I have a server where I run some containers with volumes. All my volumes are in /var/lib/docker/volumes/ because docker is managing it. I use docker-compose to start my containers.
Recently, I tried to stop one of my container but it was impossible :
$ docker-compose down
[17849] INTERNAL ERROR: cannot create temporary directory!
So, I checked how the data is mounted on the server :
$ df -h
Filesystem Size Used Avail Use% Mounted on
udev 7,8G 0 7,8G 0% /dev
tmpfs 1,6G 1,9M 1,6G 1% /run
/dev/md3 20G 19G 0 100% /
tmpfs 7,9G 0 7,9G 0% /dev/shm
tmpfs 5,0M 0 5,0M 0% /run/lock
tmpfs 7,9G 0 7,9G 0% /sys/fs/cgroup
/dev/md2 487M 147M 311M 33% /boot
/dev/md4 1,8T 1,7G 1,7T 1% /home
tmpfs 1,6G 0 1,6G 0% /run/user/1000
As you can see, the / is only 20Go, so it is full and I can't stop my containers using docker-compose.
My questions are :
There is a simple solution to increase the available space in the
/, using /dev/md4 ?
Or can I move volumes to another place without losing data ?
This part of the Docker Daemon is confirgurable. Best practices would have you change the data folder; this can be done with OS-level Linux commands like a symlink... I would say it's better to actually configure the Docker Daemon to store the data elsewhere!
You can do that by editing the Docker command line (e.g. the systemd script that starts the Docker daemon), or change /etc/docker/daemon.json.
The file should have this content:
{
"data-root": "/path/to/your/docker"
}
If you add a new hard drive, partition, or mount point you can add it here and docker will store its data there.
I landed here as I had the very same issue. Even though some sources suggest you could do it with a symbolic link this will cause all kinds of issues.
Depending on the OS and Docker version I had malformed images, weird errors or the docker-daemon refused to start.
Here is a solution, but it seems it varies a little from version to version. For me the solution was:
Open
/lib/systemd/system/docker.service
And change this line
ExecStart=/usr/bin/dockerd -H fd:// --containerd=/run/containerd/containerd.sock
to:
ExecStart=/usr/bin/dockerd -g /mnt/WHATEVERYOUR/PARTITIONIS/docker --containerd=/run/containerd/containerd.sock
I solved it creating a symbolic link to a partition with bigger size:
ln -s /scratch/docker_meta /var/lib/docker
/scratch/docker_meta is the folder that I have in a bigger partition.
Do a bind mount.
For example, moving /docker/volumes to /mnt/large.
Append line into /etc/fstab.
/mnt/large /docker/volumes none bind 0 0
And then.
mv /docker/volumes/* /mnt/large/
mount /docker/volumes
Do not forget chown and chmod of /mnt/large first, if you are using non-root docker.
Related
I have been using the VSCode Remote Container Plugin for some time without issue. But today when I tried to open my project the remote container failed to open with the following error:
Command failed: docker exec -w /home/vscode/.vscode-server/bin/9833dd88 24d0faab /bin/sh -c echo 34503 >.devport
rejected promise not handled within 1 second: Error: ENOSPC: no space left on device, mkdir '/home/vscode/.vscode-server/data/logs/20191209T160810
It looks like the container is out of disk space but I'm not sure how to add more.
Upon further inspection I am a bit confused. When I run df from in the container it shows that I have used 60G of disk space but the size of my root directory is only ~9G.
$ df
Filesystem Size Used Avail Use% Mounted on
overlay 63G 61G 0 100% /
tmpfs 64M 0 64M 0% /dev
tmpfs 7.4G 0 7.4G 0% /sys/fs/cgroup
shm 64M 0 64M 0% /dev/shm
/dev/sda1 63G 61G 0 100% /etc/hosts
tmpfs 7.4G 0 7.4G 0% /proc/acpi
tmpfs 7.4G 0 7.4G 0% /sys/firmware
$ du -h --max-depth=1 /
9.2G /
What is the best way to resolve this issue?
Try docker system prune --all if you don't see any container or images with docker ps and docker images, but be careful it removes all cache and unused containers, images and network. docker ps -a and docker images -a shows you all the containers and images including ones that are currently not running or not in use.
Check the docs if problem persists: Clean unused docker resources
It looks like all docker containers on your system share the same disk space. I found two solutions:
Go into Docker Desktop's settings and increase the amount of disk space available.
Run docker container prune to free disk space being used by stopped containers.
In my case I had a bunch stopped docker containers from months back taking up all of the disk space allocated to Docker.
I changed Docker's storage base directory from /var/lib/docker to /home/docker by changing DOCKER_OPTIONS in /etc/default/docker as explained in this other question. After that, I rsynced the old /var/lib/docker to the new place.
Here is my Docker configuration file:
# Docker Upstart and SysVinit configuration file
# ....
# Customize location of Docker binary (especially for development testing).
#DOCKER="/usr/local/bin/docker"
# Use DOCKER_OPTS to modify the daemon startup options.
DOCKER_OPTS="--dns 8.8.8.8 --dns 8.8.4.4 -g /home/docker"
# If you need Docker to use an HTTP proxy, it can also be specified here.
#export http_proxy="http://127.0.0.1:3128/"
# This is also a handy place to tweak where Docker's temporary files go.
#export TMPDIR="/mnt/bigdrive/docker-tmp"
Everything was working fine after I rebooted. However, I started getting a "no space left on device" in my containers from time to time. When this error happens, if my container is up, I can't even do a mkdir. If the container is down and I try to start it, I get the following:
Error response from daemon: rpc error: code = 2 desc = "oci runtime
error: could not synchronise with container process: can't create
pivot_root dir , error mkdir .pivot_root: no space left on device"
However, I have space:
Filesystem Size Used Avail Use% Mounted on
udev 32G 4,0K 32G 1% /dev
tmpfs 6,3G 1,6M 6,3G 1% /run
/dev/sda1 92G 56G 32G 64% /
none 4,0K 0 4,0K 0% /sys/fs/cgroup
none 5,0M 0 5,0M 0% /run/lock
none 32G 472K 32G 1% /run/shm
none 100M 0 100M 0% /run/user
/dev/sda5 1,6T 790G 762G 51% /home
I'm suspecting that perhaps I haven't done the storage migration correctly. Does someone know what might be happening?
Running out of disk space can also include inode limits. You can check those with df -i. This post on Unix.SE walks you through the steps required to increase the number of inodes available. Short of that, you can delete files to free up the inodes.
You can try cleaning up images that aren't in use. This fixed the problem for me:
docker images -aq -f 'dangling=true' | xargs docker rmi
As well as volumes. This will remove dangling volumes:
docker volume ls -q -f 'dangling=true' | xargs docker volume rm
https://success.docker.com/article/error-message-no-space-left-on-device-in-default-machine
My hard disk is getting full and I'm suspecting that my Docker container may not have enough disk space.
How can I check that the system allocated enough free disk space for Docker?
My OS is OSX.
Docker for Mac's data is all stored in a VM which uses a thin provisioned qcow2 disk image. This image will grow with usage, but never automatically shrink. (which may be fixed in 1.13)
The image file is stored in your home directories Library area:
mac$ cd ~/Library/Containers/com.docker.docker/Data/com.docker.driver.amd64-linux
mac$ ls -l Docker.qcow2
rw-r--r-- 1 user staff 46671265792 31 Jan 22:24 Docker.qcow2
Inside the VM
Attach to the VM's tty with screen (brew install screen if you don't have it)
$ screen ~/Library/Containers/com.docker.docker/Data/com.docker.driver.amd64-linux/tty
If you get a login prompt, user is root with no password. Otherwise just press enter. Then you can run the df commands on the Linux VM.
/ # df -h /var/lib/docker
Filesystem Size Used Available Use% Mounted on
/dev/vda2 59.0G 14.9G 41.1G 27% /var
Note that this matches the df output inside a container (when using aufs or overlay)
mac$ docker run debian df -h
Filesystem Size Used Avail Use% Mounted on
overlay 60G 15G 42G 27% /
tmpfs 1.5G 0 1.5G 0% /dev
tmpfs 1.5G 0 1.5G 0% /sys/fs/cgroup
/dev/vda2 60G 15G 42G 27% /etc/hosts
shm 64M 0 64M 0% /dev/shm
Also note that while the VM is only using 14.9G of the 60G, the file size is 43G.
mac$ du -h Docker.qcow2
43G Docker.qcow2
The easiest way to fix the size is to backup any volume data, "Reset" docker from the Preferences menu and start again. It appears 1.13 has resolved the issue and will run a compaction on shutdown.
screen notes
Exit the screen session with ctrl-a then d
The Docker VM's tty get's messed up after I exit screen and I have to restart Docker to get a functional terminal back for a new session.
I'am using Rancher to manage some EC2 hosts (4 nodes in an auto-scaling group) & to orchestrate containers. Everything works fine.
But, at some point, I have a recurrent problem of disk space, even if I remove unused and untagged images with this command
docker images --quiet --filter=dangling=true | xargs --no-run-if-empty docker rmi
Like I said, even if I run this command above, my hosts are continuoulsy running out of space :
Filesystem Size Used Avail Use% Mounted on
udev 7.9G 12K 7.9G 1% /dev
tmpfs 1.6G 1.4M 1.6G 1% /run
/dev/xvda1 79G 77G 0 100% /
none 4.0K 0 4.0K 0% /sys/fs/cgroup
none 5.0M 0 5.0M 0% /run/lock
none 7.9G 7.5M 7.9G 1% /run/shm
none 100M 0 100M 0% /run/user
I'am using rancher 1.1.4 and my hosts are running Docker 1.12.5 under Ubuntu 14.04.4. LTS.
Is there something I miss? What are the best practices to configure docker for production hosts in order to avoid this problem?
Thank you for your help.
Do you use volumes mounts ( docker run -v /local/path:/container/path) for persistent data of your containers ?
If no, data written by your containers (database, logs ...) will always grow the last layer of your image run.
To see the real size of your current running containers :
docker ps -s
You can also use tools such as https://www.diskreport.net to analyse your disk space and see what has grown between two measures.
I am trying to build a docker image (using my Dockerfile) and I get a very strange error about insufficient space in the download directory:
Total download size: 208 k
Installed size: 760 k
Downloading packages:
Error downloading packages:
libyaml-0.1.4-11.el7_0.x86_64: Insufficient space in download directory /var/cache/yum/x86_64/7/centos/packages
* free 0
* needed 55 k
PyYAML-3.10-11.el7.x86_64: Insufficient space in download directory /var/cache/yum/x86_64/7/centos/packages
* free 0
* needed 153 k
The command '/bin/sh -c yum -y install python-yaml' returned a non-zero code: 1
I am using a centos7 base image
$ df -h
Filesystem Size Used Avail Use% Mounted on
udev 7.8G 0 7.8G 0% /dev
tmpfs 1.6G 106M 1.5G 7% /run
/dev/sda1 118G 112G 0 100% /
tmpfs 7.9G 648K 7.9G 1% /dev/shm
tmpfs 5.0M 4.0K 5.0M 1% /run/lock
tmpfs 7.9G 0 7.9G 0% /sys/fs/cgroup
/dev/sdb1 92G 206M 87G 1% /boot
tmpfs 1.6G 56K 1.6G 1% /run/user/1001
The following docker command was the trick to fix the underlying error for me:
$ docker rm $(docker ps -qa)
For me, running:
docker image prune
did the trick. It turned out I had lots of garbage (a.k.a., dangling) images taking up space. prune docs can be found here.
Check and make sure the /var directory has sufficient space as that is where docker stores its images.
To do so: df -h /var
If it is 100% full you might want to clear up some space.
docker ps -a - to list all of the containers (including those stopped and exited ones). use docker rm {CONTAINER_ID} to free up some space.
Alternatively do docker images to remove unused images. docker rmi {IMAGE_ID}.
You would need to check where the space was used at first.
du -h /var | grep -E ‘^[0-9.]*[M|G]’
If any specific directory is used too much spaces, you check how to remove it properly. And you do it.
You ever have not removed docker containers or images?
It usually is high possibility for root cause of the unsufficient space issues.
Check it by following command.
du -hs /var/lib/docker
If the directory has too much spaces, you would solve docker commands below.
Removing all containers,
docker rm $(docker ps -qa)
Removing docker all images,
docker rmi $(docker image ls -qa)
But the cause may not be the docker around, such as big log files or rpm cache and some big files. And then you can remove the files.
I hope this help you.