[This doesn't really feel like a StackOverflow question to me, but the Google Group explicitly redirected me here.]
I am attempting to run Neo4j on Arch Linux, with a spectacular lack of success. Running bin/neo4j console times out. I am using neo4j-community-1.9.5. All of this information is from running it for the first time immediately after untarring.
Output to the console:
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled
2013-12-07 00:00:02.698+0000 DEBUG [API] You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
2013-12-07 00:00:03.225+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
16:00:03.687 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4d9ecb' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:112)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#1394a8d' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:149)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 10 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:72)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:301)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 13 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:159)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:172)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:678)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:703)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:68)
... 15 more
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#6d3bea' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#183608e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:113)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 9 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#12d3734' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:404)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:318)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:196)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:86)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:299)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:223)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 17 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 20 more
2013-12-07 00:02:15.217+0000 DEBUG [API] Failed to start database.
2013-12-07 00:02:15.221+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204) ~[neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-1.9.5.jar:1.9.5]
2013-12-07 00:02:15.225+0000 DEBUG [API] Failed to start Neo Server on port [7474]
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled
2013-12-07 00:00:02.698+0000 DEBUG [API] You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
2013-12-07 00:00:03.225+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
16:00:03.687 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4d9ecb' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:112)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#1394a8d' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:149)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 10 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:72)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:301)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 13 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:159)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:172)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:678)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:703)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:68)
... 15 more
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#6d3bea' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#183608e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:113)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 9 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#12d3734' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:404)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:318)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:196)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:86)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:299)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:223)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 17 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 20 more
2013-12-07 00:02:15.217+0000 DEBUG [API] Failed to start database.
2013-12-07 00:02:15.221+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204) ~[neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-1.9.5.jar:1.9.5]
2013-12-07 00:02:15.225+0000 DEBUG [API] Failed to start Neo Server on port [7474]
Contents of the log file:
Dec 06, 2013 4:00:01 PM org.neo4j.server.logging.Logger log
WARNING: You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
Dec 06, 2013 4:00:03 PM org.neo4j.server.logging.Logger log
INFO: Setting startup timeout to: 120000ms based on -1
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE: Failed to start database.
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE:
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE: Failed to start Neo Server on port [7474]
Java version information:
java version "1.7.0_45"
OpenJDK Runtime Environment (IcedTea 2.4.3) (ArchLinux build 7.u45_2.4.3-1-i686)
OpenJDK Server VM (build 24.45-b08, mixed mode)
Does anyone have any idea what's going on here? Or where I could dig for more information? Or what I could do instead that might work?
Neo4j is currently only supported on Oracle JDK, you're running on OpenJDK.
Also make sure your settings for number of files is correct, see http://docs.neo4j.org/chunked/stable/configuration-linux-notes.html#_setting_the_number_of_open_files.
Check as well if you got enough permissions for Neo4j to write to the data/graph.db folder.
I reverted to version 1.8.3, the second to latest stable. That version works fine and is sufficient to my purpose. Problem undiagnosed, but resolved enough.
Related
today I´ve updated my Neo4j Server (running on Ubuntu) from version 3.1.0 to 3.1.3! Everything works so far, so good.
After restarting my server, it crashes instantly. This happens everytime when I start/restart the server...
This is the part from the error log neo4.log
2017-05-01 15:18:30.896+0000 INFO Starting...
2017-05-01 15:18:31.950+0000 INFO Bolt enabled on localhost:7687.
2017-05-01 15:18:35.181+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#486c3088' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#486c3088' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#486c3088' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:227)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:91)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:68)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#486c3088' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:443)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:199)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, /var/lib/neo4j/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:193)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:124)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:57)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.proc.Procedures#78b283fb' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:443)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:189)
... 9 more
Caused by: org.neo4j.kernel.api.exceptions.ProcedureException: Unable to register procedure, because the name `apoc.algo.betweenness` is already in use.
at org.neo4j.kernel.impl.proc.ProcedureRegistry.register(ProcedureRegistry.java:81)
at org.neo4j.kernel.impl.proc.Procedures.register(Procedures.java:103)
at org.neo4j.kernel.impl.proc.Procedures.register(Procedures.java:76)
at org.neo4j.kernel.impl.proc.Procedures.start(Procedures.java:209)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
... 11 more
nohup: ignoring input
2017-05-01 15:19:58.689+0000 INFO Starting...
2017-05-01 15:19:59.725+0000 INFO Bolt enabled on localhost:7687.
2017-05-01 15:20:01.504+0000 ERROR Cannot register procedure AssertSchemaProcedure org.neo4j.kernel.api.proc.ProcedureSignature$Builder.mode(Lorg/neo4j/procedure/Mode;)Lorg/neo4j/kernel/api/proc/ProcedureSignature$Builder;
java.lang.NoSuchMethodError: org.neo4j.kernel.api.proc.ProcedureSignature$Builder.mode(Lorg/neo4j/procedure/Mode;)Lorg/neo4j/kernel/api/proc/ProcedureSignature$Builder;
at apoc.schema.AssertSchemaProcedure.signature(AssertSchemaProcedure.java:154)
at org.neo4j.kernel.impl.proc.ProcedureRegistry.register(ProcedureRegistry.java:53)
at org.neo4j.kernel.impl.proc.Procedures.register(Procedures.java:103)
at org.neo4j.kernel.impl.proc.Procedures.register(Procedures.java:76)
at apoc.ApocKernelExtensionFactory$ApocLifecycle.registerCustomProcedures(ApocKernelExtensionFactory.java:79)
at apoc.ApocKernelExtensionFactory$ApocLifecycle.start(ApocKernelExtensionFactory.java:67)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:86)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:189)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:124)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:57)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:199)
Does anyone had this problem after updating Neo4j or can help me with "understanding" that error log?
Thanks in advance ;)
UPDATE
When I start Neo4j I´ll get this message:
Starting Neo4j.
Started neo4j (pid 28724). By default, it is available at http://localhost:7474/
/usr/share/neo4j/bin/neo4j: line 176: /usr/share/neo4j/logs /var/log/neo4j/neo4j.log: No such file or directory
There may be a short delay until the server is ready.
See /usr/share/neo4j/logs /var/log/neo4j/neo4j.log for current status.
I´ve highlighted the 'suspect' part, which doesn´t appear before updating...
This is the ultimate cause in your call stack:
Caused by: org.neo4j.kernel.api.exceptions.ProcedureException: Unable to register procedure, because the name `apoc.algo.betweenness` is already in use.
This type of exception, where an APOC procedure name is already in use, can be seen when you install a new APOC plugin .jar without removing an existing APOC .jar.
If this applies to you, delete the old APOC .jar and try starting neo4j again.
I have been using Neo4j for more than 3 months on this server. Not sure what changed, but today morning I am unable to start Neo4j server.
Till today everything was fine and there were not changes that I know of were made to Neo4j or anything else.
I am currently using neo4j 3.1.0.
The following is the error log.
xxx#dataserver:~$ sudo neo4j console
Starting Neo4j.
WARNING: Max 1024 open files allowed, minimum of 40000 recommended. See the Neo4j manual.
2017-05-01 03:09:17.948+0000 INFO Starting...
2017-05-01 03:09:18.616+0000 INFO Bolt enabled on 0.0.0.0:7687.
2017-05-01 03:09:20.766+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2241b683' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2241b683' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2241b683' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:227)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:91)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:68)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#2241b683' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:443)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:199)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, /var/lib/neo4j/data/databases/default.graphdb
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:193)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:124)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:57)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.recovery.Recovery#4b1ec7fa' failed to initialize. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:415)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:517)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:100)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:189)
... 9 more
Caused by: java.lang.IllegalArgumentException: Unknown entry type -1 for version -1. At position LogPosition{logVersion=94, byteOffset=157773910} and entry version V2_1
at org.neo4j.kernel.impl.transaction.log.entry.LogEntryVersion.entryParser(LogEntryVersion.java:141)
at org.neo4j.kernel.impl.transaction.log.entry.VersionAwareLogEntryReader.readLogEntry(VersionAwareLogEntryReader.java:84)
at org.neo4j.kernel.impl.transaction.log.LogEntryCursor.next(LogEntryCursor.java:54)
at org.neo4j.kernel.recovery.LatestCheckPointFinder.find(LatestCheckPointFinder.java:78)
at org.neo4j.kernel.recovery.PositionToRecoverFrom.apply(PositionToRecoverFrom.java:53)
at org.neo4j.kernel.recovery.DefaultRecoverySPI.getPositionToRecoverFrom(DefaultRecoverySPI.java:80)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:80)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:405)
... 18 more
Stop service
Change dbms.allow_upgrade to true in neo4j config file
Start service again
I had the same problem, and upgrading the db fixed it. I would also suggest changing the password if you are still using default password. Once you start the service it should upgrade the database, once upgraded, you can change the dbms.allow_upgrade to false again if you dont want neo4j to update automatically.
I got Neo4j working on my Ubuntu Server, but after a update of Openssl and a reboot, i only get critical errors at startup.
I removed neo4j and reinstalled it (removed my manual Installation and installed it as a package with apt-get )
Still errors at startup and the Java stacktrace is not helpfull for me.
My Java looks fine and can run all other java Applications, i use:
java -version
java version "1.7.0_65"
OpenJDK Runtime Environment (IcedTea 2.5.2) (7u65-2.5.2-3~14.04)
OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)
Hope someone knows an answer to it.
Here is the ErrorLog:
4-10-20 12:27:28.908+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
2014-10-20 12:29:36.997+0000 ERROR [org.neo4j]: Exception when stopping org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9 java.nio.channels.ClosedByInterruptException
java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:36.999+0000 ERROR [org.neo4j]: Exception when stopping org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80 Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 12 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:37.000+0000 ERROR [org.neo4j]: Lifecycle exception Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80' failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 9 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 12 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:37.002+0000 ERROR [org.neo4j]: Chained lifecycle exception Component 'org.neo4j.kernel.extension.KernelExtensions#7d1fdb25' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#7d1fdb25' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#76717dc9' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:119)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 8 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#52f1a4a9' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:415)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:326)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 11 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.<init>(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:320)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:230)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 16 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.position(StoreFileChannel.java:105)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.position(StoreFileChannel.java:28)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.<init>(IndexProviderStore.java:61)
... 19 more
2014-10-20 12:29:37.006+0000 INFO [API] Successfully shutdown Neo4j Server.
I use neo4j-community-2.0.1-unix.tar.gz:
I delete old data in the database:
t#konrad:~/neo4j$ rm -rf ./data/
I start the application:
t#konrad:~/neo4j$ ./bin/neo4j console
: Max 1024 open files allowed, minimum of 40 000 recommended. See the
Neo4j manual. Starting Neo4j Server console-mode...
/home/triptop/neo4j/data/log was missing, recreating... Using
additional JVM arguments: -server -XX:+DisableExplicitGC
-Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled 2014-04-02 10:10:01.149+0000 INFO [API] Setting startup timeout to: 120000ms
based on -1 2014-04-02 10:12:29.005+0000 ERROR [org.neo4j]: Exception
when stopping
org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8
java.nio.channels.ClosedByInterruptException
java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.037+0000 ERROR [org.neo4j]: Exception when stopping
org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f
Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.057+0000 ERROR [org.neo4j]: Lifecycle exception Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 11 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.080+0000 ERROR [org.neo4j]: Chained lifecycle exception Component
'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception. org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.lucene.LuceneKernelExtension#287c20ab' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:118)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 10 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.impl.lucene.LuceneDataSource#2f4c076f' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:411)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:324)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 13 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:302)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:225)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 18 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 21 more 2014-04-02 10:12:29.141+0000 DEBUG [API] Failed to start database. 2014-04-02 10:12:29.144+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than
120000ms, and was stopped. You can disable this behavior by setting
'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:211)
~[neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-2.0.1.jar:2.0.1] 2014-04-02 10:12:29.180+0000 DEBUG
[API] Failed to start Neo Server on port [7478]
Any ideas why this may happen?
My java is:
$ java -version
java version "1.7.0_51"
Java(TM) SE Runtime Environment (build 1.7.0_51-b13)
Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode)
Your system only allow 1024 open files. Read the first line of your startup message:
Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual
see http://docs.neo4j.org/chunked/stable/linux-performance-guide.html#_setting_the_number_of_open_files for details.
i'm having a real issue trying start neo4j at the moment. My setup consists in 2 servers which are in HA mode. Last night, server 1 logged the fact that there was a timeout trying to elect the master, and it was not available anymore. Server 2 seemed to work fine.
So i tried to restart server 1, and here's the log message i have :
Starting Neo4j Server console-mode...
Detected incorrectly shut down database, performing recovery..
05/07/13 09:52:57 org.neo4j.server.CommunityBootstrapper SEVERE:
java.lang.RuntimeException: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#17f0d3b8' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:319)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:100)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:197)
at org.neo4j.kernel.impl.recovery.StoreRecoverer.recover(StoreRecoverer.java:115)
at org.neo4j.server.preflight.PerformRecoveryIfNecessary.run(PerformRecoveryIfNecessary.java:59)
at org.neo4j.server.preflight.PreFlightTasks.run(PreFlightTasks.java:70)
at org.neo4j.server.AbstractNeoServer.runPreflightTasks(AbstractNeoServer.java:299)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:132)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:86)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:49)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#17f0d3b8' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:504)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:296)
... 10 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#3cbcef07' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:504)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:126)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:498)
... 12 more
Caused by: java.lang.IllegalStateException: No such store[/home/neo-data/graph.db/neostore.relationshiptypestore.db.names] for org.neo4j.kernel.DefaultFileSystemAbstraction#7d6bab68
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore.checkStorage(CommonAbstractStore.java:149)
at org.neo4j.kernel.impl.nioneo.store.CommonAbstractStore.<init>(CommonAbstractStore.java:110)
at org.neo4j.kernel.impl.nioneo.store.AbstractDynamicStore.<init>(AbstractDynamicStore.java:75)
at org.neo4j.kernel.impl.nioneo.store.DynamicStringStore.<init>(DynamicStringStore.java:43)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.newDynamicStringStore(StoreFactory.java:153)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.newRelationshipTypeTokenStore(StoreFactory.java:159)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.attemptNewNeoStore(StoreFactory.java:125)
at org.neo4j.kernel.impl.nioneo.store.StoreFactory.newNeoStore(StoreFactory.java:114)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:277)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:498)
... 15 more
05/07/13 09:52:57 org.neo4j.server.CommunityBootstrapper SEVERE: Failed to start Neo Server on port [7474]
I understand that there may be troubles with the data, but i can't find how to fix that.
I'm running neo4j 2.0M03 on ubuntu server appliances.
Thanks in advance for any help !
Gouffe