Galago 3.5 Indexing - search-engine

Downloaded Galago 3.5 bin version and tried to index wiki-small.corpus following this guide. Strangely I get a File Not Found Exception for the .index file when trying to run the build index command. This error goes away when I explicitly use the inputPath and indexPath but instead now I get this exception -
Created executor: org.lemurproject.galago.tupleflow.execution.LocalCheckpointedStageExecutor#69107c05
Running without server!
Use --server=true to enable web-based status page.
Stage inputSplit completed with 0 errors.
Mar 14, 2014 3:26:01 PM org.lemurproject.galago.core.parse.UniversalParser process
INFO: Processing split: /Users/nanz/Downloads/wiki-small.corpus
java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at org.lemurproject.galago.core.parse.UniversalParser.process(UniversalParser.java:137)
at org.lemurproject.galago.core.parse.UniversalParser.process(UniversalParser.java:52)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$TupleUnshredder.processTuple(DocumentSplit.java:2033)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$DuplicateEliminator.processTuple(DocumentSplit.java:1989)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$ShreddedBuffer.copyTuples(DocumentSplit.java:1705)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$ShreddedBuffer.copyUntilFileId(DocumentSplit.java:1732)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$ShreddedBuffer.copyUntil(DocumentSplit.java:1740)
at org.lemurproject.galago.core.types.DocumentSplit$FileIdOrder$ShreddedReader.run(DocumentSplit.java:1940)
at org.lemurproject.galago.tupleflow.FileOrderedReader.run(FileOrderedReader.java:76)
at org.lemurproject.galago.tupleflow.execution.LocalCheckpointedStageExecutor$LocalExecutionStatus.run(LocalCheckpointedStageExecutor.java:96)
at java.lang.Thread.run(Thread.java:695)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.lemurproject.galago.core.parse.UniversalParser.constructParserWithSplit(UniversalParser.java:213)
at org.lemurproject.galago.core.parse.UniversalParser.process(UniversalParser.java:132)
... 10 more
Caused by: java.lang.NullPointerException
at org.lemurproject.galago.core.index.KeyValueReader.getManifest(KeyValueReader.java:35)
at org.lemurproject.galago.core.index.corpus.CorpusReader.init(CorpusReader.java:41)
at org.lemurproject.galago.core.index.corpus.CorpusReader.(CorpusReader.java:32)
at org.lemurproject.galago.core.parse.CorpusSplitParser.(CorpusSplitParser.java:33)
... 16 more
Stage parsePostings completed with 1 errors.
java.lang.Exception: java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
Exception in thread "main" java.util.concurrent.ExecutionException: Stage threw an exception:
at org.lemurproject.galago.tupleflow.execution.JobExecutor$JobExecutionStatus.waitForStages(JobExecutor.java:1062)
at org.lemurproject.galago.tupleflow.execution.JobExecutor$JobExecutionStatus.run(JobExecutor.java:971)
at org.lemurproject.galago.tupleflow.execution.JobExecutor.runWithoutServer(JobExecutor.java:1122)
at org.lemurproject.galago.tupleflow.execution.JobExecutor.runLocally(JobExecutor.java:1177)
at org.lemurproject.galago.core.tools.AppFunction.runTupleFlowJob(AppFunction.java:101)
at org.lemurproject.galago.core.tools.apps.BuildIndex.run(BuildIndex.java:789)
at org.lemurproject.galago.core.tools.AppFunction.run(AppFunction.java:55)
at org.lemurproject.galago.core.tools.App.run(App.java:82)
at org.lemurproject.galago.core.tools.App.run(App.java:73)
at org.lemurproject.galago.core.tools.App.main(App.java:69)
Caused by: java.lang.Exception: java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at org.lemurproject.galago.tupleflow.execution.LocalCheckpointedStageExecutor$LocalExecutionStatus.run(LocalCheckpointedStageExecutor.java:99)
at java.lang.Thread.run(Thread.java:695)
I tried building the source code and I got the same results in that case as well. Can somebody point out where I am going wrong ? Hardly anybody seems to have faced this issue so there's not much I get via a simple Google search.

Solved. Just in case someone else faces this issue, one of my friends figured it out that Galago would not work directly on the wiki-small.corpus file as it tries to look for corpus.keys which do not exist for this. Just replace this .corpus file instead with the directory of documents and everything will work just fine. Do specify the indexPath and inputPath parameters explicitly. Use "galago build help" to view the exact syntax. Cheers.

I know this is late, but the wiki-small.corpus file from the textbook's website was built with an old version of galago, namely the 1.0 series, which is preserved in this google code repository: https://code.google.com/p/galagosearch/
The newer releases of Galago (2.0 ... 3.5 ...3.7) are part of newer development under the Lemur Project on sourceforge, and the corpus format has since changed. If you had a corpus file built with Galago 3.5, your commands should have worked.

Related

Jenkins fails when starting in WebSphere: NullPointerException in WebApp.getInitParameter()

I have WebSphere 8.5.5.9 and want to run Jenkins on it, because of that, I have installed jenkins.war (the last version 2.19.2), but when I try to start it, I get the error bellow and the application(Jenkins) doesn't start.
OS: Red Hat Enterprise Linux Server release 6.7 (Santiago) - 64 bits
[11/14/16 14:34:55:824 EST] 0000007c BootFailure E Failed to initialize Jenkins
hudson.util.HudsonFailedToLoad: java.lang.NullPointerException
at hudson.WebAppMain$3.run(WebAppMain.java:248)
Caused by: java.lang.NullPointerException
at com.ibm.ws.webcontainer.webapp.WebApp.getInitParameter(WebApp.java:2791)
at com.ibm.wsspi.webcontainer.facade.ServletContextFacade.getInitParameter(ServletContextFacade.java:264)
at jenkins.util.SystemProperties.tryGetValueFromContext(SystemProperties.java:322)
at jenkins.util.SystemProperties.getString(SystemProperties.java:121)
at jenkins.util.SystemProperties.getInteger(SystemProperties.java:258)
at jenkins.model.Jenkins.<init>(Jenkins.java:599)
at hudson.model.Hudson.<init>(Hudson.java:85)
at hudson.model.Hudson.<init>(Hudson.java:81)
at hudson.WebAppMain$3.run(WebAppMain.java:231)
Does somebody have any idea what could be the rouse cause?
Thanks
Looking into other log from WebSphere I found an erro like this:
restricted programmatic session cookie
looking new solutions to this new error, I found a solution:
Just remove on item from programmatic session cookie configuration
Cookie Domain:*
Cookie Name: "JSESSIONID"
Cookie Path: /
from:
Security > Global security > Programmatic session cookie configuration.
After that, I could start Jenkins with success.

Cannot create project when using cloud dataflow plugin for Eclipse

I want to try setup the development environment on Windows with Eclipse. But failed at the final step after successfully setting project id and gs bucket. The errors seems related to network (I have set proxy in Eclipse), I guess Maven need to set proxy, but how? Can someone confirm it? Thanks.
"Error encountered when trying to create project"
java.lang.reflect.InvocationTargetException
at org.eclipse.jface.operation.ModalContext.run(ModalContext.java:423)
at org.eclipse.jface.wizard.WizardDialog.run(WizardDialog.java:1059)
at com.google.cloud.dataflow.eclipse.ui.wizard.NewDataflowProjectWizard.performFinish(NewDataflowProjectWizard.java:50)
at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:853)
at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:438)
at org.eclipse.jface.dialogs.Dialog$2.widgetSelected(Dialog.java:619)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:248)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4353)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1061)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4172)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3761)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:832)
at org.eclipse.jface.window.Window.open(Window.java:808)
at org.eclipse.ui.actions.NewProjectAction.run(NewProjectAction.java:117)
at org.eclipse.jface.action.Action.runWithEvent(Action.java:519)
at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:595)
at org.eclipse.jface.action.ActionContributionItem.access$2(ActionContributionItem.java:511)
at org.eclipse.jface.action.ActionContributionItem$5.handleEvent(ActionContributionItem.java:420)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4353)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1061)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4172)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3761)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$9.run(PartRenderingEngine.java:1151)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1032)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:148)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:636)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:579)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:150)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:135)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:380)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:235)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:648)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:603)
at org.eclipse.equinox.launcher.Main.run(Main.java:1465)
Caused by: java.lang.IllegalStateException: org.eclipse.core.runtime.CoreException: Could not resolve artifact com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples:pom:LATEST
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.run(DataflowProjectCreator.java:207)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:122)
Caused by: org.eclipse.core.runtime.CoreException: Could not resolve artifact com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples:pom:LATEST
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:776)
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:1)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.executeBare(MavenExecutionContext.java:176)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:151)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:99)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:743)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:720)
at com.google.cloud.dataflow.eclipse.core.project.DataflowArtifactRetriever.archetypePom(DataflowArtifactRetriever.java:54)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.defaultArchetypeVersions(DataflowProjectCreator.java:250)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.run(DataflowProjectCreator.java:204)
... 1 more
"Couldn't get archetype versions to use as default"
org.eclipse.core.runtime.CoreException: Could not resolve artifact com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples:pom:LATEST
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:776)
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:1)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.executeBare(MavenExecutionContext.java:176)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:151)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:99)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:743)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:720)
at com.google.cloud.dataflow.eclipse.core.project.DataflowArtifactRetriever.archetypePom(DataflowArtifactRetriever.java:54)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.defaultArchetypeVersions(DataflowProjectCreator.java:250)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.run(DataflowProjectCreator.java:204)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:122)
Contains: Failed to resolve version for com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples:pom:LATEST: Could not find metadata com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples/maven-metadata.xml in local (C:\Users\ztang16\.m2\repository)
org.eclipse.aether.resolution.VersionResolutionException: Failed to resolve version for com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples:pom:LATEST: Could not find metadata com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples/maven-metadata.xml in local (C:\Users\ztang16\.m2\repository)
at org.apache.maven.repository.internal.DefaultVersionResolver.resolveVersion(DefaultVersionResolver.java:313)
at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:302)
at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:246)
at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:223)
at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveArtifact(DefaultRepositorySystem.java:294)
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:753)
at org.eclipse.m2e.core.internal.embedder.MavenImpl$5.call(MavenImpl.java:1)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.executeBare(MavenExecutionContext.java:176)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:151)
at org.eclipse.m2e.core.internal.embedder.MavenExecutionContext.execute(MavenExecutionContext.java:99)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:743)
at org.eclipse.m2e.core.internal.embedder.MavenImpl.resolve(MavenImpl.java:720)
at com.google.cloud.dataflow.eclipse.core.project.DataflowArtifactRetriever.archetypePom(DataflowArtifactRetriever.java:54)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.defaultArchetypeVersions(DataflowProjectCreator.java:250)
at com.google.cloud.dataflow.eclipse.core.project.DataflowProjectCreator.run(DataflowProjectCreator.java:204)
at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:122)
Caused by: org.eclipse.aether.transfer.MetadataNotFoundException: Could not find metadata com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples/maven-metadata.xml in local (C:\Users\ztang16\.m2\repository)
at org.eclipse.aether.internal.impl.DefaultMetadataResolver.resolve(DefaultMetadataResolver.java:247)
at org.eclipse.aether.internal.impl.DefaultMetadataResolver.resolveMetadata(DefaultMetadataResolver.java:205)
at org.apache.maven.repository.internal.DefaultVersionResolver.resolveVersion(DefaultVersionResolver.java:250)
... 15 more
You seem to be hitting an issue when resolving the latest version of our Maven archetype for the examples project. The most inner exception seems to be:
org.eclipse.aether.transfer.MetadataNotFoundException:
Could not find metadata com.google.cloud.dataflow:google-cloud-dataflow-java-archetypes-examples/maven-metadata.xml
in local (C:\Users\YOUR-USERNAME\.m2\repository)
This indicates a problem in your local repository.
We have not seen this specific error before, but tangentially related problems have been resolved by manually deleting the following directory on your local machine and retrying.
C:\Users\YOUR-USERNAME\.m2\repository\com\google\cloud\dataflow\dataflow:google-cloud-dataflow-java-archetypes-examples
This would force Maven to reinitialize that part of the local repository, and perhaps recreate the missing metadata file.
That said, we have slightly changed how our Eclipse plugin interacts with the m2e plugin. The new code doesn't take this path through m2e at all. It is quite likely that this would be a non-issue with an updated code. We tentatively plan to release a new version next week, which would contain this change.
Now, there also could be an issue with a HTTP proxy configuration in your environment. I found this StackOverflow question, which explains how to configure advanced options of the M2Eclipse plugin, including the proxy settings. Dataflow Eclipse plugin is built on top of M2Eclipse and I would expect those setting to apply automatically.

Sunspot Solr core initialization failure

When I run my tests, most of them fail with the following error.
Failure/Error: let(:user){ FactoryGirl.create(:user) }
RSolr::Error::Http:
RSolr::Error::Http - 500 Internal Server Error
Error: {msg=SolrCore 'test' is not available due to init failure: Error opening new searcher,trace=org.apache.solr.common.SolrException: SolrCore 'test' is not available due to init failure: Error opening new searcher
at org.apache.solr.core.CoreContainer.getCore(CoreContainer.java:745)
at org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:299)
at org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:207)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1419)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1075)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:384)
URI: http://localhost:8981/solr/test/update?wt=ruby
Request Headers: {"Content-Type"=>"text/xml"}
Request Data: "<?xml version=\"1.0\" encoding=\"UTF-8\"?><add><doc><field name=\"id\">User 13497</field><field name=\"type\">User</field><field name=\"type\">ActiveRecord::Base</field><field name=\"class_name\">User</field><field name=\"phone_number_text\">+11111111200</field><field name=\"name_text\">111.111.1200</field></doc></add>"
Development is working fine. I thought it may be a corrupt test index so did:
$ rm -rf solr/data/test/
$ rm -rf solr/test/
That didn't help. Looking at the development admin page: http://localhost:8982/solr/#/ I don't see any warnings or errors.
When I go to the test admin page:
http://localhost:8981/solr/#/
SolrCore Initialization Failures
development: org.apache.solr.common.SolrException:org.apache.solr.common.SolrException: Error opening new searcher
default: org.apache.solr.common.SolrException:org.apache.solr.common.SolrException: Error opening new searcher
test: org.apache.solr.common.SolrException:org.apache.solr.common.SolrException: Error opening new searcher
In the logs for the test admin site I see:
null:org.apache.solr.common.SolrException: SolrCore 'test' is not available due to init failure: Error opening new searcher
at org.apache.solr.core.CoreContainer.getCore(CoreContainer.java:745)
at org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:299)
at org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:207)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1419)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1075)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:384)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1009)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:255)
at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:154)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
at org.eclipse.jetty.server.Server.handle(Server.java:368)
at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489)
at org.eclipse.jetty.server.BlockingHttpConnection.handleRequest(BlockingHttpConnection.java:53)
at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:953)
at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1014)
at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:861)
at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240)
at org.eclipse.jetty.server.BlockingHttpConnection.handle(BlockingHttpConnection.java:72)
at org.eclipse.jetty.server.bio.SocketConnector$ConnectorEndPoint.run(SocketConnector.java:264)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.solr.common.SolrException: Error opening new searcher
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:873)
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:646)
at org.apache.solr.core.CoreContainer.create(CoreContainer.java:491)
at org.apache.solr.core.CoreContainer$1.call(CoreContainer.java:255)
at org.apache.solr.core.CoreContainer$1.call(CoreContainer.java:249)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
... 1 more
Caused by: org.apache.solr.common.SolrException: Error opening new searcher
at org.apache.solr.core.SolrCore.openNewSearcher(SolrCore.java:1565)
at org.apache.solr.core.SolrCore.getSearcher(SolrCore.java:1677)
at org.apache.solr.core.SolrCore.<init>(SolrCore.java:845)
... 8 more
Caused by: org.apache.lucene.store.LockObtainFailedException: Lock obtain timed out: NativeFSLock#/Users/pramod/workspace/merlin/solr/test/data/index/write.lock
at org.apache.lucene.store.Lock.obtain(Lock.java:89)
at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:753)
at org.apache.solr.update.SolrIndexWriter.<init>(SolrIndexWriter.java:77)
at org.apache.solr.update.SolrIndexWriter.create(SolrIndexWriter.java:64)
at org.apache.solr.update.DefaultSolrCoreState.createMainIndexWriter(DefaultSolrCoreState.java:279)
at org.apache.solr.update.DefaultSolrCoreState.getIndexWriter(DefaultSolrCoreState.java:111)
at org.apache.solr.core.SolrCore.openNewSearcher(SolrCore.java:1528)
... 10 more
So my best guess is that something is wrong with how the write locks are being created/deleted. I checked solr/conf/solrconfig.xml and I had the following (other stackoverflow posts seem to say this was necessary):
<unlockOnStartup>true</unlockOnStartup>
I also rebooting my computer. However, it's still not working. Any suggestions on how to fix this? Thanks!
System info:
Mac OS X 10.11 El Capitan
Sunspot 2.2.0
ruby 2.2.2
rails 4.2.1
solr 4.10.2
I upgraded solr version from the default that comes with sunspot to 4.10.2 to match my production environment. This seems to be the action that screwed everything up.
------------PARTIAL WORKAROUND------------
In my solr/conf/solrconfig.xml I added the following:
<lockType>simple</lockType>
right above <unlockOnStartup>true</unlockOnStartup>
Restart the solr instance and it resolves the issue that time.
It seems that NativeFSLockFactory (the default that Solr uses) causes issues (http://wiki.apache.org/lucene-java/AvailableLockFactories)
However if I stop the Solr instance and then try to start it again, I get a different exception now:
Caused by: java.nio.file.NoSuchFileException: /solr/test/data/index/_5p.si
As a workaround I do
$ rm -rf solr/data/test/
$ rm -rf solr/test/
Whenever I close the solr instance or start it. That seems to solve the issue for now. I still don't understand what's going wrong.

Flume NullPointerExceptions on checkpoint

I've setup a file to file source/sink , just as a test of basic flume functionality.
Im currently using the "exec" source, with the command being "tail -F mytmpfile".
In my script, I continuously echo "....." >> mytmpfile , so that the tail command constitutes a stream.
However, I've started seeing the following exception in the flume logs:
java.lang. IllegalStateException: Channel closed [channel=c1]. Due to
java.lang.NullPointerException: null
at org.apache.flume.channel.file.FileChannel.createTransaction(FileChannel.java:353)
at org.apache.flume.channel.BasicChannelSemantics.getTransaction(BasicChannelSemantics.java:122)
at org.apache.flume.sink.RollingFileSink.process(RollingFileSink.java:183)
at org.apache.flume.sink.DefaultSinkProcessor.process(DefaultSinkProcessor.java:68)
at org.apache.flume.SinkRunner$PollingRunner.run(SinkRunner.java:147)
at java.lang.Thread.run(Thread.java:662) Caused by: java.lang.NullPointerException
at org.apache.flume.channel.file.Log.writeCheckpoint(Log.java:895)
at org.apache.flume.channel.file.Log.replay(Log.java:406)
at org.apache.flume.channel.file.FileChannel.start(FileChannel.java:303)
at org.apache.flume.lifecycle.LifecycleSupervisor$MonitorRunnable.run(LifecycleSupervisor.java:236)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439)
at java.util.concurrent.FutureTask$Sync.innerRunAndReset(FutureTask.java:317)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:150)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$101(ScheduledThreadPoolExecutor.java:98)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.runPeriodic(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:204)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
... 1 more
Any thoughts on where this NullPointerException is coming from? It appears from scanning the code that maybe it related to a missing folder or directory. But I cant find the exact line on the git hub branches.
This is using apache-flume-1.3.1.23-...
In the past I've had problems with file channels, and they've normally boiled down to two problems:
1) If you're running multiple agents on the same box, make sure you configure them to have separate dataDirs and checkpointDir.
2) On Linux boxes, check that your tmpfs isn't near its capacity. If it's getting full, flume will complain. Try stopping the flume agent, unmount tmpfs, enlarge it, remount and restart the agent.

javax.servlet.ServletException: Filter [sitemesh]: could not be initialized when deploying grails 2.11 app to WebSphere 8.5 liberty profile?

When I try and deploy my grails application to a WebSphere 8.5 liberty profile server I get the following error message.
Error Message: javax.servlet.ServletException: Filter [sitemesh]: could not be initialized
I've set up a parent last class loading policy for my application. The same war file deploys with no problems to tomcat located on the same server. Any ideas of what could be causing this and how to work around it? I've pasted the full stacktrace below.
Error Page Exception
SRVE0260E: The server cannot use the error page specified for your application to handle the Original Exception printed below.
Original Exception:
Error Message: javax.servlet.ServletException: Filter [sitemesh]: could not be initialized
Error Code: 500
Target Servlet: com.ibm.ws.webcontainer.extension.DefaultExtensionProcessor
Error Stack:
com.opensymphony.module.sitemesh.factory.FactoryException: Could not initialize DecoratorMapper : org.codehaus.groovy.grails.web.sitemesh.GrailsLayoutDecoratorMapper: org.springframework.beans.factory.NoSuchBeanDefinitionException: No bean named 'groovyPageLayoutFinder' is defined
at com.opensymphony.module.sitemesh.factory.BaseFactory.pushDecoratorMapper(BaseFactory.java:117)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadDecoratorMappers(Grails5535Factory.java:231)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:98)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.(Grails5535Factory.java:66)
at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.init(GrailsPageFilter.java:83)
at com.ibm.ws.webcontainer.filter.FilterInstanceWrapper.init(FilterInstanceWrapper.java:142)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager._loadFilter(WebAppFilterManager.java:579)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.loadFilter(WebAppFilterManager.java:480)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterInstanceWrapper(WebAppFilterManager.java:299)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterChain(WebAppFilterManager.java:372)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.doFilter(WebAppFilterManager.java:903)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.invokeFilters(WebAppFilterManager.java:1036)
at com.ibm.ws.webcontainer.webapp.WebApp.handleRequest(WebApp.java:4173)
at com.ibm.ws.webcontainer.webapp.WebGroup.handleRequest(WebGroup.java:302)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost.handleRequest(DynamicVirtualHost.java:296)
at com.ibm.ws.webcontainer.WebContainer.handleRequest(WebContainer.java:1006)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost$1.run(DynamicVirtualHost.java:253)
at com.ibm.ws.http.dispatcher.internal.channel.HttpDispatcherLink$TaskWrapper.run(HttpDispatcherLink.java:457)
at com.ibm.ws.threading.internal.Worker.executeWork(Worker.java:398)
at com.ibm.ws.threading.internal.Worker.run(Worker.java:380)
at java.lang.Thread.run(Thread.java:722)
Root cause:
org.springframework.beans.factory.NoSuchBeanDefinitionException: No bean named 'groovyPageLayoutFinder' is defined
at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeanDefinition(DefaultListableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractBeanFactory.getMergedLocalBeanDefinition(AbstractBeanFactory.java:1095)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1102)
at org.codehaus.groovy.grails.web.sitemesh.GrailsLayoutDecoratorMapper.init(GrailsLayoutDecoratorMapper.java:48)
at com.opensymphony.module.sitemesh.factory.BaseFactory.pushDecoratorMapper(BaseFactory.java:110)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadDecoratorMappers(Grails5535Factory.java:231)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:98)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.(Grails5535Factory.java:66)
at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.init(GrailsPageFilter.java:83)
at com.ibm.ws.webcontainer.filter.FilterInstanceWrapper.init(FilterInstanceWrapper.java:142)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager._loadFilter(WebAppFilterManager.java:579)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.loadFilter(WebAppFilterManager.java:480)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterInstanceWrapper(WebAppFilterManager.java:299)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterChain(WebAppFilterManager.java:372)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.doFilter(WebAppFilterManager.java:903)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.invokeFilters(WebAppFilterManager.java:1036)
at com.ibm.ws.webcontainer.webapp.WebApp.handleRequest(WebApp.java:4173)
at com.ibm.ws.webcontainer.webapp.WebGroup.handleRequest(WebGroup.java:302)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost.handleRequest(DynamicVirtualHost.java:296)
at com.ibm.ws.webcontainer.WebContainer.handleRequest(WebContainer.java:1006)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost$1.run(DynamicVirtualHost.java:253)
at com.ibm.ws.http.dispatcher.internal.channel.HttpDispatcherLink$TaskWrapper.run(HttpDispatcherLink.java:457)
at com.ibm.ws.threading.internal.Worker.executeWork(Worker.java:398)
at com.ibm.ws.threading.internal.Worker.run(Worker.java:380)
at java.lang.Thread.run(Thread.java:722)
Error Page Exception:
Error Message: javax.servlet.ServletException: Filter [sitemesh]: could not be initialized
Error Code: 0
Target Servlet:
Error Stack:
com.opensymphony.module.sitemesh.factory.FactoryException: Could not initialize DecoratorMapper : org.codehaus.groovy.grails.web.sitemesh.GrailsLayoutDecoratorMapper: org.springframework.beans.factory.NoSuchBeanDefinitionException: No bean named 'groovyPageLayoutFinder' is defined
at com.opensymphony.module.sitemesh.factory.BaseFactory.pushDecoratorMapper(BaseFactory.java:117)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadDecoratorMappers(Grails5535Factory.java:231)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:98)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.(Grails5535Factory.java:66)
at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.init(GrailsPageFilter.java:83)
at com.ibm.ws.webcontainer.filter.FilterInstanceWrapper.init(FilterInstanceWrapper.java:142)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager._loadFilter(WebAppFilterManager.java:579)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.loadFilter(WebAppFilterManager.java:480)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterInstanceWrapper(WebAppFilterManager.java:299)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterChain(WebAppFilterManager.java:372)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.doFilter(WebAppFilterManager.java:906)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.invokeFilters(WebAppFilterManager.java:1036)
at com.ibm.ws.webcontainer.webapp.WebAppRequestDispatcher.dispatch(WebAppRequestDispatcher.java:1383)
at com.ibm.ws.webcontainer.webapp.WebAppRequestDispatcher.forward(WebAppRequestDispatcher.java:191)
at com.ibm.ws.webcontainer.webapp.WebApp.sendError(WebApp.java:3650)
at com.ibm.ws.webcontainer.webapp.WebApp.handleException(WebApp.java:4203)
at com.ibm.ws.webcontainer.webapp.WebApp.handleRequest(WebApp.java:4184)
at com.ibm.ws.webcontainer.webapp.WebGroup.handleRequest(WebGroup.java:302)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost.handleRequest(DynamicVirtualHost.java:296)
at com.ibm.ws.webcontainer.WebContainer.handleRequest(WebContainer.java:1006)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost$1.run(DynamicVirtualHost.java:253)
at com.ibm.ws.http.dispatcher.internal.channel.HttpDispatcherLink$TaskWrapper.run(HttpDispatcherLink.java:457)
at com.ibm.ws.threading.internal.Worker.executeWork(Worker.java:398)
at com.ibm.ws.threading.internal.Worker.run(Worker.java:380)
at java.lang.Thread.run(Thread.java:722)
Root cause:
org.springframework.beans.factory.NoSuchBeanDefinitionException: No bean named 'groovyPageLayoutFinder' is defined
at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeanDefinition(DefaultListableBeanFactory.java:553)
at org.springframework.beans.factory.support.AbstractBeanFactory.getMergedLocalBeanDefinition(AbstractBeanFactory.java:1095)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:277)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.context.support.AbstractApplicationContext.getBean(AbstractApplicationContext.java:1102)
at org.codehaus.groovy.grails.web.sitemesh.GrailsLayoutDecoratorMapper.init(GrailsLayoutDecoratorMapper.java:48)
at com.opensymphony.module.sitemesh.factory.BaseFactory.pushDecoratorMapper(BaseFactory.java:110)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadDecoratorMappers(Grails5535Factory.java:231)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.loadConfig(Grails5535Factory.java:98)
at org.codehaus.groovy.grails.web.sitemesh.Grails5535Factory.(Grails5535Factory.java:66)
at org.codehaus.groovy.grails.web.sitemesh.GrailsPageFilter.init(GrailsPageFilter.java:83)
at com.ibm.ws.webcontainer.filter.FilterInstanceWrapper.init(FilterInstanceWrapper.java:142)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager._loadFilter(WebAppFilterManager.java:579)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.loadFilter(WebAppFilterManager.java:480)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterInstanceWrapper(WebAppFilterManager.java:299)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.getFilterChain(WebAppFilterManager.java:372)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.doFilter(WebAppFilterManager.java:906)
at com.ibm.ws.webcontainer.filter.WebAppFilterManager.invokeFilters(WebAppFilterManager.java:1036)
at com.ibm.ws.webcontainer.webapp.WebAppRequestDispatcher.dispatch(WebAppRequestDispatcher.java:1383)
at com.ibm.ws.webcontainer.webapp.WebAppRequestDispatcher.forward(WebAppRequestDispatcher.java:191)
at com.ibm.ws.webcontainer.webapp.WebApp.sendError(WebApp.java:3650)
at com.ibm.ws.webcontainer.webapp.WebApp.handleException(WebApp.java:4203)
at com.ibm.ws.webcontainer.webapp.WebApp.handleRequest(WebApp.java:4184)
at com.ibm.ws.webcontainer.webapp.WebGroup.handleRequest(WebGroup.java:302)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost.handleRequest(DynamicVirtualHost.java:296)
at com.ibm.ws.webcontainer.WebContainer.handleRequest(WebContainer.java:1006)
at com.ibm.ws.webcontainer.osgi.DynamicVirtualHost$1.run(DynamicVirtualHost.java:253)
at com.ibm.ws.http.dispatcher.internal.channel.HttpDispatcherLink$TaskWrapper.run(HttpDispatcherLink.java:457)
at com.ibm.ws.threading.internal.Worker.executeWork(Worker.java:398)
at com.ibm.ws.threading.internal.Worker.run(Worker.java:380)
at java.lang.Thread.run(Thread.java:722)
WebSphere 8.5 Liberty Profile does not expand WARs upon deployment, and surprisingly quite a few web applications heavily depend on the feature. That's what has led to your case.
I'm pretty sure you deployed the Grails web application as a WAR.
The solution is quite simple - deploy the web application expanded and the issue goes away.
To prove my thought I ran the sample from 2.3 Creating an Application. When I deployed it, the error message you faced was indeed displayed in the browser and the logs.
jacek:~/sandbox/helloworld
$ cp target/helloworld-0.1.war ~/apps/wlp/usr/servers/libertyGrails/dropins/
What you overlooked though was the line in the logs when it asked whether the web archive is expanded.
Caused by: java.io.FileNotFoundException: ServletContext resource
[/WEB-INF/grails-app/i18n/messages.properties] cannot be resolved to
absolute file path - web application archive not expanded? ... 20
more
I redeployed the web application (a mere rm with unzip -d afterwards), and the welcome page displayed properly.
jacek:~/sandbox/helloworld
$ rm ~/apps/wlp/usr/servers/libertyGrails/dropins/helloworld-0.1.war
jacek:~/sandbox/helloworld
$ unzip -d ~/apps/wlp/usr/servers/libertyGrails/dropins/helloworld-0.1.war target/helloworld-0.1.war
jacek:~/sandbox/helloworld
$ open http://localhost:9080/helloworld-0.1

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