compiling with HDF5: unable to link library files (fortran 90) - hyperlink

Question

I am currently try to compile these files using HDF5
I have directly linked and included everything necessary ( I think) but still the compile unable to find the files that is needed
This is my Makefile:
CC = h5cc
FC = h5fc
LD = h5fc
FDEBUG = -std -g -traceback
CFLAGS = -g -O0 -Wall -pedantic
FFLAGS = -g -O0 -Wall -I$(H5DIR)/include -L$(H5DIR)/lib/libhdf5hl_fortran.a
LDFLAGS = -I$(H5DIR)/include -L$(H5DIR)/lib/libhdf5hl_fortran.a
#LDFLAGS = -I$(MKLROOT)/include -L$(MKLROOT) -mkl=sequential
# -opt-block-factor=16 -opt-prefetch=4 \
.SUFFIXES:
.SUFFIXES: .c .f .f90 .F90 .o
OBJS = timing.o \
kinds.o \
rw_matrix.o \
EXE = matmul_omp.exe
all: $(EXE)
$(EXE): $(OBJS) matmul_omp.o
$(LD) $(LDFLAGS) -o $# $^
.f90.o:
-$(RM) -f $*.o $*.mod
$(FC) $(FFLAGS) -c $<
.c.o:
$(CC) $(CFLAGS) -c $<
.PHONEY: clean
clean:
THis is the err:
h5fc -I/curc/tools/x_86_64/rh6/hdf5/1.8.13/szip/2.1/zlib/1.2.8/jpeglib/9a/openmpi/1.8.2/intel/13.0.0/include -L/curc/tools/x_86_64/rh6/hdf5/1.8.13/szip/2.1/zlib/1.2.8/jpeglib/9a/openmpi/1.8.2/intel/13.0.0/lib/libhdf5hl_fortran.a -o matmul_omp.exe timing.o matmul_omp.o
gfortran: /usr/lib64/libhdf5hl_fortran.a: No such file or directory
gfortran: /usr/lib64/libhdf5_hl.a: No such file or directory
gfortran: /usr/lib64/libhdf5_fortran.a: No such file or directory
gfortran: /usr/lib64/libhdf5.a: No such file or directory
As you can see that I directly link libhdf5hl_fortran.a. but i dont know why the error is giving a different directory /usr/lib64/

Answer 1

I think you have a couple of things wrong here.
If you are using h5fc then you shouldn't need to add all the include and lib paths. That is the whole point of the helper applications.
You are adding the paths that have Intel, yet your h5fc has a GNU (gfortran) error.
The gfortran build of HDF5 looks as if it does not have the fortran bindings built.
I would suggest trying the following. Using the full paths (as you have done) but call ifort instead of h5fc:
ifort -I/curc/tools/x_86_64/rh6/hdf5/1.8.13/szip/2.1/zlib/1.2.8/jpeglib/9a/openmpi/1.8.2/intel/13.0.0/include \
-L/curc/tools/x_86_64/rh6/hdf5/1.8.13/szip/2.1/zlib/1.2.8/jpeglib/9a/openmpi/1.8.2/intel/13.0.0/lib/libhdf5hl_fortran.a \
-o matmul_omp.exe timing.o matmul_omp.o