How to dump jvm memery in docker swarm mode? - docker

My springcloud applications are running in docker swarm mode, and recently I found that the memory usage is not in the normal level. I want to use some tools like jmap or something else to dump the heap so that I can change the params of jvm and solve the problem.
I have tried to use some tools like arthas ,but it failed because of the pid 1 problem. We can not attach to a process which id is 1-5.
How can I know the heap usage ( eden、survivor etc) ?

The easiest way I think is to get into container's shell and install necessary tools right there. Use this on a node with the application container to start interactive session:
docker exec -u root -it <container_name> sh
Stop the container after you finished to recreate it and thus clean up.
If at some point you need to extract a file from container (e.g. dump) use docker cp from another console on the node:
docker cp <container_name>:<path_in_container> <local_path>

Related

Using remove option with interactive docker container [duplicate]

I am trying Docker for the first time and do not yet have a "mental model". Total beginner.
All the examples that I am looking at have included the --rm flag to run, such as
docker run -it --rm ...
docker container run -it --rm ...
Question:
Why do these commands include the --rm flag? I would think that if I were to go through the trouble of setting up or downloading a container with the good stuff in it, why remove it? I want to keep it to use again.
So, I know I have the wrong idea of Docker.
Containers are merely an instance of the image you use to run them.
The state of mind when creating a containerized app is not by taking a fresh, clean ubuntu container for instance, and downloading the apps and configurations you wish to have in it, and then let it run.
You should treat the container as an instance of your application, but your application is embedded into an image.
The proper usage would be creating a custom image, where you embed all your files, configurations, environment variables etc, into the image. Read more about Dockerfile and how it is done here
Once you did that, you have an image that contains everything, and in order to use your application, you just run the image with proper port settings or other dynamic variables, using docker run <your-image>
Running containers with --rm flag is good for those containers that you use for very short while just to accomplish something, e.g., compile your application inside a container, or just testing something that it works, and then you are know it's a short lived container and you tell your Docker daemon that once it's done running, erase everything related to it and save the disk space.
The flag --rm is used when you need the container to be deleted after the task for it is complete.
This is suitable for small testing or POC purposes and saves the headache for house keeping.
From https://docs.docker.com/engine/reference/run/#clean-up---rm
By default a container’s file system persists even after the container exits. This makes debugging a lot easier (since you can inspect the final state) and you retain all your data by default. But if you are running short-term foreground processes, these container file systems can really pile up. If instead you’d like Docker to automatically clean up the container and remove the file system when the container exits, you can add the --rm flag
In short, it's useful to keep the host clean from stopped and unused containers.
When you run a container from an image using a simple command like (docker run -it ubuntu), it spins up a container. You attach to your container using docker attach container-name (or using exec for different session).
So, when you're within your container and working on it and you type exit or ctrl+z or any other way to come out of the container, other than ctrl+p+q, your container exits. That means that your container has stopped, but it is still available on your disk and you can start it again with : docker start container-name/ID.
But when you run the container with —rm tag, on exit, the container is deleted permanently.
I use --rm when connecting to running containers to perform some actions such as database backup or file copy. Here is an example:
docker run -v $(pwd):/mnt --link app_postgres_1:pg --rm postgres:9.5 pg_dump -U postgres -h pg -f /mnt/docker_pg.dump1 app_db
The above will connect a running container named 'app_postgres_1' and create a backup. Once the backup command completes, the container is fully deleted.
The "docker run rm " command makes us run a new container and later when our work is completed then it is deleted by saving the disk space.
The important thing to note is, the container is just like a class instance and not for data storage. We better delete them once the work is complete. When we start again, it starts fresh.
The question comes then If the container is deleted then what about the data in a container? The data is actually saved in the local system and get linked to it when the container is started. The concept is named as "Volume or shared volume".

Is there a point in Docker start?

So, is there a point in the command "start"? like in "docker start -i albineContainer".
If I do this, I can't really do anything with the albine inside the container, I would have to do a run and create another container with the "-it" command and "sh" after (or "/bin/bash", don't remember it correctly right now).
Is that how it will go most of the times? delete and rebuilt containers and do the command "-it" if you want to do stuff in them? or would it more depend on the Dockerfile, how you define the cmd.
New to Docker in general and trying to understand the basics on how to use it. Thanks for the help.
Running docker run/exec with -it means you run the docker container and attach an interactive terminal to it.
Note that you can also run docker applications without attaching to them, and they will still run in the background.
Docker allows you to run a program (which can be bash, but does not have to be) in an isolated environment.
For example, try running the jenkins docker image: https://hub.docker.com/_/jenkins.
this will create a container, without you having attach to it, and you would still be able to use it.
You can also attach to an existing, running container by using docker exec -it [container_name] bash.
You can also use docker logs to peek at the stdout of a certain docker container, without actually attaching to its shell interactively.
You almost never use docker start. It's only possible to use it in two unusual circumstances:
If you've created a container with docker create, then docker start will run the process you named there. (But it's much more common to use docker run to do both things together.)
If you've stopped a container with docker stop, docker start will run its process again. (But typically you'll want to docker rm the container once you've stopped it.)
Your question and other comments hint at using an interactive shell in an unmodified Alpine container. Neither is a typical practice. Usually you'll take some complete application and its dependencies and package it into an image, and docker run will run that complete packaged application. Tutorials like Docker's Build and run your image go through this workflow in reasonable detail.
My general day-to-day workflow involves building and testing a program outside of Docker. Once I believe it works, then I run docker build and docker run, and docker rm the container once I'm done. I rarely run docker exec: it is a useful debugging tool but not the standard way to interact with a process. docker start isn't something I really ever run.

Detach container from host console

I am creating a docker container with Ubuntu:16.04 image using python docker package. I am passing tty as True and detach as True to the client.containers.run() function. The container starts with /sbin/init process. The container is created successfully. But the problem is, the login prompt on my host machine is replaced with the container login prompt on my host machine console. As a result, I am not able to the login on the machine on the console. SSH connection to the machine work fine.
This happens even when I run my python script after connecting SSH to the machine. I tried different options like setting tty to False, setting stdout to False, setting the environment variable TERM to xterm in the container, but nothing help.
It would be really great if someone can suggest a solution for this problem.
My script is very simple:
import docker
client = docker.from_env()
container = client.containers.run('ubuntu:16.04', '/sbin/init', privileged=True,
detach=True, tty=True, stdin_open=True, stdout=False, stderr=False,
environment=['TERM=xterm'])
I am not using any dockerfile.
I have been able to figure out that this problem happens when I start container in privileged mode. If I do this, the /sbin/init process launches /sbin/agetty processes which causes /dev/tty to be attached to the container. I need to figure out a way to start /sbin/init in such a way that it does not create /sbin/agetty processes.
/sbin/init in Ubuntu is a service called systemd. If you look at the linked page it does a ton of things – configures various kernel parameters, mounts filesystems, configures the network, launches getty process, .... Many of these things require changing host-global settings, and if you launch a container with --privileged you're allowing systemd to do that.
I'd give two key recommendations on this command:
Don't run systemd in Docker. If you really need a multi-process init system, supervisord is popular, but prefer single-process containers. If you know you need some init(8) (process ID 1 has some responsibilities) then tini is another popular option.
Don't directly run bare Linux distribution images. Whatever software you're trying to run, it's almost assuredly not in an alpine or ubuntu image. Build a custom image that has the software you need and run that; you should set up its CMD correctly so that you can docker run the image without any manual setup.
Also remember that the ability to run any Docker command at all implies unrestricted root-level access over the host. You're seeing some of that here where a --privileged container is taking over the host's console; it's also very very easy to read and edit files like the host's /etc/shadow and /etc/sudoers. There's nothing technically wrong with the kind of script you're showing, but you need to be extremely careful with standard security concerns.

Rotate log for application in docker container

I have an application which writes log into file (example /var/log/my_app).
Before Docker I used supervisor to start my app and logrotate.d for rotation logs.
Logrotate.d runs script for supervisor to restart my app after log rotate (for delete old log file and create new one):
supervisor restart my_app
How I should do with Docker?
As I know if we use docker container with only one running app we should not use supervisor (start and restart will do docker). So how can I use logrotate.d for this?
Create “volume” for log dir and setup logrotate.d to restart Docker container? But I think it’s not a good idea.
Use logrotate.d within Docker container with my app? For each Docker image I will install logrotate.d and instead of run script for supervisor I should run script for close my app (kill -9 or something else).
If you decide to move to Docker you should also adapt your application.
Applications running in containers should write their logs to the console (system out). You can achieve that by using a CONSOLE appender in your logger configuration.
Once that is done you can inspect your logs from outside the container with:
docker logs <container_name>
You can also follow the logs (like you would do with "tail -f"):
docker logs -f <container_name>
You can also change the logging driver used by your container and do more fancy stuff with your logs.
See more details here: https://docs.docker.com/config/containers/logging/configure/
There are two possible options
Your application should write logs to console. Then the logs will be managed using docker logs command
If application must write logs to a file, your application should rotate the logs. Most programming languages support log frameworks that provide this functionality.

What is the '--rm' flag doing?

I am trying Docker for the first time and do not yet have a "mental model". Total beginner.
All the examples that I am looking at have included the --rm flag to run, such as
docker run -it --rm ...
docker container run -it --rm ...
Question:
Why do these commands include the --rm flag? I would think that if I were to go through the trouble of setting up or downloading a container with the good stuff in it, why remove it? I want to keep it to use again.
So, I know I have the wrong idea of Docker.
Containers are merely an instance of the image you use to run them.
The state of mind when creating a containerized app is not by taking a fresh, clean ubuntu container for instance, and downloading the apps and configurations you wish to have in it, and then let it run.
You should treat the container as an instance of your application, but your application is embedded into an image.
The proper usage would be creating a custom image, where you embed all your files, configurations, environment variables etc, into the image. Read more about Dockerfile and how it is done here
Once you did that, you have an image that contains everything, and in order to use your application, you just run the image with proper port settings or other dynamic variables, using docker run <your-image>
Running containers with --rm flag is good for those containers that you use for very short while just to accomplish something, e.g., compile your application inside a container, or just testing something that it works, and then you are know it's a short lived container and you tell your Docker daemon that once it's done running, erase everything related to it and save the disk space.
The flag --rm is used when you need the container to be deleted after the task for it is complete.
This is suitable for small testing or POC purposes and saves the headache for house keeping.
From https://docs.docker.com/engine/reference/run/#clean-up---rm
By default a container’s file system persists even after the container exits. This makes debugging a lot easier (since you can inspect the final state) and you retain all your data by default. But if you are running short-term foreground processes, these container file systems can really pile up. If instead you’d like Docker to automatically clean up the container and remove the file system when the container exits, you can add the --rm flag
In short, it's useful to keep the host clean from stopped and unused containers.
When you run a container from an image using a simple command like (docker run -it ubuntu), it spins up a container. You attach to your container using docker attach container-name (or using exec for different session).
So, when you're within your container and working on it and you type exit or ctrl+z or any other way to come out of the container, other than ctrl+p+q, your container exits. That means that your container has stopped, but it is still available on your disk and you can start it again with : docker start container-name/ID.
But when you run the container with —rm tag, on exit, the container is deleted permanently.
I use --rm when connecting to running containers to perform some actions such as database backup or file copy. Here is an example:
docker run -v $(pwd):/mnt --link app_postgres_1:pg --rm postgres:9.5 pg_dump -U postgres -h pg -f /mnt/docker_pg.dump1 app_db
The above will connect a running container named 'app_postgres_1' and create a backup. Once the backup command completes, the container is fully deleted.
The "docker run rm " command makes us run a new container and later when our work is completed then it is deleted by saving the disk space.
The important thing to note is, the container is just like a class instance and not for data storage. We better delete them once the work is complete. When we start again, it starts fresh.
The question comes then If the container is deleted then what about the data in a container? The data is actually saved in the local system and get linked to it when the container is started. The concept is named as "Volume or shared volume".

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