caffe install on ubuntu fail on libtiff not found - opencv

I was follow the official install guide CMake Build part met the following error.
/usr/bin/ld: warning: libtiff.so.5, needed by /usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.9, not found (try using -rpath or -rpath-link)
/usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.9: undefined reference to `TIFFReadRGBAStrip#LIBTIFF_4.0'
/usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.9: undefined reference to `TIFFIsTiled#LIBTIFF_4.0'
/usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.9: undefined reference to `TIFFWriteScanline#LIBTIFF_4.0'
//usr/lib/x86_64-linux-gnu/libsoxr.so.0: undefined reference to `GOMP_parallel#GOMP_4.0'
tried ldd told in this post
ldd libopencv.so
ldd: ./libopencv.so: No such file or directory
libtiff-dev and libopencv-dev is installed
sudo apt-get install libtiff-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
Note, selecting 'libtiff5-dev' instead of 'libtiff-dev'
libtiff5-dev is already the newest version (4.0.6-1ubuntu0.2).
0 upgraded, 0 newly installed, 0 to remove and 134 not upgraded.
sudo apt-get install libopencv-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
libopencv-dev is already the newest version (2.4.9.1+dfsg-1.5ubuntu1).
0 upgraded, 0 newly installed, 0 to remove and 134 not upgraded.
-- OpenCV found (/usr/share/OpenCV)
-- Found Atlas (include: /usr/include library: /usr/lib/libatlas.so lapack: /usr /lib/liblapack.so
-- NumPy ver. 1.12.1 found (include: /root/anaconda2/lib/python2.7/site-packages /numpy/core/include)
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- python
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
--
-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : 1.0.0
-- Git : 1.0-14-g4efdf7e
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compare -Wno- unini tialized
-- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Build type : Release
--
-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : OFF
-- BUILD_docs : ON
-- CPU_ONLY : OFF
-- USE_OPENCV : ON
-- USE_LEVELDB : ON
-- USE_LMDB : ON
-- USE_NCCL : OFF
-- ALLOW_LMDB_NOLOCK : OFF
--
-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.58)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 2.6.1)
-- lmdb : Yes (ver. 0.9.17)
-- LevelDB : Yes (ver. 1.18)
-- Snappy : Yes (ver. 1.1.3)
-- OpenCV : Yes (ver. 2.4.9.1)
-- CUDA : Yes (ver. 8.0)
cmake config info show opencv in /usr/share/ do I need to remove them?
I tried to make from opencv source code,but remove the source code later.
It's also said CPU-ONLY OFF but I want to use CPU-ONLY and I uncomment CPU_ONLY :=1 in Makefile.config Is that right?
tried make clean and make all in source path met follow error
warning: libtiff.so.5, needed by /usr/lib/gcc/x86_64-linux-gnu/5/.. /../../x86_64-linux-gnu/libopencv_highgui.so, not found (try using -rpath or -rp ath-link)
.build_release/tools/upgrade_solver_proto_text.o: In function `main':
upgrade_solver_proto_text.cpp:(.text.startup+0x214): undefined reference to `std ::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M _create(unsigned long&, unsigned long)'
.build_release/tools/upgrade_solver_proto_text.o: In function `boost::system::sy stem_error::what() const':
find an answertalk about fix libtiff problem.
locate libtiff.so
/root/anaconda2/pkgs/libtiff-4.0.6-3/lib/libtiff.so
/root/anaconda2/pkgs/libtiff-4.0.6-3/lib/libtiff.so.5
/root/anaconda2/pkgs/libtiff-4.0.6-3/lib/libtiff.so.5.2.4
/usr/lib/x86_64-linux-gnu/libtiff.so
ldd libopencv_highgui.so.2.4.9 | grep libtiff
libtiff.so.5 => not found
I have tried to install opencv from source code,so maybe the x86_ path is from the source code lib?How do I fix it?just remove them?

Related

fbthrift: No generator named 'cpp2' could be found after (seemingly) successful build

I'm trying to install crnn which requires fblualib on Ubuntu 18.04 LTS. While building TH++, an error occured (Complete build print attached below):
[ 10%] Building CXX object CMakeFiles/thpp.dir/Storage.cpp.o
In file included from /home/huiji/Downloads/thpp-master/thpp/Storage.cpp:11:0:
/home/huiji/Downloads/thpp-master/thpp/../thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include **<thpp/if/gen-cpp2/Tensor_types.h>**
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
If I build thpp without using fbthrift and folly by running THPP_NOFB=1 ./build.sh in the thpp directory, the build would be successful (I have thpp files in torch/install/include and torch/install/lib). However, if I move on and build fblualib, an almost identical error occurs:
[ 20%] Building CXX object CMakeFiles/fblualib.dir/LuaUtils.cpp.o
In file included from
/home/huiji/torch/install/include/thpp/Tensor.h:20:0,
from /home/huiji/Downloads/fblualib-master/fblualib/../fblualib/LuaUtils.h:19,
from /home/huiji/Downloads/fblualib- master/fblualib/LuaUtils.cpp:11:
/home/huiji/torch/install/include/thpp/Storage.h:22:10: fatal error:
thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
I figure that there may be something wrong with my fbthrift. Then I tried the following commands under directory "thpp/if/". It seems that my fbthrift can't generate a cpp2-format file, but can generate a cpp/py file, awhile my python thrift_compiler can only generate an errored cpp2-format file.
$ thrift --gen cpp2 Tensor.thrift
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:1] No generator named 'cpp2' could be found!
[WARNING:generation:1] Unable to get a generator for "cpp2".
# Nothing was generated in /thpp/if
$ thrift --gen cpp Tensor.thrift && ls gen-cpp
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:3] No generator named 'cpp2' could be found!
Tensor_constants.cpp Tensor_constants.h Tensor_types.cpp Tensor_types.h
$ thrift --gen py Tensor.thrift && ls -R gen-py
[WARNING:/home/huiji/Downloads/thpp-master/thpp/if/Tensor.thrift:3] No generator named 'cpp2' could be found!
gen-py:
__init__.py Tensor
gen-py/Tensor:
constants.py __init__.py ttypes.py
$ python -m thrift_compiler.main --gen cpp2 Tensor.thrift && ls gen-cpp2
Tensor_fatal_all.h Tensor_fatal.h Tensor_fatal_types.h
Tensor_fatal_constant.h Tensor_fatal_service.h Tensor_fatal_union.h
Tensor_fatal_enum.h Tensor_fatal_struct.h
# A "gen-cpp2" directory was created, but in it there was no "Tensor_types.h"!
$ python -m thrift_compiler.main --gen cpp Tensor.thrift
('Argument Error:', ArgumentError('Language cpp not defined.',))
$ python -m thrift_compiler.main --gen py Tensor.thrift
('Argument Error:', ArgumentError('Language py not defined.',))
By the way, my fbthrift install seemed successful except the python package thrift_compiler was not installed correctly. I've followed GitHubGS's suggestion. That seem to have worked (I can now import thrift_compiler in python, below is what I did) but as you can see, it is not really working.
1.modify /thrift/compiler/CMakefile.txt by inserting these lines
set(CMAKE_CXX_FLAGS "-fPIC")
set(CMAKE_C_FLAGS "-fPIC")
2.rebuild/reinstall fbthrift(must step)
3.run your command under /fbthrift/thrift/compiler/py
g++ -I /usr/include/python2.7 -I ../../.. -std=c++14 -fpic -shared -o frontend.so compiler.cc -lboost_python -lpython2.7 -L/build/lib -lcompiler_base -lcompiler_ast -lboost_system -lboost_filesystem -lssl -lcrypto
sudo cp frontend.so /usr/local/lib/python2.7/dist-packages/thrift_py-0.9.0-py2.7.egg/thrift_compiler
Any ideas/suggestions would be greatly appreciated.
=================
Complete message of thpp build:
huiji#NoBoDy:~/Downloads/thpp-master/thpp$ ./build.sh
If you don&apos;t have folly or thrift installed, try doing
THPP_NOFB=1 ./build.sh
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/local/bin/gcc
-- Check for working C compiler: /usr/local/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/g++
-- Check for working CXX compiler: /usr/local/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Torch7 in /home/huiji/torch/install
-- Found Folly: /usr/local/include
-- Found Thrift: /usr/local/include
-- Performing Test HAS_NO_AS_NEEDED
-- Performing Test HAS_NO_AS_NEEDED - Success
-- Found Glog: /usr/include
-- Found PythonInterp: /usr/bin/python (found version "2.7.15")
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/huiji/Downloads/thpp-master/thpp/build
[ 5%] Generating thpp/if/gen-cpp2/Tensor_data.h, thpp/if/gen-cpp2/Tensor_types.h, thpp/if/gen-cpp2/Tensor_types.tcc, thpp/if/gen-cpp2/Tensor_constants.h, thpp/if/gen-cpp2/Tensor_data.cpp, thpp/if/gen-cpp2/Tensor_types.cpp, thpp/if/gen-cpp2/Tensor_constants.cpp
Scanning dependencies of target thpp
[ 10%] Building CXX object CMakeFiles/thpp.dir/Storage.cpp.o
In file included from /home/huiji/Downloads/thpp-master/thpp/Storage.cpp:11:0:
/home/huiji/Downloads/thpp-master/thpp/../thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/thpp.dir/build.make:84: recipe for target &apos;CMakeFiles/thpp.dir/Storage.cpp.o&apos; failed
make[2]: *** [CMakeFiles/thpp.dir/Storage.cpp.o] Error 1
CMakeFiles/Makefile2:67: recipe for target &apos;CMakeFiles/thpp.dir/all&apos; failed
make[1]: *** [CMakeFiles/thpp.dir/all] Error 2
Makefile:140: recipe for target &apos;all&apos; failed
make: *** [all] Error 2
Complete message of fblualib build:
huiji#NoBoDy:~/Downloads/fblualib-master/fblualib$ ./build.sh
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/local/bin/gcc
-- Check for working C compiler: /usr/local/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/g++
-- Check for working CXX compiler: /usr/local/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Folly: /usr/local/include
-- Found Glog: /usr/include
-- Found Torch7 in /home/huiji/torch/install
-- Found Folly: /home/huiji/torch/install/include
-- Configuring done
WARNING: Target "fblualib" requests linking to directory "/home/huiji/torch/install/lib". Targets may link only to libraries. CMake is dropping the item.
-- Generating done
-- Build files have been written to: /home/huiji/Downloads/fblualib-master/fblualib/build
Scanning dependencies of target fblualib
[ 20%] Building CXX object CMakeFiles/fblualib.dir/LuaUtils.cpp.o
In file included from /home/huiji/torch/install/include/thpp/Tensor.h:20:0,
from /home/huiji/Downloads/fblualib-master/fblualib/../fblualib/LuaUtils.h:19,
from /home/huiji/Downloads/fblualib-master/fblualib/LuaUtils.cpp:11:
/home/huiji/torch/install/include/thpp/Storage.h:22:10: fatal error: thpp/if/gen-cpp2/Tensor_types.h: no such file or directory
#include <thpp/if/gen-cpp2/Tensor_types.h>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/fblualib.dir/build.make:62: recipe for target &apos;CMakeFiles/fblualib.dir/LuaUtils.cpp.o&apos; failed
make[2]: *** [CMakeFiles/fblualib.dir/LuaUtils.cpp.o] Error 1
CMakeFiles/Makefile2:67: recipe for target &apos;CMakeFiles/fblualib.dir/all&apos; failed
make[1]: *** [CMakeFiles/fblualib.dir/all] Error 2
Makefile:129: recipe for target &apos;all&apos; failed
make: *** [all] Error 2
Use thrift1 and mstch_cpp2 instead. It works for me!
See https://github.com/facebook/fbthrift/issues/271 and $THRIFT_INCLUDE is /usr/local/include/thrift/ in my system.
As one of the above answer mentioned, after building fbthrift successfully, you get bin/thrift1 binary in your build folder. You can then use the output thrift1 with generator mstch_cpp2.
./build/bin/thrift1 --gen mstch_cpp2 --templates ./thrift/compiler/generate/templates --out /tmp/ ./thrift/example/if/chatroom.thrift
Ref https://github.com/facebook/fbthrift/issues/303

How to find OpenCV installed in /usr/local when building ROS node

I am using ROS Kinetic with OpenCV. I created a node that uses CUDA implemented algorithms of OpenCV (which are not available in the ros-kinetic-opencv3 package) so I compiled OpenCV from source with CUDA enabled and installed it in /usr/local.
To test if my /usr/local installation was working as expected (and if my code was correct) I created a program, outside of ROS, with the following CMakeList.txt:
cmake_minimum_required(VERSION 2.8.3)
project(stereo_algorithms_testing)
set(ENV{OpenCV_DIR} "/usr/local")
find_package(OpenCV REQUIRED)
include_directories(include ${OpenCV_INCLUDE_DIRS})
add_executable(stereo_algorithms main.cpp)
target_link_libraries(stereo_algorithms ${OpenCV_LIBS})
When I run cmake ., I get the following output:
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found CUDA: /usr/local/cuda (found suitable exact version "8.0")
-- Found OpenCV: /usr/local (found version "3.2.0")
-- Configuring done
-- Generating done
-- Build files have been written to: /home/degraw/Opencv_testing/stereo_algorithms/test
All is well, and the code runs as expected with no runtime errors.
Now when I use the same code in a ROS node I have the following CMakeList.txt:
cmake_minimum_required(VERSION 2.8.3)
project(depth_calculator)
set(ENV{OpenCV_DIR} "/usr/local")
find_package(OpenCV REQUIRED core highgui calib3d PATHS /usr/local NO_DEFAULT_PATH)
find_package(catkin REQUIRED COMPONENTS cv_bridge image_transport)
catkin_package()
include_directories(include ${OpenCV_INCLUDE_DIRS} ${catkin_INCLUDE_DIRS})
add_executable(double_image_acq src/double_image_acquisition.cpp)
target_link_libraries(double_image_acq ${OpenCV_LIBS} ${catkin_LIBRARIES})
Notice that I explicitly tell cmake to only look for OpenCV in /usr/local.
The output of catkin_make is:
-- Using CATKIN_DEVEL_PREFIX: /home/degraw/catkin_ws/devel
-- Using CMAKE_PREFIX_PATH: /home/degraw/catkin_ws/devel;/usr/local;/opt/ros/kinetic
-- This workspace overlays: /home/degraw/catkin_ws/devel;/opt/ros/kinetic
-- Using PYTHON_EXECUTABLE: /usr/bin/python
-- Using Debian Python package layout
-- Using empy: /usr/bin/empy
-- Using CATKIN_ENABLE_TESTING: ON
-- Call enable_testing()
-- Using CATKIN_TEST_RESULTS_DIR: /home/degraw/catkin_ws/build/test_results
-- Found gtest sources under '/usr/src/gtest': gtests will be built
-- Using Python nosetests: /usr/bin/nosetests-2.7
-- catkin 0.7.6
-- BUILD_SHARED_LIBS is on
-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-- ~~ traversing 2 packages in topological order:
-- ~~ - depth_calculator
-- ~~ - zed_wrapper
-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-- +++ processing catkin package: 'depth_calculator'
-- ==> add_subdirectory(depth_calculator)
-- Found OpenCV: /opt/ros/kinetic (found version "3.2.0") found components: core highgui calib3d
...
...
...
Running command: "make -j4 -l4" in "/home/degraw/catkin_ws/build"
[ 14%] Built target zed_wrapper_gencfg
[ 28%] Linking CXX executable /home/degraw/catkin_ws/devel/lib/depth_calculator/double_image_acq
[ 57%] Built target ZEDWrapper
[ 85%] Built target zed_wrapper_node
CMakeFiles/double_image_acq.dir/src/double_image_acquisition.cpp.o: In function `OpencvDisparityCalculator::callback(boost::shared_ptr<sensor_msgs::Image_<std::allocator<void> > const> const&, boost::shared_ptr<sensor_msgs::Image_<std::allocator<void> > const> const&)':
double_image_acquisition.cpp:(.text._ZN25OpencvDisparityCalculator8callbackERKN5boost10shared_ptrIKN11sensor_msgs6Image_ISaIvEEEEES9_[_ZN25OpencvDisparityCalculator8callbackERKN5boost10shared_ptrIKN11sensor_msgs6Image_ISaIvEEEEES9_]+0x1ad): undefined reference to `cv::cuda::createStereoBM(int, int)'
collect2: error: ld returned 1 exit status
depth_calculator/CMakeFiles/double_image_acq.dir/build.make:175: recipe for target '/home/degraw/catkin_ws/devel/lib/depth_calculator/double_image_acq' failed
make[2]: *** [/home/degraw/catkin_ws/devel/lib/depth_calculator/double_image_acq] Error 1
CMakeFiles/Makefile2:353: recipe for target 'depth_calculator/CMakeFiles/double_image_acq.dir/all' failed
make[1]: *** [depth_calculator/CMakeFiles/double_image_acq.dir/all] Error 2
Makefile:138: recipe for target 'all' failed
make: *** [all] Error 2
Invoking "make -j4 -l4" failed
Obviously it's a linker issue. It finds the wrong OpenCV (the ROS OpenCV) which does not include the libraries for CUDA.
How can I tell catkin_make to find the OpenCV in /usr/local?

An error when install cutorch in Torch7 with LuaRocks install in Ubuntu 14.0

i`m new to lua, and these days i just have installing the torch-7, when i install the cutorch an error happened :
weigq#weigq-Lenovo-G410:~/torch$ luarocks install cutorch
Installing https://raw.githubusercontent.com/torch/rocks/master/cutorch-scm-1.rockspec...
Using https://raw.githubusercontent.com/torch/rocks/master/cutorch-scm-1.rockspec... switching to 'build' mode
正克隆到 'cutorch'...
remote: Counting objects: 203, done.
remote: Compressing objects: 100% (158/158), done.
remote: Total 203 (delta 57), reused 86 (delta 43), pack-reused 0
接收对象中: 100% (203/203), 191.70 KiB | 185.00 KiB/s, done.
处理 delta 中: 100% (57/57), done.
检查连接... 完成。
cmake -E make_directory build && cd build && cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="/home/weigq/torch/install/bin/.." -DCMAKE_INSTALL_PREFIX="/home/weigq/torch/install/lib/luarocks/rocks/cutorch/scm-1" && make -j$(getconf _NPROCESSORS_ONLN) install
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found Torch7 in /home/weigq/torch/install
CMake Error at /usr/share/cmake-2.8/Modules/FindCUDA.cmake:548 (message):
Specify CUDA_TOOLKIT_ROOT_DIR
Call Stack (most recent call first):
CMakeLists.txt:7 (FIND_PACKAGE)
-- Configuring incomplete, errors occurred!
See also "/tmp/luarocks_cutorch-scm-1-8668/cutorch/build/CMakeFiles/CMakeOutput.log".
Error: Build error: Failed building.
i don`t know how to deal with it ?
anyone can help me solve it,thanks!
Make sure You're using NVidia graphic card and do have driver and CUDA toolkit set-up.
$ lspci | grep -i 'vga\|3d\|2d'
Should print the information about video card installed into Your machine.
If it's not NVidia and/or it only supports OpenCL, You could try cltorch (Torch OpenCL backend) or some another lower level framework, which does support OpenCL.
Btw, setting up the CUDA toolkit includes downloading and installing it from the official site and setting up the search paths (accordingly to your installation method). Example from CUDA quick guide:
$ export PATH=/usr/local/cuda-8.0/bin${PATH:+:${PATH}}
$ export LD_LIBRARY_PATH=/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}

Error in installing caffe in Ubuntu 14.04 LTS

Having already required dependencies for caffe installation:
in cmake step, when I use:
cmake ..
I get this error:
-- Python:
-- Interpreter : /home/majid/anaconda/bin/python2.7 (ver..2.7.9)
-- Libraries : /usr/lib/x86_64-linux-gnu/libpython2.7.so (ver 2.7.6)
-- NumPy : /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include (ver 1.9.2)
which in Libraries it has detected wrong path instead of /home/majid/anaconda/lib/libpython2.7.so
I tried to force to use the correct path by:
cmake -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so ..
but after:
make all -j $(nproc)
I am getting a couple of time this warning:
At end of source: warning: routine is both "inline" and "noinline"
in the end it stops by this error:
/usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.8: undefined reference to `TIFFReadRGBAStrip#LIBTIFF_4.0'
collect2: error: ld returned 1 exit status
make[2]: *** [examples/cpp_classification/classification] Error 1
make[1]: *** [examples/CMakeFiles/classification.dir/all] Error 2
make: *** [all] Error 2
while when installing opencv I used this cmake:
cmake -D CMAKE_BUILD_TYPE=RELEASE -D CMAKE_INSTALL_PREFIX=/home/majid/opencv -D PYTHON_EXECUTABLE=/home/majid/anaconda/bin/python2.7 -D PYTHON_INCLUDE_DIR=/home/majid/anaconda/include/python2.7 -D PYTHON_INCLUDE_DIRS=/home/majid/anaconda/include/python2.7 -D PYTHON_INCLUDE_DIR2=/home/majid/anaconda/include/python2.7 -D PYTHON_LIBRARIES=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_PACKAGES_PATH=/home/majid/anaconda/lib/python2.7/site-packages -D BUILD_EXAMPLES=ON -D BUILD_NEW_PYTHON_SUPPORT=ON -D PYTHON2_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so -D PYTHON_NUMPY_INCLUDE_DIRS=/home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include/numpy -D BUILD_opencv_python3=OFF -D BUILD_opencv_python2=ON -D INSTALL_C_EXAMPLES=ON -D INSTALL_PYTHON_EXAMPLES=ON -D WITH_TBB=ON -D WITH_V4L=ON -D BUILD-TIFF=ON -D WITH_OPENGL=ON -D WITH_CUBLAS=ON -D WITH_GTK=ON -D MATLAB_INCLUDE_DIRS=/home/majid/MATLAB/extern/include -D MATLAB_LIBRARY_DIRS=/home/majid/MATLAB/bin -D MATLAB_MEX_SCRIPT=/home/majid/MATLAB/bin -D MATLAB_ROOT_DIR=/home/majid/MATLAB ..
in which it is: LIBTIFF=ON.
after making opencv I set the packages' path by:
export LD_LIBRARY_PATH=/home/majid/opencv/lib
PKG_CONFIG_PATH=$PKG_CONFIG_PATH:/home/majid/opencv/lib/pkgconfig
export PKG_CONFIG_PATH
and also:
sudo /bin/bash -c 'echo "/home/majid/opencv/lib" > /etc/ld.so.conf.d/opencv.conf'
sudo ldconfig
I don't know why I am having this problem from x86-64-linux-gnu while I have the same libopencv-highgui.so in the /home/majid/opencv/lib
I really appreciate it if someone could help me out in this matter.
the result of forced cmake:
cmake -D PYTHON_LIBRARY=/home/majid/anaconda/lib/libpython2.7.so ..
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- system
-- thread
-- Found gflags (include: /usr/local/include, library: /usr/local/lib/libgflags.a)
-- Found glog (include: /usr/local/include, library: /usr/local/lib/libglog.so)
-- Found PROTOBUF Compiler: /usr/local/bin/protoc
-- Found lmdb (include: /usr/local/include, library: /usr/local/lib/liblmdb.so)
-- Found LevelDB (include: /usr/local/include, library: /usr/local/lib/libleveldb.so)
-- Found Snappy (include: /usr/include, library: /usr/lib/libsnappy.so)
-- CUDA detected: 7.0
-- Found cuDNN (include: /usr/local/cuda-7.0/include, library: /usr/local/cuda-7.0/lib64/libcudnn.so)
-- Added CUDA NVCC flags for: sm_21
-- Cuda + Boost 1.55: Applying noinline work around
-- OpenCV found (/usr/share/OpenCV)
-- Found Atlas (include: /usr/include, library: /usr/lib/libatlas.so)
-- Found PythonLibs: /home/majid/anaconda/lib/libpython2.7.so (found suitable version "2.7.6", minimum required is "2.7")
-- NumPy ver. 1.9.2 found (include: /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include)
-- Boost version: 1.55.0
-- Found the following Boost libraries:
-- python
-- Detected Doxygen OUTPUT_DIRECTORY: ./doxygen/
--
-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : <TODO> (Caffe doesn't declare its version in headers)
-- Git : rc2-344-g7e5608f-dirty
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compared-Wno-uninitialized
-- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Build type : Release
--
-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : OFF
-- BUILD_docs : ON
-- CPU_ONLY : OFF
--
-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.55)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 3.0.0)
-- lmdb : Yes (ver. 0.9.14)
-- Snappy : Yes (ver. 1.1.0)
-- LevelDB : Yes (ver. 1.17)
-- OpenCV : Yes (ver. 2.4.8)
-- CUDA : Yes (ver. 7.0)
--
-- NVIDIA CUDA:
-- Target GPU(s) : Auto
-- GPU arch(s) : sm_21
-- cuDNN : Yes
--
-- Python:
-- Interpreter : /home/majid/anaconda/bin/python2.7 (ver. 2.7.9)
-- Libraries : /home/majid/anaconda/lib/libpython2.7.so (ver 2.7.6)
-- NumPy : /home/majid/anaconda/lib/python2.7/site-packages/numpy/core/include (ver 1.9.2)
--
-- Documentaion:
-- Doxygen : /usr/bin/doxygen (1.8.6)
-- config_file : /home/majid/caffe/.Doxyfile
--
-- Install:
-- Install path : /home/majid/caffe/build/install
--
-- Configuring done
-- Generating done
-- Build files have been written to: /home/majid/caffe/build

Compiling OpenCV Source Code for 64 bit (Mac)

I'm having some problems while trying to compile 64 bit OpenCV libraries. This is what I've done so far:
Got the source code using svn
In the opencv I have mkdir build then cd build
cmake -G "Unix Makefiles" -D CMAKE_OSX_ARCHITECTURES=x86_64 -D CMAKE_C_FLAGS=-m64 -D CMAKE_CXX_FLAGS=-m64 ..
This then leaves me with the output (below), which worries me because a number of packages are not found. I have tried disabling the WITH_CUDA flag as suggest in this post Building EmguCV on OSX Snow Leopard but it doesn't seem to help.
-- Extracting svn version, please wait...
-- SVNVERSION: svn:9029
-- checking for module 'libdc1394-2'
-- package 'libdc1394-2' not found
-- checking for module 'libdc1394'
-- package 'libdc1394' not found
-- checking for module 'libavcodec'
-- package 'libavcodec' not found
-- checking for module 'libavformat'
-- package 'libavformat' not found
-- checking for module 'libavutil'
-- package 'libavutil' not found
-- checking for module 'libswscale'
-- package 'libswscale' not found
-- Looking for libavformat/avformat.h
-- Looking for libavformat/avformat.h - not found
-- Looking for ffmpeg/avformat.h
-- Looking for ffmpeg/avformat.h - not found
Traceback (most recent call last):
File "<string>", line 1, in <module>
ImportError: No module named sphinx
--
-- General configuration for OpenCV 2.4.9 =====================================
-- Version control: svn:9029
--
-- Platform:
-- Host: Darwin 11.4.0 i386
-- CMake: 2.8.8
-- CMake generator: Unix Makefiles
-- CMake build tool: /usr/bin/make
-- Configuration: Release
--
-- C/C++:
-- Built as dynamic libs?: YES
-- C++ Compiler: /usr/bin/c++
-- C++ flags (Release): -m64 -O3 -DNDEBUG
-- C++ flags (Debug): -m64 -g
-- C Compiler: /usr/bin/gcc
-- C flags (Release): -m64 -O3 -DNDEBUG
-- C flags (Debug): -m64 -g
-- Linker flags (Release):
-- Linker flags (Debug):
-- Precompiled headers: NO
--
-- OpenCV modules:
-- To be built: core imgproc flann highgui features2d calib3d ml video objdetect contrib nonfree legacy gpu photo python stitching ts videostab
-- Disabled: world
-- Disabled by dependency: -
-- Unavailable: androidcamera java
--
-- GUI:
-- QT 4.x: NO
-- Cocoa: YES
-- OpenGL support: NO
--
-- Media I/O:
-- ZLib: build (ver 1.2.6)
-- JPEG: build (ver 62)
-- PNG: build (ver 1.5.9)
-- TIFF: build (ver 42 - 4.0.1)
-- JPEG 2000: build (ver 1.900.1)
-- OpenEXR: NO
--
-- Video I/O:
-- DC1394 1.x: NO
-- DC1394 2.x: NO
-- FFMPEG: NO
-- codec: NO
-- format: NO
-- util: NO
-- swscale: NO
-- gentoo-style: NO
-- OpenNI: NO
-- OpenNI PrimeSensor Modules: NO
-- PvAPI: NO
-- QuickTime: NO
-- QTKit: YES
--
-- Other third-party libraries:
-- Use IPP: NO
-- Use TBB: NO
-- Use Cuda: NO
-- Use Eigen: NO
-- Use Clp: NO
--
-- Python:
-- Interpreter: /usr/bin/python (ver 2.7.1)
-- Libraries: /usr/lib/libpython2.7.dylib (ver 2.7.1)
-- numpy: /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include (ver 1.5.1)
-- packages path: lib/python2.7/site-packages
--
-- Documentation:
-- Build Documentation: NO
-- Sphinx: NO
-- PdfLaTeX compiler: /usr/texbin/pdflatex
--
-- Tests and samples:
-- Tests: YES
-- Performance tests: YES
-- Examples: NO
--
-- Install path: /usr/local
--
-- cvconfig.h is in: /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build
-- -----------------------------------------------------------------
--
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build
If I then try make -j8 I get something that starts off like this and goes on fo a while:
[ 0%] [ 0%] [ 0%] [ 1%] [ 1%] [ 1%] Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/adler32.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/compress.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/crc32.c.o
Building C object 3rdparty/libpng/CMakeFiles/libpng.dir/pngerror.c.o
Building C object 3rdparty/libpng/CMakeFiles/libpng.dir/png.c.o
Building C object 3rdparty/zlib/CMakeFiles/zlib.dir/deflate.c.o
[ 1%] [ 1%] Building C object 3rdparty/libjasper/CMakeFiles/libjasper.dir/jas_cm.c.o
Building C object 3rdparty/libjpeg/CMakeFiles/libjpeg.dir/jcapimin.c.o
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngerror.c:19:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:45:20: error: stdlib.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:127,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngerror.c:19:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:442:26: error: setjmp.h: No such file or directory
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:450:24: error: time.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.c:14:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:45:20: error: stdlib.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/pngpriv.h:127,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.c:14:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:442:26: error: setjmp.h: No such file or directory
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/libpng/png.h:450:24: error: time.h: No such file or directory
In file included from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/zlib/zlib.h:34,
from /Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/3rdparty/zlib/compress.c:9:
/Users/Dash/Documents/SmartServices/AirLink/ProjectGhost/myOpencv/trunk/opencv/build/3rdparty/zlib/zconf.h:403:48: error: sys/types.h: No such file or directory
INSTRUCTIONS
Download the zip from https://github.com/Itseez/opencv
When you unzip it you should be left with a folder called 'opencv-master', cd into it.
mkdir build
cmake -D CMAKE_BUILD_TYPE=RELEASE -D CMAKE_INSTALL_PREFIX=/usr/local -D BUILD_PYTHON_SUPPORT=ON ..
make
sudo make install

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