing)
############# Cytoscape System Requirements Checker for Mac ##############
Target Cytoscape version: 3.8.2
Your shell is bash
Fail: This version of OS is not supported: 11.5.2
Please upgrade your system to 10.11 or newer.
I wasn't sure how to proceed with an error that says my systems needs to be upgraded to 10.11 or newer when I'm already running 11.5.2.

Cytoscape requires java 11 and will not work with Java 12, unfortunately. Typically we support only the LTS versions, so we plan on supporting Java 17 (the next LTS version) with Cytoscape 3.10. Try installing Java 11 and see if things work better for you.
-- scooter

Related

WAS 8.5.5.9 on java sdk1.6 need to update to java sdk8

I am trying to update only the java SDK in WebSphere 8.5.5.9 to 8
So far steps performed:-
IBM Instalation Manager was of version 1.5.2 updated it to 1.8.5
I have the javasdk8 (8.0.2.10-WS-IBMWASJAVA-Win) downloaded already.
Started IBM Installation Manager-> Install -> selected IBM WebSphere SDK JAVA Tech Edition -> Next -> Getting message as Operating system is below the recommended minimum level for this product.
It does gives a link to check the details but its not much clear.
You can find the minimum supported levels for Java 8 here:
http://www-01.ibm.com/support/docview.wss?uid=swg27045339
From that doc:
In 8.5.5.14 and later, or when selecting "IBM WebSphere SDK Java
Technology Edition 8.0" at installation time on 8.5.5.11 and later
prior operating system releases (such as Windows 2008, HP-UX 11iv2,
RedHat Enterprise Linux 5, SLES 11 .0, SLES 10, Solaris 10, and z/OS
1.12) will no longer be supported.
Operating System minimums:
AIX
AIX 6.1 TL7
AIX 7.1 TL3
HP-UX IA64
HP-UX 11i v3 (11.31)
IBM i
IBM i V7R1
Linux
RedHat Enterprise Linux 6
RedHat Enterprise Linux 7
SLES 11.1 (SP1)
SLES 12
Ubuntu 12.04 LTS
Ubuntu 14.04 LTS
Ubuntu 16.04 LTS
Windows
Windows 7 service pack 1
Windows 8 (not Metro)
Windows Server 2012
Windows Server 2016
Solaris
Solaris 11
z/OS
z/OS 1.13
z/OS 2.1
z/OS 2.2
Hope that helps.

How to upgrade chromedriver version for appium?

I am getting the following error when attempting to run an Appium script on the Chrome Version 65:
selenium.common.exceptions.WebDriverException: Message: unknown error: call function result missing 'value'
(Session info: chrome=65.0.3325.109)
(Driver info: chromedriver=2.33.506106 (8a06c39c4582fbfbab6966dbb1c38a9173bfb1a2),platform=Mac OS X 10.13.4 x86_64)
I have found that the chromedriver version needs to be updated but I can't find a way to successfully do this.
So my question is how do I upgrade the chromedriver version to the latest version?
So first, with each update to Chromedriver there is an increase in the minimum supported version of Chrome => older devices are often unable to be automated with the bundled version.
So its not appium/chromdriver compatibility, its your device browser/ chromdriver versions compatibility check.
To check versions compatibility you go look here
When you figure out whats version works for you, run:
npm install appium --chromedriver_version="2.37"
This version supports Chrome v 64-66
The subjected issue can be resolved (In my case this works) if we pass the additional argument while starting the appium server in the local system.
CLI Command: appium --allow-insecure chromedriver_autodownload
The script will automatically search for the newest chromedriver version that supports the given browser/web view, download it (the hash sum is verified as well for the downloaded archive) and add to the chromedriverChromeMappingFile mapping.
For more details please refer to the official documentation of appium: Compatible chromedriver issue fixes options
Hope this helps!
Thanks.
Please download the latest chromedriver from here :
https://sites.google.com/a/chromium.org/chromedriver/downloads
Upgrade your appium server, appium java client to latest version.

Multi-OS Engine not compatible with Mac OS X 10.12 Sierra

What are the implications of this message installing Multi-OS Engine from Intel on my Mac OSX Sierra:
Unsupported OS Detected operating system is not supported. Supported
operating systems for this release are: OS X* 10.9 (Intel(R) 64),
10.10 (Intel(R) 64), 10.11 (Intel(R) 64)
Installation succeed and I can debug app from Android Studio Plugin, but I'm having problems Building IPA to Deploy App to AppStore. Is this a common problem from Multi-OS Engine executing on Mac OS X 10.12 Sierra? Are there any other problems and is there guide to solve them?
I'm using LibGDX to develop a game. This is what I see when I go to Build > Export IPA for Application:
There is no Module Name, iOS SDK and Provisioning Profile available.
There is no MOE installation necessary anymore. Look at this page for more information. MOE sdk is available via gradle. And I used it with Sierra

MonoDevelop fails when trying to debug on device

I'm trying to install the iOS app I'm developing on my device, but each time I try MonoDevelop crashes. First the CPU usage spikes and then it stops responding. It seems to be failing when the debugger tries to connect to the device. The application is installed on the device and I can use the app, but I need to see the application output.
I'm using the newest version of MonoDevelop and version 6.0.0 of MonoTouch. Are there any other users with the same experience who have solved this problem?
edit
this is the version information from monodevelop. I've had to treat it like code because else the stackoverflow editor would have made it unreadable.
MonoDevelop 3.1.1
Installation UUID: cf274ee7-dfe8-4ba8-b44c-2c7a0d9a45ab
Runtime:
Mono 2.10.9 (tarball)
GTK 2.24.10
GTK# (2.12.0.0)
Package version: 210090011
Apple Developer Tools:
Xcode 4.5.2 (1847)
Build 4G2008a
Monotouch: 6.0.6
Mono for Android: 4.4.55
Android SDK: /Users/.../Library/Developer/Xamarin/android-sdk-mac_x86
Supported Android versions:
2.1 (API level 7)
2.2 (API level 8)
2.3 (API level 10)
3.1 (API level 12)
4.0 (API level 14)
4.1 (API level 16)
4.2 (API level 17)
Java SDK: /usr
Xamarin.Mac: Not Installed
Build information:
Release ID: 30101000
Git revision: 5d928ec4f9d5864b4db04a1301b8a8649b43fb9d
Build date: 2012-12-14 19:11:30+0000
Xamarin addins: 80f2dcc8fe4ed316b3e77dde496fc33d90305047
Operating System:
Mac OS X 10.8.2
Darwin ---.local 12.2.0 Darwin Kernel Version 12.2.0
Sat Aug 25 00:48:52 PDT 2012
root:xnu-2050.18.24~1/RELEASE_X86_64 x86_64
I got that a lot in the past, while working with a library that wasn't available for the simulator. For me, it was (probably) related to usb link. What you should try:
Turn off itunes (that one is hard to do, you hear a lot of weird sounds around you when music is down)
Enable debugging over wifi (instead of USB) in monodevelop (Preferences>Debugger>iPhone Debugger)
It helped me, hope it'll help you
Not sure what the problem was in the end. OS X seemed to have gone corrupt and wouldn't even start properly any more. Besides the problems I had with MonoDevelop I also started having problems in different software. The solution was to do a full clean install of OS X. I have now been able to update MonoDevelop and MonoTouch and can once again debug apps on devices.
I'm sorry if my solution can't help any other people directly, but perhaps the answer Stephane Delcroix gave may help you!

Installing Xcode 3.2.5 on Mac OS X 10.6

This is my systems software config.
System Version: Mac OS X 10.6 (10A432)
Kernel Version: Darwin 10.0.0
i am trying to install xcode 3.2.5 but it says that need 10.6.4. What is the latest version that i can use with installation and i think 10.6 is snow leopard so this version should work. but i m a very very new as far as mac is concerned and know close to nothing. so please any pointers as to what i should do would be greatly appreciated.
regards,
khizar
You need 10.6.4 or later. Upgrade from your 10.6.x to the latest version of 10.6, the upgrade is free, just select "Software Update..." from the Apple menu.

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