running docker command from within a container - docker

I am using the docker gdal image to run certain commands for example:
docker run --rm -v /storage/:/storage osgeo/gdal gdal_translate -stats -of GTiff input.tif output.tif
however, the code that is executing these commands is within another container itself, so running this command doesn't work since docker is not found:
/bin/sh: 1: docker: not found
what can I do to resolve this? the gdal docker image is from another source

If you have available a statically linked docker client binary on your host, you can:
$ docker run --rm -v /var/run/docker.sock:/var/run/docker.sock \
-v /usr/bin/docker:/usr/bin/docker \
-v /storage/:/storage osgeo/gdal \
gdal_translate -stats -of GTiff input.tif output.tif
This way you don't need to install docker in your container.
The other obvious option is to:
Install docker within your container using the available package manager (depends on the base image used for your container, i.e: apt-get, yum, etc)
Download the pre-compiled binaries directly to your container
Rebuild the original Docker image with docker package already installed to save you the trouble.
As #emory pointed out, if you do not trust the docker image, sharing your Host Docker Daemon might become a security issue. If this is the case, create a docker-machine and proceed with sharing your docker-mahchine Docker Daemon with the container. This is indeed safer!

Related

Cannot use vi or vim command in docker container?

It's CentOS 7, already installed vi and vim in my CentOS and I can use them. I run docker in CentOS, when I excute this line below:
docker exec -it mysolr /bin/bash
I cannot use vi/vim in the solr container:
bash: vim: command not found
Why is that and how do I fix it so I can use vi/vim to edit file in docker container?
A typical Docker image contains a minimal set of libraries and utilities to run one specific program. Additionally, Docker container filesystems are not long-lived: it is extremely routine to delete and recreate a container, for instance to use a newer version of a base image.
The upshot of this is that you never want to directly edit files in a Docker container, and most images aren't set up with "rich" editing tools. (BusyBox contains a minimal vi and so most Alpine-based images will too.) If you make some change, it will be lost as soon as you delete the container. (Similarly, you usually can install vim or emacs or whatever, but it will get lost as soon as the container is deleted: installing software in a running container isn't usually a best practice.)
There are two good ways to deal with this, depending on what kind of file it is.
If the file is part of the application, like a source file, edit, debug, and test it outside of Docker space. Once you're convinced it's right (by running unit tests and by running the program locally), docker build a new image with it, and docker run a new container with the new image.
ed config.py
pytest
docker build -t imagename .
docker run -d -p ... --name containername imagename
...
ed config.py
pytest
docker build -t imagename .
docker stop containername
docker run -d -p ... --name containername imagename
If the file is configuration that needs to be injected when the application starts, the docker run -v option is a good way to push it in. You can directly edit the config file on your host, but you'll probably need to restart (or delete and recreate) the container for it to notice.
ed config.txt
docker run \
-v $PWD/config.txt:/etc/whatever/config.txt \
--name containername -p ... \
imagename
...
ed config.txt
docker stop containername
docker rm containername
docker run ... imagename

Use docker command in jenkins container

My centos version and docker version(install by yum)
Use docker common error in container
My docker run command:
docker run -it -d -u root --name jenkins3 -v /var/run/docker.sock:/var/run/docker.sock -v $(which docker):/usr/bin/docker docker.io/jenkins/jenkins
but,its error when I exec docker info in jenkins container
/usr/bin/docker: 2: .: Can't open /etc/sysconfig/docker
Exposing the host's docker socket to your jenkins container will work with
-v /var/run/docker.sock:/var/run/docker.sock
but you will need to have the docker executable installed in your jenkins image via a Dockerfile.
It is likely the example you are looking at is already using a docker image. A quick google search brings up https://jpetazzo.github.io/2015/09/03/do-not-use-docker-in-docker-for-ci/ whose example uses a docker image (already has the executable installed):
docker run -v /var/run/docker.sock:/var/run/docker.sock \
-ti docker
Also note from that same post your exact issue with mounting the binary:
Former versions of this post advised to bind-mount the docker binary from the host to the container. This is not reliable anymore, because the Docker Engine is no longer distributed as (almost) static libraries.

Start and attach a docker container with X11 forwarding

There are various articles like this, this and this and many more, that explains how to use X11 forwarding to run GUI apps on Docker. I am using a Centos Docker container.
However, all of these approaches use
docker run
with all appropriate options in order to visualize the result. Any use of docker run creates a new image and performs the operation on top of that.
A way to work in the same container is to use docker start followed by docker attach and then executing the commands on the prompt of the container. Additionally, the script (let's say xyz.sh) that I intend to run on Docker container resides inside a folder MyFiles in the root directory of the container and accepts a parameter as well
So is there a way to run the script using docker start and/or docker attach while also X11-forwarding it?
This is what I have tried, although would like to avoid docker run and instead use docker start and docker attach
sudo docker run -it \
--env="DISPLAY" \
--volume="/tmp/.X11-unix:/tmp/.X11-unix:rw" \
centos \
cd MyFiles \
./xyz.sh param1
export containerId='docker ps -l -q'
This in turn throws up an error as below -
/usr/bin/cd: line 2: cd: MyFiles/: No such file or directory
How can I run the script xyz.sh under MyFiles on the Docker container using docker start and docker attach?
Also since the location and the name of the script may vary, I would like to know if it is mandatory to include each of these path in the system path variable on the Docker container or can it be done at runtime also?
It looks to me your problem is not with X11 forwarding but with general Docker syntax.
You could do it rather simply:
sudo docker run -it \
--env="DISPLAY" \
--volume="/tmp/.X11-unix:/tmp/.X11-unix:rw" \
-w MyFiles \
--rm \
centos \
bash -c xyz.sh param1
I added:
--rm to avoid stacking old dead containers.
-w workdir, obvious meaning
/bin/bash -c to get sure your script is interpreted by bash.
How to do without docker run:
run is actually like create then start. You can split it in two steps if you prefer.
If you want to attach to a container, it must be running first. And for it to be running, there must be a process currently running inside.

OS name for docker images

I am trying to build a new docker image using docker provided base Ubuntu image. I'll be using docker file to run few scripts and install applications on the base image. However my script requirement is that the hostname should remain same. I couldn't find any information on OS names for docker images. Does anybody has an idea that once we add layers to a docker image does the OS name remains same.
You can set the hostname with the -h argument to Docker run, otherwise it gets the short form of the container ID as the hostname:
$ docker run --rm -it debian bash
root#0d36e1b1ac93:/# exit
exit
$ docker run --rm -h myhost -it debian bash
root#myhost:/# exit
exit
As far as I know, you can't tell docker build to use a given hostname, but see Dockerfile HOSTNAME Instruction for docker build like docker run -h.

I lose my data when the container exits

Despite Docker's Interactive tutorial and faq I lose my data when the container exits.
I have installed Docker as described here: http://docs.docker.io/en/latest/installation/ubuntulinux
without any problem on ubuntu 13.04.
But it loses all data when exits.
iman#test:~$ sudo docker version
Client version: 0.6.4
Go version (client): go1.1.2
Git commit (client): 2f74b1c
Server version: 0.6.4
Git commit (server): 2f74b1c
Go version (server): go1.1.2
Last stable version: 0.6.4
iman#test:~$ sudo docker run ubuntu ping
2013/10/25 08:05:47 Unable to locate ping
iman#test:~$ sudo docker run ubuntu apt-get install ping
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
iputils-ping
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 56.1 kB of archives.
After this operation, 143 kB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu/ precise/main iputils-ping amd64 3:20101006-1ubuntu1 [56.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 56.1 kB in 0s (195 kB/s)
Selecting previously unselected package iputils-ping.
(Reading database ... 7545 files and directories currently installed.)
Unpacking iputils-ping (from .../iputils-ping_3%3a20101006-1ubuntu1_amd64.deb) ...
Setting up iputils-ping (3:20101006-1ubuntu1) ...
iman#test:~$ sudo docker run ubuntu ping
2013/10/25 08:06:11 Unable to locate ping
iman#test:~$ sudo docker run ubuntu touch /home/test
iman#test:~$ sudo docker run ubuntu ls /home/test
ls: cannot access /home/test: No such file or directory
I also tested it with interactive sessions with the same result. Did I forget something?
EDIT: IMPORTANT FOR NEW DOCKER USERS
As #mohammed-noureldin and others said, actually this is NOT a container exiting. Every time it just creates a new container.
You need to commit the changes you make to the container and then run it. Try this:
sudo docker pull ubuntu
sudo docker run ubuntu apt-get install -y ping
Then get the container id using this command:
sudo docker ps -l
Commit changes to the container:
sudo docker commit <container_id> iman/ping
Then run the container:
sudo docker run iman/ping ping www.google.com
This should work.
When you use docker run to start a container, it actually creates a new container based on the image you have specified.
Besides the other useful answers here, note that you can restart an existing container after it exited and your changes are still there.
docker start f357e2faab77 # restart it in the background
docker attach f357e2faab77 # reattach the terminal & stdin
There are following ways to persist container data:
Docker volumes
Docker commit
a) create container from ubuntu image and run a bash terminal.
$ docker run -i -t ubuntu:14.04 /bin/bash
b) Inside the terminal install curl
# apt-get update
# apt-get install curl
c) Exit the container terminal
# exit
d) Take a note of your container id by executing following command :
$ docker ps -a
e) save container as new image
$ docker commit <container_id> new_image_name:tag_name(optional)
f) verify that you can see your new image with curl installed.
$ docker images
$ docker run -it new_image_name:tag_name bash
# which curl
/usr/bin/curl
In addition to Unferth's answer, it is recommended to create a Dockerfile.
In an empty directory, create a file called "Dockerfile" with the following contents.
FROM ubuntu
RUN apt-get install ping
ENTRYPOINT ["ping"]
Create an image using the Dockerfile. Let's use a tag so we don't need to remember the hexadecimal image number.
$ docker build -t iman/ping .
And then run the image in a container.
$ docker run iman/ping stackoverflow.com
There are really great answers above to the asked question. There might be no need for another answer but still I want to give my personal opinion on the topic in the simplest words possible.
Here are some points about containers & images that will help us for a conclusion:
A docker image can be:
created-from-a-given-container
deleted
used-to-create-any-number-of-containers
A docker container can be:
created-from-an-image
started
stopped
restarted
deleted
used-to-create-any-number-of-images
A docker run command does this:
Downloads an image or uses a cached image
Creates a new container out of it
Starts the container
When a Dockerfile is used to create an image:
It is already well known that the image will eventually be used to run a docker container.
After issuing docker build command, docker behind-the-scenes creates a running container with a base-file-system and follows steps inside the Dockerfile to configure that container as per the developers need.
After the container is configured with specs of the Dockerfile, it will be committed as an image.
The image gets ready to rock & roll!
Conclusion:
As we can see, a docker container is independent of a docker image.
A container can be restarted provided the unique ID of that container [use docker ps --all to get the id].
Any operation like making a new directory, creating files, installing tools, etc. can be done inside the container when it is running. Once the container is stopped, it persists all the changes. Container stopping and restarting is like rebooting a computer system.
An already created container is always available for a restart but when we issue docker run command, a new container is created out of an image and hence it is like a new computer system. The changes made inside the old container - as we can understand now - are not available in this new container.
A final note:
I guess it's now obvious why the data seems to be lost yet it is always there.. but in a different [old] container. So, take a good note of the difference in docker start & docker run command & never get confused in them.
I have got a much simpler answer to your question, run the following two commands
sudo docker run -t -d ubuntu --name mycontainername /bin/bash
sudo docker ps -a
the above ps -a command returns a list of all containers. Take the name of the container which references the image name - 'ubuntu' . docker auto generates names for the containers for example - 'lightlyxuyzx', that's if you don't use the --name option.
The -t and -d options are important, the created container is detached and can be reattached as given below with the -t option.
With --name option, you can name your container in my case 'mycontainername'.
sudo docker exec -ti mycontainername bash
and this above command helps you login to the container with bash shell. From this point on any changes you make in the container is automatically saved by docker.
For example - apt-get install curl inside the container
You can exit the container without any issues, docker auto saves the changes.
On the next usage, All you have to do is, run these two commands every time you want to work with this container.
This Below command will start the stopped container:
sudo docker start mycontainername
sudo docker exec -ti mycontainername bash
Another example with ports and a shared space given below:
docker run -t -d --name mycontainername -p 5000:5000 -v ~/PROJECTS/SPACE:/PROJECTSPACE 7efe2989e877 /bin/bash
In my case:
7efe2989e877 - is the imageid of a previous container running
which I obtained using
docker ps -a
You might want to look at docker volumes if you you want to persist the data in your container. Visit https://docs.docker.com/engine/tutorials/dockervolumes/. The docker documentation is a very good place to start
My suggestion is to manage docker, with docker compose. Is an easy to way to manage all the docker's containers for your project, you can map the versions and link different containers to work together.
The docs are very simple to understand, better than docker's docs.
Docker-Compose Docs
Best
the similar problem (and no way Dockerfile alone could fix it) brought me to this page.
stage 0:
for all, hoping Dockerfile could fix it: until --dns and --dns-search will appear in Dockerfile support - there is no way to integrate intranet based resources into.
stage 1:
after building image using Dockerfile (by the way it's a serious glitch Dockerfile must be in the current folder), having an image to deploy what's intranet based, by running docker run script. example:
docker run -d \
--dns=${DNSLOCAL} \
--dns=${DNSGLOBAL} \
--dns-search=intranet \
-t pack/bsp \
--name packbsp-cont \
bash -c " \
wget -r --no-parent http://intranet/intranet-content.tar.gz \
tar -xvf intranet-content.tar.gz \
sudo -u ${USERNAME} bash --norc"
stage 2:
applying docker run script in daemon mode providing local dns records to have ability to download and deploy local stuff.
important point: run script should be ending with something like /usr/bin/sudo -u ${USERNAME} bash --norc to keep container running even after the installation scripts finishes.
no, it's not possible to run container in interactive mode for the full automation matter as it will remain inside internal shall command prompt until CTRL-p CTRL-q being pressed.
no, if interacting bash will not be executed at the end of the installation script, the container will terminate immediately after finishes script execution, loosing all installation results.
stage 3:
container is still running in background but it's unclear whether container has ended installation procedure or not yet. using following block to determine execution procedure finishes:
while ! docker container top ${CONTNAME} | grep "00[[:space:]]\{12\}bash \--norc" -
do
echo "."
sleep 5
done
the script will proceed further only after completed installation. and this is the right moment to call: commit, providing current container id as well as destination image name (it may be the same as on the build/run procedure but appended with the local installation purposes tag. example: docker commit containerID pack/bsp:toolchained.
see this link on how to get proper containerID
stage 4: container has been updated with the local installs as well as it has been committed into newly assigned image (the one having purposes tag added). it's safe now to stop container running. example: docker stop packbsp-cont
stage5: any moment the container with local installs require to run, start it with the image previously saved.
example: docker run -d -t pack/bsp:toolchained
a brilliant answer here How to continue a docker which is exited from user kgs
docker start $(docker ps -a -q --filter "status=exited")
(or in this case just docker start $(docker ps -ql) 'cos you don't want to start all of them)
docker exec -it <container-id> /bin/bash
That second line is crucial. So exec is used in place of run, and not on an image but on a containerid. And you do it after the container has been started.
None of the answers address the point of this design choice. I think docker works this way to prevent these 2 errors:
Repeated restart
Partial error

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