node installed in docker container but not npm - docker

I have this DockerFile
FROM docker:17.12.0-ce as static-docker-source
FROM ubuntu:18.04
FROM python:3.8-slim-buster
ARG CLOUD_SDK_VERSION=335.0.0
ENV CLOUD_SDK_VERSION=$CLOUD_SDK_VERSION
ENV PATH "$PATH:/opt/google-cloud-sdk/bin/"
COPY --from=static-docker-source /usr/local/bin/docker /usr/local/bin/docker
RUN apt-get -qqy update && apt-get install -qqy \
curl \
gcc \
apt-transport-https \
lsb-release \
openssh-client \
git \
gnupg && \
pip install crcmod && \
export CLOUD_SDK_REPO="cloud-sdk-$(lsb_release -c -s)" && \
echo "deb https://packages.cloud.google.com/apt $CLOUD_SDK_REPO main" > /etc/apt/sources.list.d/google-cloud-sdk.list && \
curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - && \
apt-get update && \
apt-get install -y google-cloud-sdk=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-app-engine-python=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-app-engine-python-extras=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-cbt=${CLOUD_SDK_VERSION}-0 \
kubectl && \
gcloud --version && \
docker --version && kubectl version --client
VOLUME ["/root/.config"]
RUN curl -sL https://deb.nodesource.com/setup_8.x | bash -
RUN curl -sL https://sentry.io/get-cli/ | bash -
RUN apt-get install -y nodejs build-essential pkg-config libcairo2-dev libjpeg-dev libgif-dev
ADD requirements.txt /
ADD requirements-prod.txt /
ADD submodules /
RUN python --version
RUN pip3 install --upgrade pip
RUN pip3 install -r /requirements.txt
RUN pip3 install -r /requirements-prod.txt
when I run node --version it returns v10.24.0 (I think it should be 8.x.y ....).
And when I run npm --version it returns bash: npm: command not found
Shouldn't node install npm too ?
Thanks

So I fixed it by changing my DockerFile.
I deleted FROM python:3.8-slim-buster as I read that having multiple 'FROM' on a dockerfile could cause conflict. And I installed python with apt like this:
RUN apt-get -qqy update && apt-get install -qqy \
curl \
gcc \
python3.8 \
python3-pip \
python3.8-dev \
However, it is not perfect to me because I now have python3.6.x under python 3, python 2.7.x under python and I must specified python3.8 when I need it...
My new DockerFile:
FROM docker:17.12.0-ce as static-docker-source
FROM ubuntu:18.04
ARG CLOUD_SDK_VERSION=335.0.0
ENV CLOUD_SDK_VERSION=$CLOUD_SDK_VERSION
ENV PATH "$PATH:/opt/google-cloud-sdk/bin/"
COPY --from=static-docker-source /usr/local/bin/docker
/usr/local/bin/docker
RUN apt-get -qqy update && apt-get install -qqy \
curl \
gcc \
python3.8 \
python3-pip \
python3.8-dev \
apt-transport-https \
lsb-release \
openssh-client \
git \
gnupg && \
pip3 install crcmod && \
export CLOUD_SDK_REPO="cloud-sdk-$(lsb_release -c -s)" && \
echo "deb https://packages.cloud.google.com/apt $CLOUD_SDK_REPO main" > /etc/apt/sources.list.d/google-cloud-sdk.list && \
curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - && \
apt-get update && \
apt-get install -y google-cloud-sdk=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-app-engine-python=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-app-engine-python-extras=${CLOUD_SDK_VERSION}-0 \
google-cloud-sdk-cbt=${CLOUD_SDK_VERSION}-0 \
kubectl && \
gcloud --version && \
docker --version && kubectl version --client
VOLUME ["/root/.config"]
RUN curl -sL https://deb.nodesource.com/setup_8.x | bash -
RUN curl -sL https://sentry.io/get-cli/ | bash -
RUN apt-get install -y nodejs build-essential pkg-config libcairo2-dev
libjpeg-dev libgif-dev
RUN node --version
RUN npm --version
RUN python --version
ADD requirements.txt /
ADD requirements-prod.txt /
ADD submodules /
RUN python --version
RUN pip3 install --upgrade pip
RUN pip3 install -r /requirements.txt
RUN pip3 install -r /requirements-prod.txt

Related

Dockerfile not correctly installing dependencies

I am having an issue with installing dependencies with a Dockerfile. The image builds successfully, but when I attempt to test some of the dependencies installed in the Dockerfile below, they do not seem to be found. I am new to creating Dockerfiles so I am not sure if I am missing something. This may having something to do with environment variables? For example, I install sl as a test to confirm that something is not right. When a access a shell of my running image, running 'sl' returns "Command not found". Please let me know what I am doing wrong.
Here is my Dockerfile that I am using to build an image:
#FROM specifies the parent image from which we will construct our own custom image. This tomcat image contains a limited dist of Ubuntu, Tomcat9, and JRE11 ("temurin" is just a limited version of Java)
FROM tomcat:9-jre11-temurin
#add a maintainer label to the image
LABEL maintainer="Kerrick Cavanaugh - kerrickcavanaugh#ufl.edu"
#SciPy, Pandas, Numpy, other deps
RUN apt-get update && \
yes | apt-get -qq -y install \
git \
build-essential \
software-properties-common \
# python-dev \
python3 \
python3-dev \
python-dev \
libssl-dev \
# libffi-dev \
libxml2-dev \
libxslt1-dev \
apt-utils \
zlib1g-dev \
pip \
python3-pip \
sl \
gfortran \
libopenblas-dev \
liblapack-dev \
wget
# add /root/.local/bin to python path (causing warnings)
RUN python3 -c "import sys; sys.path.append('/root/.local/bin');"
RUN pip3 install --upgrade pip && pip3 install -vvv \
wheel \
matplotlib \
ipython \
jupyter \
sympy \
cython \
et-xmlfile==1.0.1 \
imbalanced-learn==0.5.0 \
imblearn==0.0 \
jdcal==1.4.1 \
joblib==0.14.0 \
numpy==1.16.4 \
scipy==1.3.1 \
openpyxl==2.6.4 \
pandas==0.24.2 \
python-dateutil==2.8.0 \
pytest==4.6.3 \
pytest-cov==2.7.1 \
pytz==2019.3 \
scikit-learn==0.21.3 \
six==1.12.0 \
xlrd==1.2.0
#R
RUN apt update && echo 'Y' | apt upgrade && \
#removed sudo from next 4
echo 'Y' | apt install dirmngr gnupg apt-transport-https ca-certificates software-properties-common && \
echo 'Y' | apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
echo 'Y' | add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/' && \
echo 'Y' | apt install r-base && \
R --version
#MATLAB???
#FSL
COPY ./aidp_docker/fslinstaller.py /usr/local/tomcat
#printf '36' | <-- for keyboard
#removed sudo
RUN apt-get update && apt-get -qq install python2
RUN { echo; echo '36'; } | python2 /usr/local/tomcat/fslinstaller.py -E -v -q > /dev/null
#AFNI
RUN cd && \
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_20_64_a_admin.txt && \
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_20_64_b_user.tcsh && \
curl -O https://raw.githubusercontent.com/afni/afni/master/src/other_builds/OS_notes.linux_ubuntu_20_64_c_nice.tcsh && \
#removed sudo
bash OS_notes.linux_ubuntu_20_64_a_admin.txt 2>&1 | tee o.ubuntu_20_a.txt && \
tcsh OS_notes.linux_ubuntu_20_64_b_user.tcsh 2>&1 | tee o.ubuntu_20_b.txt
#dcm2niix
RUN curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_lnx.zip
#ANTsR, ANTsRCore, ITKR
RUN git clone https://github.com/stnava/ITKR.git && \
git clone https://github.com/ANTsX/ANTsRCore.git && \
git clone https://github.com/ANTsX/ANTsR.git && \
R -e 'install.packages(c("Rcpp", "RcppEigen", "magrittr"))' && \
R CMD INSTALL ITKR && \
R CMD INSTALL ANTsRCore && \
R CMD INSTALL ANTsR
#COPY the specified folder structure and associated scripts to /usr/local/tomcat
COPY ./aidp_docker/ /usr/local/tomcat
#COPY wAIDP.war to the image
COPY ./wAIDP.war /usr/local/tomcat/webapps
#build complete
RUN echo 'Build complete!'
#runs the Docker image
CMD ["catalina.sh", "run"]

Install libjpeg.so.8 Debian 11 inside Docker

I tried to integrate an application - QCPump - inside an existing Docker, with an other application - QAtrack+. The goal is to use QCPump inside QAtrack+.
The application code seems to be integrated but when I launch it, I have an error :
ImportError: libjpeg.so.8: cannot open shared object file: No such file or directory
The error is raised by the wxPython package.
Okay, so I have to install it. Unfortunately, my Docker linux is Debian 11, and Debian seems to grab this package several years ago. So, after some reseach, I found that this package is "replaced" - for Debian - by libjpeg-dev. So, I did it. And same result ...
I found the code of the librairy (wxPython) and a docker part has done for Debian 10 : https://github.com/wxWidgets/Phoenix/blob/master/docker/build/debian-10/Dockerfile
I took this part and integrated it in my DockerFile :
RUN apt-get install -y \
freeglut3 \
freeglut3-dev \
libgl1-mesa-dev \
libglu1-mesa-dev \
libgstreamer-plugins-base1.0-dev \
libgtk-3-dev \
libjpeg-dev \
libnotify-dev \
libsdl2-dev \
libsm-dev \
libtiff-dev \
libwebkit2gtk-4.0-dev \
libxtst-dev; \
apt-get clean;
But same ...
In some forum, people mentionned the LD have to be update. I tried this way but I am not pretty sure :
RUN export LD_LIBRARY_PATH=/usr/local/lib
And to be honest, I am not sure this is the problem and so the solution here...
Any idea about this problem ?
Following, my complete DockerFile if you need it ;)
FROM python:3.6
RUN echo 'deb http://apt.postgresql.org/pub/repos/apt/ stretch-pgdg main' > /etc/apt/sources.list.d/pgdg.list
RUN wget --quiet -O - https://www.postgresql.org/media/keys/ACCC4CF8.asc | apt-key add -
RUN apt-get update && apt-get install -y \
cron postgresql-client-10 cifs-utils dos2unix \
&& rm -rf /var/lib/apt/lists/*
RUN apt-get install tzdata
ENV TZ 'Europe/Paris'
RUN dpkg-reconfigure -f noninteractive tzdata
RUN touch /root/.is_inside_docker
RUN pip install virtualenv
RUN date "+%H:%M:%S %d/%m/%y"
RUN apt-get -q update && \
apt-get install -yq chromium && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update -y && apt-get install -y libsdl2-ttf-2.0-0 && \
apt-get update -y && apt-get install -y libjpeg-dev libaio1 libaio-dev && \
wget -q -O /tmp/libpng12.deb http://mirrors.kernel.org/ubuntu/pool/main/libp/libpng/libpng12- 0_1.2.54-1ubuntu1_amd64.deb \
&& dpkg -i /tmp/libpng12.deb \
&& rm /tmp/libpng12.deb \
&& apt-get install -y \
freeglut3 \
freeglut3-dev \
libgl1-mesa-dev \
libglu1-mesa-dev \
libgstreamer-plugins-base1.0-dev \
libgtk-3-dev \
libjpeg-dev \
libnotify-dev \
libsdl2-dev \
libsm-dev \
libtiff-dev \
libwebkit2gtk-4.0-dev \
libxtst-dev; \
apt-get clean;
RUN export LD_LIBRARY_PATH=/usr/local/lib
WORKDIR /usr/src/qatrackplus

Installing haskell's cabal or ghcup inside a dockerfile wont work

This is my dockerfile for haskell:
FROM ubuntu:focal
RUN apt-get update && apt-get install -y build-essential curl \
libffi-dev libffi7 libgmp-dev libgmp10 \
libncurses-dev libncurses5 libtinfo5
ENV BOOTSTRAP_HASKELL_NONINTERACTIVE=1
RUN sh -c "curl --proto '=https' --tlsv1.2 -sSf https://get-ghcup.haskell.org | sh"
RUN sh -c "curl -sSL https://get.haskellstack.org/ | sh"
even though it install ghcup I cannot run cabal neither ghcup.
What is wrong?
Even running this inside the docker container in bash will say
[ Warn ] Cabal ver 3.4.0.0 already installed; if you really want to reinstall it, you may want to run 'ghcup rm cabal 3.4.0.0' first
but I cannot launch cabal or ghcup.
ghcup maintainer here.
I recommend to use ghcup as follows in Docker, which will not require messing with PATH:
FROM ubuntu:focal
ARG DEBIAN_FRONTEND=noninteractive
ENV TZ=Europe/Berlin
# install dependencies
RUN \
apt-get update -y && \
apt-get install -y --no-install-recommends \
curl \
libnuma-dev \
zlib1g-dev \
libgmp-dev \
libgmp10 \
git \
wget \
lsb-release \
software-properties-common \
gnupg2 \
apt-transport-https \
gcc \
autoconf \
automake \
build-essential
# install gpg keys
ARG GPG_KEY=7784930957807690A66EBDBE3786C5262ECB4A3F
RUN gpg --batch --keyserver keys.openpgp.org --recv-keys $GPG_KEY
# install ghcup
RUN \
curl https://downloads.haskell.org/~ghcup/x86_64-linux-ghcup > /usr/bin/ghcup && \
chmod +x /usr/bin/ghcup && \
ghcup config set gpg-setting GPGStrict
ARG GHC=8.10.7
ARG CABAL=latest
# install GHC and cabal
RUN \
ghcup -v install ghc --isolate /usr/local --force ${GHC} && \
ghcup -v install cabal --isolate /usr/local/bin --force ${CABAL}
You can read about isolated installations here.
You have to include their paths to PATH in order to be discoverable.
In addition, I prefer to use bash instead of sh.
This one is working as expected and note the two different ways to declare ENV variables as also some common commands:
FROM debian:stable-slim as build
# Install dependencies *You don't need all of them
RUN apt-get update -y \
&& apt-get upgrade -y \
&& apt-get install -y git jq bc make automake libnuma-dev \
&& apt-get install -y rsync htop curl build-essential \
&& apt-get install -y pkg-config libffi-dev libgmp-dev \
&& apt-get install -y libssl-dev libtinfo-dev libsystemd-dev \
&& apt-get install -y zlib1g-dev make g++ wget libncursesw5 libtool autoconf \
&& apt-get clean
# Install ghcup
ENV BOOTSTRAP_HASKELL_NONINTERACTIVE=1
RUN bash -c "curl --proto '=https' --tlsv1.2 -sSf https://get-ghcup.haskell.org | sh"
RUN bash -c "curl -sSL https://get.haskellstack.org/ | sh"
# Add ghcup to PATH
ENV PATH=${PATH}:/root/.local/bin
ENV PATH=${PATH}:/root/.ghcup/bin
# Install cabal
RUN bash -c "ghcup upgrade"
RUN bash -c "ghcup install cabal 3.4.0.0"
RUN bash -c "ghcup set cabal 3.4.0.0"
# Install GHC
RUN bash -c "ghcup install ghc 8.10.4"
RUN bash -c "ghcup set ghc 8.10.4"
# Update Path to include Cabal and GHC exports
RUN bash -c "echo PATH="$HOME/.local/bin:$PATH" >> $HOME/.bashrc"
RUN bash -c "echo export LD_LIBRARY_PATH="/usr/local/lib:$LD_LIBRARY_PATH" >> $HOME/.bashrc"
RUN bash -c "source $HOME/.bashrc"
# Update cabal
RUN bash -c "cabal update"

docker bash: npm: command not found after building container

I'm building an image with the the below Dockerfile.
But after building, when I run npm install it says bash: npm: command not found
I have 2 RUN commands to build 2 layers, the first one is basically to build the Python environment for the image, including installing pyodbc driver and install the necessary packages.
The second layer is to install node.
Which step is wrong with the dockerfile?
ARG VARIANT=3
FROM mcr.microsoft.com/vscode/devcontainers/python:0-${VARIANT}
# Avoid warnings by switching to noninteractive
ENV DEBIAN_FRONTEND=noninteractive
ENV PYTHONUNBUFFERED 1
ARG USERNAME=vscode
ARG USER_UID=1000
ARG USER_GID=$USER_UID
# [Optional] Update UID/GID if needed
RUN if [ "$USER_GID" != "1000" ] || [ "$USER_UID" != "1000" ]; then \
groupmod --gid $USER_GID $USERNAME \
&& usermod --uid $USER_UID --gid $USER_GID $USERNAME \
&& chmod -R $USER_UID:$USER_GID /home/$USERNAME; \
fi
# [Optional] If your requirements rarely change, uncomment this section to add them to the image.
#
COPY requirements.txt /tmp/pip-tmp/
RUN curl https://packages.microsoft.com/keys/microsoft.asc | apt-key add - \
&& curl https://packages.microsoft.com/config/debian/10/prod.list > /etc/apt/sources.list.d/mssql-release.list \
&& apt-get -y update \
&& ACCEPT_EULA=Y apt-get -y install msodbcsql17 \
&& ACCEPT_EULA=Y apt-get -y install mssql-tools \
&& echo 'export PATH="$PATH:/opt/mssql-tools/bin"' >> ~/.bash_profile \
&& echo 'export PATH="$PATH:/opt/mssql-tools/bin"' >> ~/.bashrc \
&& /bin/bash -c "source ~/.bashrc" \
&& apt-get install -y unixodbc-dev \
&& pip3 install django-mssql-backend \
&& apt-get install -y libgssapi-krb5-2 \
&& pip3 --disable-pip-version-check --no-cache-dir install -r /tmp/pip-tmp/requirements.txt \
&& rm -rf /tmp/pip-tmp
# ** [Optional] Uncomment this section to install additional packages. **
#
RUN apt-get update \
&& apt-get -y install --no-install-recommends apt-utils dialog 2>&1 \
#
# Verify git, process tools, lsb-release (common in install instructions for CLIs) installed
&& apt-get -y install git iproute2 procps lsb-release \
#
# Install pylint
#&& pip install pylint \
#
# Update Python environment based on requirements.txt
# && pip --disable-pip-version-check --no-cache-dir install -r /tmp/pip-tmp/requirements.txt \
# && rm -rf /tmp/pip-tmp \
#
# Install node for building front-ends
&& apt-get update \
&& apt-get -y install curl gnupg \
&& curl -sL https://deb.nodesource.com/setup_14.x | bash - \
&& apt-get -y install nodejs \
#
# Clean up
&& apt-get autoremove -y \
&& apt-get clean -y \
&& rm -rf /var/lib/apt/lists/*
# Switch back to dialog for any ad-hoc use of apt-get
ENV DEBIAN_FRONTEND=
Debian Nodejs could be boguous. Use official nodejs instructions https://github.com/nodesource/distributions/blob/master/README.md#debinstall to install nodejs.

I need some guidance with Docker returning a non-zero code 100

I'm trying to run a Docker build that's worked before, only now I'm on Ubuntu instead of Mac OSX.
I've tried changing the code, adding -y after apt-get update, commenting out part of code, but still get the same result.
This is my Docker file:
FROM nodesource/trusty:5.6.0
RUN locale-gen en_US.UTF-8 && \
apt-get update && \
apt-get upgrade -y && \
apt-get install -y software-properties-common
RUN LC_ALL=en_US.UTF-8 add-apt-repository -y ppa:ondrej/php && \
apt-get update && \
apt-get install -y gcc \
nginx \
php5.6 \
php5.6-common \
php5.6-cli \
php5.6-cgi \
php5.6-fpm \
php5.6-apcu \
php5.6-dev \
php5.6-mysqlnd \
php5.6-gd \
php5.6-gmp \
php5.6-imap \
php5.6-curl \
curl \
libsqlite3-dev \
ruby1.9.1-dev \
sqlite3 \
unzip \
php-pear \
php5.6-xsl \
php5.6-sqlite \
openssh-client \
php5.6-mcrypt \
php5.6-mbstring
RUN ln -sfn /usr/bin/php5.6 /usr/bin/php
RUN /usr/bin/curl -sS https://getcomposer.org/installer | /usr/bin/php -- --install-dir=/usr/bin --filename=composer --version=1.0.0
RUN npm install -g gulp bower
This is the error:
Removing intermediate container 07a0c4bb3da2
The command '/bin/sh -c LC_ALL=en_US.UTF-8 add-apt-repository -y ppa:ondrej/php && apt-get update -y && apt-get install -y gcc nginx php5.6 php5.6-common php5.6-cli php5.6-cgi php5.6-fpm php5.6-apcu php5.6-dev php5.6-mysqlnd php5.6-gd php5.6-gmp php5.6-imap php5.6-curl curl libsqlite3-dev ruby1.9.1-dev sqlite3 unzip php-pear php5.6-xsl php5.6-sqlite openssh-client php5.6-mcrypt php5.6-mbstring' returned a non-zero code: 100```
It appears that the PPA ppa:ondrej/php no longer supports Ubuntu Trusty and no longer contains any packages for it (which makes sense, as Trusty became end-of-life in April 2019). You need to update your Docker image to be based on a more recent Ubuntu version, such as Bionic, currently the most recent LTS version.

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