biopython

biopython

BioPython Entrez article limit

Parse ENA .cds file

how to do manual search on NCBI with biopython and add link to publication

Error with BiGSCAPE even after installing

Searching for a Python tool to annotate the phylogenetic trees

Determine location of optimal hydrogen bond donor/acceptor pair?

Error "StreamModeError: Fasta files must be opened in text mode" in BioPython on a Streamlit App

How do I extract neighboring proteins from a .faa file?

BioPython ValueError: alphabet is None; cannot interpret sequence

Text string using Biopython

Biopython NcbiblastpCommandline not working: "No such file or directory: 'test.xml"

Biopython : how to extract only relevant atom and save a pdb file (not locally)?

Why does the 'join' method for Seq object in Biopython not work on the last element of a list?

How do I translate an atom using Biopython? The transform method is throwing error

What can I do add this counts, and make right dataframe?

Biopython PDB - finding RNA chains

Can the PDB module of Biopython handle CONECT records

retrieve_pdb_file from Bio.PDB.PDBList creates .ent files, not .pdb

How to print the best matching hit in the BLAST search? / BioPython

can't retrieving files from pubmed using biopython

How can I use the biopython Restriction package with all enzymes that are on REBASE?

How to get the PDB id of a mystery sequence?

Writing and saving GenBank files with biobython SeqIO module

How to query a region in a fasta file using biopython?

Find sequence IDs of DNA subsequences in DNA-sequences from FASTA-file

Biopython SeqIO error: local variable 'qual' referenced before assignment

Retrieving SwissProt from ExPASy server - error

SeqIO.parse throwing error in genbank files

Biopython PDBIO assembly chain IDs

Biopython: Extract CDS from modified GenBank records?

How do I do multiple pairwise alignments from a FASTA file and print the percentage similarity?

Extracting titles of articles deposited in pubmed from Pubmed IDs using bioentrez

Biopython: How to download all of the peptide sequences (or all records associated to a particular term) in NCBI?

How to remove an invalid sequence from a Genbank file containing multiple genome sequences based on ID

How to download _full_ RefSeq record using Efetch?

Biopython Genbank.Record : trying to understand source code

is that possible to do igblast(Analyze immunoglobulin (Ig) sequences) with python/biopython

Biopython fail to access hetero-residue directly

Key error in biopython while creating motif

SearchIO.parse xml blast and ampersands cElementTree.ParseError: not well-formed (invalid token) error

Biopython with netbeans

Is there any way to get abstracts for a given list of pubmed ids?

Rotate a certain portion of PDB file around a provided vector

Create a polymer chain of nonstandard residues from a single residue pdb

DSSP from Biopython throwing an error 'NameError: global name 'FileNotFoundError''

Is there any fast and efficient way to get abstracts from pubmed?

Biopython: MMTFParser can't find distances between atoms

Why is Entrez email address not specified in biopython even if given my NCBI log-in email?

Search in a consensus sequence with ambiguous bases

"invalid sequence" error in seqio.write() of biopython

biopython FeatureLocation comparison

gap characters corresponding to the missing residues in a protein sequence using biopython

how to align lists of words using biopython pairwise2

Biopython: Cant use .count() for biopython

Can Biopython parse Derwent GENESEQ format?

Making a function to turn quality strings into a list of Phred scores

Biopython installation for Windows 7 64 bit

muscle from biopython Non-zero return code 137

Entrez.esummary ('gene' db): how to retrieve uid from DictElement?

How can I get the length of a protein chain from a PDB file with Biopython?

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