2.1.5 Critical Error on startup - neo4j

I got Neo4j working on my Ubuntu Server, but after a update of Openssl and a reboot, i only get critical errors at startup.
I removed neo4j and reinstalled it (removed my manual Installation and installed it as a package with apt-get )
Still errors at startup and the Java stacktrace is not helpfull for me.
My Java looks fine and can run all other java Applications, i use:
java -version
java version "1.7.0_65"
OpenJDK Runtime Environment (IcedTea 2.5.2) (7u65-2.5.2-3~14.04)
OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)
Hope someone knows an answer to it.
Here is the ErrorLog:
4-10-20 12:27:28.908+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
2014-10-20 12:29:36.997+0000 ERROR [org.neo4j]: Exception when stopping org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9 java.nio.channels.ClosedByInterruptException
java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:36.999+0000 ERROR [org.neo4j]: Exception when stopping org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80 Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 12 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:37.000+0000 ERROR [org.neo4j]: Lifecycle exception Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80' failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4f325e80' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#a0e0ab9' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:532)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 9 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:499)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:527)
... 12 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:744)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:724)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.write(StoreFileChannel.java:51)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.writeAll(StoreFileChannel.java:72)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:162)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:171)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:614)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:639)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 14 more
2014-10-20 12:29:37.002+0000 ERROR [org.neo4j]: Chained lifecycle exception Component 'org.neo4j.kernel.extension.KernelExtensions#7d1fdb25' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#7d1fdb25' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)
at org.neo4j.server.database.LifecycleManagingDatabase$1.newGraphDatabase(LifecycleManagingDatabase.java:45)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:119)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:167)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:108)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:62)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#76717dc9' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:119)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 8 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#52f1a4a9' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:415)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:326)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 11 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.<init>(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:320)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:230)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)
... 16 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.position(StoreFileChannel.java:105)
at org.neo4j.kernel.impl.nioneo.store.StoreFileChannel.position(StoreFileChannel.java:28)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.<init>(IndexProviderStore.java:61)
... 19 more
2014-10-20 12:29:37.006+0000 INFO [API] Successfully shutdown Neo4j Server.

Related

Neo4j 3.4 upgrade--DB not starting

After attempting to update to Neo4j 3.4 the DB fails to start. Here is the log:
WARNING: This command does not appear to be running with administrative rights. Some commands may fail e.g. Start/Stop
2018-05-23 16:17:25.306+0000 INFO ======== Neo4j 3.4.0 ========
2018-05-23 16:17:25.365+0000 INFO Starting... 2018-05-23
16:17:27.607+0000 INFO Initiating metrics... 2018-05-23
16:17:33.331+0000 INFO Sending metrics to CSV file at
C:\Users\miz9013\AppData\Roaming\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\metrics
2018-05-23 16:17:34.349+0000 INFO Bolt enabled on 127.0.0.1:11002.
2018-05-23 16:17:35.937+0000 ERROR Failed to start Neo4j: Starting
Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
Starting Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
org.neo4j.server.ServerStartupException: Starting Neo4j failed:
Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:220)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at
com.neo4j.server.enterprise.CommercialEntryPoint.main(CommercialEntryPoint.java:22)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:212)
... 3 more Caused by: java.lang.RuntimeException: Error starting
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory,
C:\Users\miz9013\AppData\Roaming\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\data\databases\graph.db
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:212)
at
org.neo4j.kernel.enterprise.EnterpriseGraphDatabase.(EnterpriseGraphDatabase.java:39)
at
org.neo4j.server.enterprise.OpenEnterpriseNeoServer.lambda$static$1(OpenEnterpriseNeoServer.java:78)
at
org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 5 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.impl.proc.Procedures#787178b1' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:208)
... 9 more Caused by: java.lang.NoClassDefFoundError:
Lorg/neo4j/kernel/api/security/SecurityContext; at
java.lang.Class.getDeclaredFields0(Native Method) at
java.lang.Class.privateGetDeclaredFields(Class.java:2583) at
java.lang.Class.getDeclaredFields(Class.java:1916) at
org.neo4j.kernel.impl.proc.FieldInjections.setters(FieldInjections.java:90)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:290)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:242)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProcedures(ProcedureJarLoader.java:90)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProceduresFromDir(ProcedureJarLoader.java:78)
at org.neo4j.kernel.impl.proc.Procedures.start(Procedures.java:323)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 11 more Caused by: java.lang.ClassNotFoundException:
org.neo4j.kernel.api.security.SecurityContext at
java.net.URLClassLoader.findClass(URLClassLoader.java:381) at
java.lang.ClassLoader.loadClass(ClassLoader.java:424) at
sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335) at
java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 21 more
2018-05-23 16:17:35.951+0000 INFO Neo4j Server shutdown initiated by
request WARNING: This command does not appear to be running with
administrative rights. Some commands may fail e.g. Start/Stop
2018-05-23 19:10:38.733+0000 INFO ======== Neo4j 3.4.0 ========
2018-05-23 19:10:38.799+0000 INFO Starting... 2018-05-23
19:10:42.536+0000 INFO Initiating metrics... 2018-05-23
19:10:48.101+0000 INFO Sending metrics to CSV file at
C:\Users\miz9013\AppData\Roaming\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\metrics
2018-05-23 19:10:48.848+0000 INFO Bolt enabled on 127.0.0.1:11002.
2018-05-23 19:10:50.174+0000 ERROR Failed to start Neo4j: Starting
Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
Starting Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
org.neo4j.server.ServerStartupException: Starting Neo4j failed:
Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:220)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at
com.neo4j.server.enterprise.CommercialEntryPoint.main(CommercialEntryPoint.java:22)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:212)
... 3 more Caused by: java.lang.RuntimeException: Error starting
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory,
C:\Users\miz9013\AppData\Roaming\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\data\databases\graph.db
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:212)
at
org.neo4j.kernel.enterprise.EnterpriseGraphDatabase.(EnterpriseGraphDatabase.java:39)
at
org.neo4j.server.enterprise.OpenEnterpriseNeoServer.lambda$static$1(OpenEnterpriseNeoServer.java:78)
at
org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 5 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.impl.proc.Procedures#787178b1' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:208)
... 9 more Caused by: java.lang.NoClassDefFoundError:
Lorg/neo4j/kernel/api/security/SecurityContext; at
java.lang.Class.getDeclaredFields0(Native Method) at
java.lang.Class.privateGetDeclaredFields(Class.java:2583) at
java.lang.Class.getDeclaredFields(Class.java:1916) at
org.neo4j.kernel.impl.proc.FieldInjections.setters(FieldInjections.java:90)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:290)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:242)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProcedures(ProcedureJarLoader.java:90)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProceduresFromDir(ProcedureJarLoader.java:78)
at org.neo4j.kernel.impl.proc.Procedures.start(Procedures.java:323)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 11 more Caused by: java.lang.ClassNotFoundException:
org.neo4j.kernel.api.security.SecurityContext at
java.net.URLClassLoader.findClass(URLClassLoader.java:381) at
java.lang.ClassLoader.loadClass(ClassLoader.java:424) at
sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335) at
java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 21 more
2018-05-23 19:10:50.176+0000 INFO Neo4j Server shutdown initiated by
request WARNING: This command does not appear to be running with
administrative rights. Some commands may fail e.g. Start/Stop
2018-05-23 19:11:19.679+0000 INFO ======== Neo4j 3.4.0 ========
2018-05-23 19:11:19.726+0000 INFO Starting... 2018-05-23
19:11:22.465+0000 INFO Initiating metrics... 2018-05-23
19:11:28.419+0000 INFO Sending metrics to CSV file at C:\\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\metrics
2018-05-23 19:11:29.145+0000 INFO Bolt enabled on 127.0.0.1:11002.
2018-05-23 19:11:31.478+0000 ERROR Failed to start Neo4j: Starting
Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
Starting Neo4j failed: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext".
org.neo4j.server.ServerStartupException: Starting Neo4j failed:
Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:220)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:111)
at
org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:79)
at
com.neo4j.server.enterprise.CommercialEntryPoint.main(CommercialEntryPoint.java:22)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.server.database.LifecycleManagingDatabase#3af236d0' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:212)
... 3 more Caused by: java.lang.RuntimeException: Error starting
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory,
C:\Roaming\Neo4j
Desktop\Application\neo4jDatabases\database-5aba9bf6-8425-4e66-a065-6a5987cff891\current\data\databases\graph.db
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:212)
at
org.neo4j.kernel.enterprise.EnterpriseGraphDatabase.(EnterpriseGraphDatabase.java:39)
at
org.neo4j.server.enterprise.OpenEnterpriseNeoServer.lambda$static$1(OpenEnterpriseNeoServer.java:78)
at
org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:88)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 5 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.impl.proc.Procedures#787178b1' was
successfully initialized, but failed to start. Please see the attached
cause exception "org.neo4j.kernel.api.security.SecurityContext". at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:466)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at
org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:208)
... 9 more Caused by: java.lang.NoClassDefFoundError:
Lorg/neo4j/kernel/api/security/SecurityContext; at
java.lang.Class.getDeclaredFields0(Native Method) at
java.lang.Class.privateGetDeclaredFields(Class.java:2583) at
java.lang.Class.getDeclaredFields(Class.java:1916) at
org.neo4j.kernel.impl.proc.FieldInjections.setters(FieldInjections.java:90)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:290)
at
org.neo4j.kernel.impl.proc.ReflectiveProcedureCompiler.compileProcedure(ReflectiveProcedureCompiler.java:242)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProcedures(ProcedureJarLoader.java:90)
at
org.neo4j.kernel.impl.proc.ProcedureJarLoader.loadProceduresFromDir(ProcedureJarLoader.java:78)
at org.neo4j.kernel.impl.proc.Procedures.start(Procedures.java:323)
at
org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:445)
... 11 more Caused by: java.lang.ClassNotFoundException:
org.neo4j.kernel.api.security.SecurityContext at
java.net.URLClassLoader.findClass(URLClassLoader.java:381) at
java.lang.ClassLoader.loadClass(ClassLoader.java:424) at
sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335) at
java.lang.ClassLoader.loadClass(ClassLoader.java:357) ... 21 more
2018-05-23 19:11:31.482+0000 INFO Neo4j Server shutdown initiated by
request
One reason can be an incompatible version of a plugin like APOC, see GitHub repository of APOC for more information: https://github.com/neo4j-contrib/neo4j-apoc-procedures/issues/734

NEO4J Server startup issue java.lang.NegativeArraySizeException

The neo4j server is not able to start and i am getting an error java.lang.NegativeArraySizeException
I have added the complete trace below:
2017-04-17 06:31:12.832+0000 ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:227)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:91)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:68)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#40e621fd' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:443)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:199)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory, /var/lib/neo4j/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:193)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:124)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:57)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.recovery.Recovery#26a34b49' failed to initialize. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:415)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:517)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:100)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:433)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.initFacade(GraphDatabaseFacadeFactory.java:189)
... 9 more
Caused by: java.lang.NegativeArraySizeException
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readDynamicRecord(PhysicalLogCommandReaderV3_0_2.java:492)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readDynamicRecords(PhysicalLogCommandReaderV3_0_2.java:506)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.readPropertyRecord(PhysicalLogCommandReaderV3_0_2.java:564)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.visitPropertyCommand(PhysicalLogCommandReaderV3_0_2.java:189)
at org.neo4j.kernel.impl.transaction.command.PhysicalLogCommandReaderV3_0_2.read(PhysicalLogCommandReaderV3_0_2.java:76)
at org.neo4j.kernel.impl.transaction.command.BaseCommandReader.read(BaseCommandReader.java:49)
at org.neo4j.kernel.impl.transaction.command.BaseCommandReader.read(BaseCommandReader.java:34)
at org.neo4j.kernel.impl.transaction.log.entry.LogEntryParsersV2_3$3.parse(LogEntryParsersV2_3.java:94)
at org.neo4j.kernel.impl.transaction.log.entry.VersionAwareLogEntryReader.readLogEntry(VersionAwareLogEntryReader.java:98)
at org.neo4j.kernel.impl.transaction.log.LogEntryCursor.next(LogEntryCursor.java:54)
at org.neo4j.kernel.recovery.LatestCheckPointFinder.find(LatestCheckPointFinder.java:78)
at org.neo4j.kernel.recovery.PositionToRecoverFrom.apply(PositionToRecoverFrom.java:53)
at org.neo4j.kernel.recovery.DefaultRecoverySPI.getPositionToRecoverFrom(DefaultRecoverySPI.java:80)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:80)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:405)

unable to start neo4j after exhausting storage in the machine

I have running the neo4j community version from last 5 months and it was working fine. But today all the storage space on my machine where neo4j is running got exhausted. So I deleted few files not related to neo4j. But still, neo4j was not responding to the queries. So I restarted neo4j. But it does not start anymore. Can anyone point me in the right direction?
Here are the logs
ERROR Failed to start Neo4j: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception. Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
org.neo4j.server.ServerStartupException: Starting Neo4j failed: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:215)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:90)
at org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:67)
at org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.server.database.LifecycleManagingDatabase#652d6ca4' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:444)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:187)
... 3 more
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.impl.factory.CommunityFacadeFactory, /var/lib/neo4j/data/databases/graph.db
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:144)
at org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:40)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108)
at org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:55)
at org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
... 5 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.recovery.Recovery#39ef543' failed to initialize. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:416)
at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
at org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:511)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:99)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
at org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:140)
... 10 more
Caused by: java.lang.IllegalArgumentException: Unknown entry type -1 for version -1. At position LogPosition{logVersion=79, byteOffset=85258244} and entry version V2_1
at org.neo4j.kernel.impl.transaction.log.entry.LogEntryVersion.entryParser(LogEntryVersion.java:141)
at org.neo4j.kernel.impl.transaction.log.entry.VersionAwareLogEntryReader.readLogEntry(VersionAwareLogEntryReader.java:84)
at org.neo4j.kernel.impl.transaction.log.LogEntryCursor.next(LogEntryCursor.java:54)
at org.neo4j.kernel.recovery.LatestCheckPointFinder.find(LatestCheckPointFinder.java:78)
at org.neo4j.kernel.recovery.PositionToRecoverFrom.apply(PositionToRecoverFrom.java:53)
at org.neo4j.kernel.recovery.DefaultRecoverySPI.getPositionToRecoverFrom(DefaultRecoverySPI.java:80)
at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:80)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406)
... 19 more

Neo4j doesn't start on debian

I use neo4j-community-2.0.1-unix.tar.gz:
I delete old data in the database:
t#konrad:~/neo4j$ rm -rf ./data/
I start the application:
t#konrad:~/neo4j$ ./bin/neo4j console
: Max 1024 open files allowed, minimum of 40 000 recommended. See the
Neo4j manual. Starting Neo4j Server console-mode...
/home/triptop/neo4j/data/log was missing, recreating... Using
additional JVM arguments: -server -XX:+DisableExplicitGC
-Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled 2014-04-02 10:10:01.149+0000 INFO [API] Setting startup timeout to: 120000ms
based on -1 2014-04-02 10:12:29.005+0000 ERROR [org.neo4j]: Exception
when stopping
org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8
java.nio.channels.ClosedByInterruptException
java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.037+0000 ERROR [org.neo4j]: Exception when stopping
org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f
Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: java.lang.RuntimeException:
java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.057+0000 ERROR [org.neo4j]: Lifecycle exception Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.transaction.XaDataSourceManager#2bf11e9f'
failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:123)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#4ec143d8' failed
to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:528)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:155)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:185)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 11 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:73)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:448)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:523)
... 14 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:164)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:178)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:700)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:725)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:69)
... 16 more 2014-04-02 10:12:29.080+0000 ERROR [org.neo4j]: Chained lifecycle exception Component
'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception. org.neo4j.kernel.lifecycle.LifecycleException:
Component 'org.neo4j.kernel.extension.KernelExtensions#55aa75c1' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:307)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.server.database.CommunityDatabase.createDb(CommunityDatabase.java:62)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:120)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:158)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.lucene.LuceneKernelExtension#287c20ab' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:118)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 10 more Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
'org.neo4j.index.impl.lucene.LuceneDataSource#2f4c076f' was
successfully initialized, but failed to start. Please see attached
cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:509)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:411)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:324)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 13 more Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:302)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:225)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:503)
... 18 more Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 21 more 2014-04-02 10:12:29.141+0000 DEBUG [API] Failed to start database. 2014-04-02 10:12:29.144+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than
120000ms, and was stopped. You can disable this behavior by setting
'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:211)
~[neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-2.0.1.jar:2.0.1]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-2.0.1.jar:2.0.1] 2014-04-02 10:12:29.180+0000 DEBUG
[API] Failed to start Neo Server on port [7478]
Any ideas why this may happen?
My java is:
$ java -version
java version "1.7.0_51"
Java(TM) SE Runtime Environment (build 1.7.0_51-b13)
Java HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode)
Your system only allow 1024 open files. Read the first line of your startup message:
Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual
see http://docs.neo4j.org/chunked/stable/linux-performance-guide.html#_setting_the_number_of_open_files for details.

Neo4j startup timeout on Arch Linux

[This doesn't really feel like a StackOverflow question to me, but the Google Group explicitly redirected me here.]
I am attempting to run Neo4j on Arch Linux, with a spectacular lack of success. Running bin/neo4j console times out. I am using neo4j-community-1.9.5. All of this information is from running it for the first time immediately after untarring.
Output to the console:
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled
2013-12-07 00:00:02.698+0000 DEBUG [API] You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
2013-12-07 00:00:03.225+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
16:00:03.687 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4d9ecb' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:112)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#1394a8d' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:149)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 10 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:72)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:301)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 13 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:159)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:172)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:678)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:703)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:68)
... 15 more
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#6d3bea' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#183608e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:113)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 9 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#12d3734' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:404)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:318)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:196)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:86)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:299)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:223)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 17 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 20 more
2013-12-07 00:02:15.217+0000 DEBUG [API] Failed to start database.
2013-12-07 00:02:15.221+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204) ~[neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-1.9.5.jar:1.9.5]
2013-12-07 00:02:15.225+0000 DEBUG [API] Failed to start Neo Server on port [7474]
Starting Neo4j Server console-mode...
Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled
2013-12-07 00:00:02.698+0000 DEBUG [API] You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
2013-12-07 00:00:03.225+0000 INFO [API] Setting startup timeout to: 120000ms based on -1
16:00:03.687 [main] WARN o.neo4j.kernel.EmbeddedGraphDatabase - You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager#4d9ecb' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:112)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource#1394a8d' failed to stop. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:515)
at org.neo4j.kernel.lifecycle.LifeSupport.stop(LifeSupport.java:146)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.stop(XaDataSourceManager.java:149)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 10 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:72)
at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.stop(NeoStoreXaDataSource.java:301)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.stop(LifeSupport.java:511)
... 13 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.writeInternal(FileChannelImpl.java:743)
at sun.nio.ch.FileChannelImpl.write(FileChannelImpl.java:723)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.writeOut(DirectMappedLogBuffer.java:159)
at org.neo4j.kernel.impl.transaction.xaframework.DirectMappedLogBuffer.force(DirectMappedLogBuffer.java:172)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.releaseCurrentLogFile(XaLogicalLog.java:678)
at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.close(XaLogicalLog.java:703)
at org.neo4j.kernel.impl.transaction.xaframework.LogBackedXaDataSource.stop(LogBackedXaDataSource.java:68)
... 15 more
org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions#6d3bea' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:262)
at org.neo4j.kernel.EmbeddedGraphDatabase.(EmbeddedGraphDatabase.java:106)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:88)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:207)
at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:54)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:168)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension#183608e' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:104)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:113)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 9 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource#12d3734' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:497)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:404)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:318)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:196)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:86)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 12 more
Caused by: java.lang.RuntimeException: java.nio.channels.ClosedByInterruptException
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:85)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:299)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:223)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:491)
... 17 more
Caused by: java.nio.channels.ClosedByInterruptException
at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:202)
at sun.nio.ch.FileChannelImpl.position(FileChannelImpl.java:290)
at org.neo4j.kernel.impl.index.IndexProviderStore.write(IndexProviderStore.java:169)
at org.neo4j.kernel.impl.index.IndexProviderStore.create(IndexProviderStore.java:153)
at org.neo4j.kernel.impl.index.IndexProviderStore.(IndexProviderStore.java:61)
... 20 more
2013-12-07 00:02:15.217+0000 DEBUG [API] Failed to start database.
2013-12-07 00:02:15.221+0000 DEBUG [API]
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204) ~[neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87) [neo4j-server-1.9.5.jar:1.9.5]
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50) [neo4j-server-1.9.5.jar:1.9.5]
2013-12-07 00:02:15.225+0000 DEBUG [API] Failed to start Neo Server on port [7474]
Contents of the log file:
Dec 06, 2013 4:00:01 PM org.neo4j.server.logging.Logger log
WARNING: You are using an unsupported Java runtime. Please use Oracle(R) Java(TM) Runtime Environment 7.
Dec 06, 2013 4:00:03 PM org.neo4j.server.logging.Logger log
INFO: Setting startup timeout to: 120000ms based on -1
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE: Failed to start database.
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE:
org.neo4j.server.ServerStartupException: Startup took longer than 120000ms, and was stopped. You can disable this behavior by setting 'org.neo4j.server.startup_timeout' to 0. Error code: 1
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:204)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Dec 06, 2013 4:02:15 PM org.neo4j.server.logging.Logger log
SEVERE: Failed to start Neo Server on port [7474]
Java version information:
java version "1.7.0_45"
OpenJDK Runtime Environment (IcedTea 2.4.3) (ArchLinux build 7.u45_2.4.3-1-i686)
OpenJDK Server VM (build 24.45-b08, mixed mode)
Does anyone have any idea what's going on here? Or where I could dig for more information? Or what I could do instead that might work?
Neo4j is currently only supported on Oracle JDK, you're running on OpenJDK.
Also make sure your settings for number of files is correct, see http://docs.neo4j.org/chunked/stable/configuration-linux-notes.html#_setting_the_number_of_open_files.
Check as well if you got enough permissions for Neo4j to write to the data/graph.db folder.
I reverted to version 1.8.3, the second to latest stable. That version works fine and is sufficient to my purpose. Problem undiagnosed, but resolved enough.

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