GDAL: library not loasded libhdf5.100.dylib - hdf5

I would like to run a GMT file wrote in tcsh environment. When I'm running it, I have the following error message :
dyld: Library not loaded: /opt/local/lib/libhdf5.100.dylib
Referenced from: /opt/local/lib/gmt4/bin/gmtset
Reason: image not found
I went to /opt/local/lib path, and indeed, libhdf5.103.dylib is installing, and not libhdf5.100.dylib. I did not find a way to reinstall libhdf5.100.dylib using port or brew.
The later doesn't work :
sudo port install libhdf5-100
sudo port install libhdf5.100
sudo port install libhdf5.100.dylib
I already try:
brew reinstall osgeo-gdal --build-from-source
But, this doesn't work. I have the following issue:
Warning: You are using macOS 10.11.
We (and Apple) do not provide support for this old version.
You will encounter build failures with some formulae.
Please create pull requests instead of asking for help on Homebrew's GitHub,
Discourse, Twitter or IRC. You are responsible for resolving any issues you
experience while you are running this old version.
qt: macOS Sierra or newer is required.
Error: An unsatisfied requirement failed this build.
Do you have any ideas?
Thank you.

Looks like gdal needs to be rebuilt with the current hdf5. You can try:
sudo port uninstall gdal && sudo port install -s gdal
This will build gdal from source and link against the installed HDF5 library.

Related

Error: yq#3 has been disabled because it is not maintained upstream! How to install a disabled brew Formulae?

I'm trying to install yq#3 on my Mac running brew install yq#3 and I get the error:
Error: yq#3 has been disabled because it is not maintained upstream!
I see that it's there on their website at https://formulae.brew.sh/formula/yq#3#default but it doesn't seem to be supported anymore.
I still need to install it since our projects at work are using this specific version.
The only way that I'm thinking about is downloading the source code, building it myself, and adding it to the path but I'm thinking that there might be a simpler solution.
Any suggestion?
Thanks!
From yq github, you can install a binary by running:
wget https://github.com/mikefarah/yq/releases/download/3.4.1/yq_darwin_amd64 -O /usr/local/bin/yq &&\
chmod +x /usr/local/bin/yq
3.4.1 is the latest 3 version, darwin_amd64 is the Mac package (don't worry about having an Intel machine and installing the package that says AMD, the name comes from something about AMD invented the 64-bit instruction set).

Installing Wine on Mac OS Catalina. Error: No available formula with the name "wine"

I'm trying to install Wine on my Mac via Brew. I'm using Catalina and just updated brew, installed XQuartz and have Xcode installed. When I type the command "Brew install wine" it returns the following:
Error: No available formula with the name "wine"
==> Searching for a previously deleted formula (in the last month)...
Warning: homebrew/core is shallow clone. To get complete history run:
git -C "$(brew --repo homebrew/core)" fetch --unshallow
wine was deleted from homebrew/core in commit 82bd38bc:
wine: delete
To show the formula before removal run:
git -C "$(brew --repo homebrew/core)" show 82bd38bc^:Formula/wine.rb
If you still use this formula consider creating your own tap:
https://docs.brew.sh/How-to-Create-and-Maintain-a-Tap
I'm following this tutorial: https://www.davidbaumgold.com/tutorials/wine-mac/
When I run Brew doctor I get the following:
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!
Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and which additional flags to use when
compiling and linking.
Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew-provided
script of the same name. We found the following "config" scripts:
/Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7-config
/Library/Frameworks/Python.framework/Versions/3.7/bin/python3.7m-config
/Library/Frameworks/Python.framework/Versions/3.7/bin/python3-config
Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected dylibs:
/usr/local/lib/libtcl8.6.dylib
/usr/local/lib/libtk8.6.dylib
Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected header files:
/usr/local/include/fakemysql.h
/usr/local/include/fakepq.h
/usr/local/include/fakesql.h
/usr/local/include/itcl.h
/usr/local/include/itcl2TclOO.h
/usr/local/include/itclDecls.h
/usr/local/include/itclInt.h
/usr/local/include/itclIntDecls.h
/usr/local/include/itclMigrate2TclCore.h
/usr/local/include/itclTclIntStubsFcn.h
/usr/local/include/mysqlStubs.h
/usr/local/include/odbcStubs.h
/usr/local/include/pqStubs.h
/usr/local/include/tcl.h
/usr/local/include/tclDecls.h
/usr/local/include/tclOO.h
/usr/local/include/tclOODecls.h
/usr/local/include/tclPlatDecls.h
/usr/local/include/tclThread.h
/usr/local/include/tclTomMath.h
/usr/local/include/tclTomMathDecls.h
/usr/local/include/tdbc.h
/usr/local/include/tdbcDecls.h
/usr/local/include/tdbcInt.h
/usr/local/include/tk.h
/usr/local/include/tkDecls.h
/usr/local/include/tkPlatDecls.h
Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected .pc files:
/usr/local/lib/pkgconfig/tcl.pc
/usr/local/lib/pkgconfig/tk.pc
Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected static libraries:
/usr/local/lib/libtclstub8.6.a
/usr/local/lib/libtkstub8.6.a
I'm not sure these warnings has something to do with it.
Thanks in advance!
I was able to build Wine 64 bit from source on macOS Catalina and successfully run Notepad++ 64 bit on it.
My steps were more or less something like that:
Download Wine 4.20 from https://dl.winehq.org/wine/source/4.x/wine-4.20.tar.xz
Extract it
In terminal go to extracted directory
Run: ./configure --enable-win64
It showed that it cannot find some library (I do not remember what exactly) so I installed it with macports (sudo port install name_of_missing_package reported by ./configure)
After I was able to run ./configure --enable-win64 succesfully without errors in terminal run: make
It compiled after more than 30 minutes.
I run it with: ./wine start
It opened windows console and here I was able to cd to Notepad++ 64 bit directory (downloaded from https://notepad-plus-plus.org/repository/7.x/7.0/npp.7.bin.x64.zip note that newest version did not work and throwed some errors about some dll's)
I typed notepad++ to run exe file
It showed some errors about freetype fonts so I installed them with macports and I had to copy them from /opt/X11/lib to /usr/local/lib before wine detected them
After fixing freetype fonts problem I was able to run notepad++
Also you might want to run: sudo spctl --master-disable to disable gatekeeper if you will see some system alerts about loading app from unknown developer.
Also note that instead of ./wine start you can run ./wine explorer for graphical file manager instead of console
Those steps might not be exactly precise, as I'm not sure if I did not miss something but hope it will help someone.
Also note that obviously wine on macOS Catalina will be able to run only some 64 bit windows apps and all 32 bit windows app will not work. I also tested it with IrfanView 64 bit (https://www.fosshub.com/IrfanView.html?dwl=iview453_x64_setup.exe) and it also works fine.
In case you wanted to get wine working for purpose of running 32 bit games then unfortunately it will not work with wine but you can try with virtualbox. You can check https://www.youtube.com/watch?v=3AO8dF0vviQ for some performance improvements tips.
Wine hast been removed from homebrew due to the incompatibility to Macos Catalina
https://discourse.brew.sh/t/issue-with-wine/6188/3
Try using wine64 to run your .exe files after installing wine. The manuals and references don't seem to mention this explicitly.
More Info
I followed the guidance in the wine manual to install using home-brew. After install, I got an error when trying to test the installation like it says in the quickstart.
Install wine-stable using homebrew
brew tap homebrew/cask-versions
brew install --cask --no-quarantine wine-stable
After install, test by opening notepad
wine notepad
zsh: bad CPU type in executable: wine
While uninstalling wine, I noticed one of the linked libraries was called wine64. I immediately reinstalled and tried again using wine64 as the call, as I am using wine on an M1 Mac. This was successful!
You can also use winehelp to get access to more commands that will work with 64bit processor.
Based on https://github.com/Homebrew/homebrew-core/pull/46556#issuecomment-559938873 you can do brew cask install wine-stable on newer version of OS X. And works with recent versions of homebrew since the source version was moved :(
How to install wine on Mac OS Catalina with brew
install homebrew with
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
install xquartz to install wine using brew
brew cask install xquartz
install wine using brew
brew install homebrew/cask-versions/wine-devel
run wine and check the version
wine64 --version
As of Wine 5.0 there is no 32bit support on mac in the official version, but you are able to achieve it via the
Unofficial Wineskin Winery
You can download it from github releases here. And then create a Wineskin with WS11WineCX[64/32]bit19.0.[0/1]. All WS11 versions support Catalina. To use it you also need to turn off the no32exec boot argument. You theoretically can do it by typing:
sudo nvram boot-args="no32exec=0"
into the Terminal while you're logged in but it didn't work out for me, so if you'll have the same problem, reboot into the Recovery mode, in the menubar pick Utilities -> Terminal and type just:
nvram boot-args="no32exec=0"
(without sudo).
Example
To be more exact, to install eg. Steam 32bit, you would:
Install the Unofficiall Wineskin Winery from the provided link
Turn on the 32bit execution boot argument by going into Recovery Mode and entering nvram boot-args="no32exec=0" into the terminal
Open Wineskin, click the '+' sign and scroll down to find the WS11WineCX64bit19.0.1 (the newest version with 64 and 32 bit support, at the time of writing)
Click update/install under the Wrapper Version.
Click Create New Blank Wrapper, name it and click through installation of mono and gecko.
Launch the Wrapper App from Finder. Click Install Software, choose setup executable, and proceed through installation. Then pick the executable from a menu. (In case of steam, Steam.exe)
Note: If you get the "No windows app to open the file"(Like I did) error, click advanced -> configuration and set the Windows EXE to the path to the installer. Then find the place that it has installed in and set that as Windows EXE. Then you can run by clicking Test Run.
Enjoy your windows app, as an .app file!
Hope I helped!

valgrind installation using brew on macOS High Sierra 10.13.2

I get the following error when trying to install valgrind on the version of macOS using brew:
valgrind: This formula either does not compile or function as expected
on macOS versions newer than Sierra due to an upstream
incompatibility. Error: An unsatisfied requirement failed this build.
I have tried to follow suggestions from all related posts on the issue, and even tried building valgrind using the ./configure option after downloading the source tarball. But that too fails with a gcc incompatibility error, which I am unable to overcome, despite following workaround suggestions on the Web.
Any help would be appreciated.
TIA
Vinod
brew install --HEAD valgrind seems to work now.
See this issue for more details.
You may wish to build it directly and install instead of using home-brew. I have created a port of valgrind 3.13.0 to work on macOS High Sierra (10.13.x). You can get it here: https://github.com/padiakalpesh/valgrind_3.13_high_sierra
Once you have obtained the source, run the following commands from inside the source directory:
./configure
make
sudo make install

Installing Google's ios-webkit-debug-proxy

I'm attempting to get google's ios webkit debug proxy working on my laptop, running ubuntu 15.04.
https://github.com/google/ios-webkit-debug-proxy
I've followed their installation instructions as best I could. However, I'm new to both web development and linux and am having trouble at the step where I run ./autogen.sh.
It runs its checks for a while, but then I receive the following error from the terminal:
checking for libimobiledevice... no
configure: error: Package requirements (libimobiledevice-1.0 >= 1.2.0) were not met:
Requested 'libimobiledevice-1.0 >= 1.2.0' but version of libimobiledevice is 1.1.6
Consider adjusting the PKG_CONFIG_PATH environment variable if you
installed software in a non-standard prefix.
Alternatively, you may set the environment variables libimobiledevice_CFLAGS
and libimobiledevice_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.
I've tried my luck with troubleshooting this on my own but can't figure it out.
Anyone out there familiar with this error and what it wants me to do? Is my file-path messed up or do I need a different version of libimobiledevice (which I believe I have the most updated one)?
As the error says, you need libimobiledevice 1.2 or higher. Compiling it from source is a solution:
Download libimobiledevice 1.2: http://www.libimobiledevice.org/downloads/libimobiledevice-1.2.0.tar.bz2
Extract: tar xf libimobiledevice-1.2.0.tar.bz2
cd libimobiledevice-1.2.0
./configure
make
sudo make install
You should now be able to successfully build ios-webkit-debug-proxy.
You may need to run sudo ldconfig afterwards to update the library cache.

Where can I get version 16.0.0 of libfreetype.6.dylib for ImageMagick on MAMP

When running imagemagick under MAMP I get the error message:
command output :"dyld: Library not loaded: /opt/local/lib/libfreetype.6.dylib
Referenced from: /Applications/MAMP/bin/ImageMagick/ImageMagick-6.7.9/bin/convert
Reason: Incompatible library version: convert requires version 16.0.0 or later, but libfreetype.6.dylib provides version 15.0.0"
I have searched everywhere I can think of but can't find a solution to this. One posting I saw suggested commenting out the DYLD_LIBRARY_PATH in envvars but this did not make any difference.
Figured it out. I ran:
$ locate libfreetype.6.dylib
and discovered that there are multiple version of that dylib including a version in /opt/local/lib where macports installs imagemagick. I copied that version to the location in MAMP where it was installed and it solved the issue.
$ cp /opt/local/lib/libfreetype.6.dylib /Applications/MAMP/Library/lib/
Make sure you make a backup of the MAMP version before copying over it just in case something goes wrong.
I had the same issue. For me works this:
sudo port selfupdate
sudo port install ImageMagick
sudo pecl update-channels
sudo pecl install imagick
Then I run
find . -name "imagick.so"
and use the given path in MAMP php.ini.
In the end I commented out the DYLD_LIBRARY_PATH lines in /Applications/MAMP/Library/bin/envvars

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