Cocoapods not setting search paths correctly - ios

Question

I opened an iOS (Swift) project today I hadn't touched for a while and it wouldn't build. The first import statement for a Cocoapods framework was throwing a No such module compile error in Xcode. Changing the order of import statements made the error throw on whichever was the first external dependency in my import list.
I fixed this by adding each of my Cocoapods to Framework Search Paths in my project's main target (it has a few targets, including tests, a share extension, and a framework of shared code for the app and extension). These search paths were empty and now look like this:
After doing that the project built fine, but now I'm getting this SIGABRT error every time I try to run the app (both on simulator and device):
dyld: Library not loaded: #rpath/CocoaLumberjack.framework/CocoaLumberjack
Referenced from: [path removed]
Reason: image not found
My guess is this is to do with CocoaLumberjack needing to be linked somewhere else/some other way because of its macros but I don't really know.
I've also tried running pod install, cleaning the build folder and deleting derived data, and running pod deintegrate + pod install with no success.
Is it possible to get Cocoapods to automatically set up my search paths correctly so I don't have these issues? Or is there a manual step I'm missing or have done wrong perhaps?
Edited to add my Podfile:
platform :ios, '11.0'
use_frameworks!
# ignore all warnings from all pods
inhibit_all_warnings!
# This is my shared framework, used by both my app and share extension
target 'XXXShared' do
pod 'SnapKit', '~> 4.0'
pod 'KeychainSwift', '~> 7.0'
pod 'Reveal-SDK', :configurations => ['Debug']
pod 'IQKeyboardManagerSwift'
pod 'APESuperHUD', :git => 'https://github.com/apegroup/APESuperHUD.git'
pod 'WSTagsField', '~> 3.1'
pod 'Cache', '~> 4.2'
pod 'TableKit', '~> 2.5'
pod 'GRDB.swift', '~> 3.2'
pod 'PromiseKit', '~> 6.0'
pod 'Toast-Swift', '~> 3.0.1'
pod 'CocoaLumberjack/Swift'
pod 'CollectionKit'
pod 'PinLayout'
pod 'FlexLayout'
pod 'LayoutKit'
pod 'PromiseKit/Alamofire'
pod 'Alamofire', '~> 4.7'
end
target 'XXX' do
pod 'Reveal-SDK', :configurations => ['Debug']
end
target 'XXX share extension' do
inherit! :search_paths
end
Edited to add screenshots: